Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0001030 | OGI:10006110 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:1828906-1835152 | ||||||||
| Gene Symbol | LRR-RLK2, OsLRR-RLK2, - | ||||||||||
| DNA seq | atgagcaccaacacgttaggcggcaacatgcaggagattcttggcaagttcgtggcgttgaaatacctcgtgttgcatcacaacgactacaccggcagcatcgtctcctccaacgtgctccggctgccgctgctcgcaaggctcgacctcagcttcaaccagttctccggcgagctccctctcgaggtggtcaacatgaagagcctcaagtatgtgatgctcctggcgaataacttctccggtgggattccggcgacctacccgccgttcaactttgtgtacacggtgatgatgcgggagaattgccgcagcatatgggttcgccttctcaagggctacggaatcatcccgatttgcaccaactcctcgtcgccggtgaggtccaacacgatctccggctacgtgcagctctccggcaacaagctttccggtgagataccttctcagatcggcgcaatgcggaacctcagcttgctccacctcgacaacaaccagctcacgggtcacttgccgccggagatcagccagttgccgctcgtcgtgctaaacgtctcgagcaacatcatctccggcaggatcatcacgggcatggtcatgttcatcatggccaacctgcgggtgaggtttccggtggaccaggacccgaaccccgagtcgctctcctgcgagaaccccaagtgcggcggcggcggcggcaagtgcggcgcgttccatatgtcggctacgtcgtcaccgccgtccggatgctcgtcatcgtgcgtgaccgggtgctcgcgcctcctcccgcctcggacacgctactccgccgccgcaggggcagcatccacgccggccgcacactccagcgcctgcacgccagccctcccgccccgccgcggccgctgctccggctctcgtcgctgcccctgcccgttgattgctccacgagagagaaggtgaagagaagagggggagagaaagagaggtaagggagagagagggaggaggaagaggaagatagagaggatgacatgtgggccccatatattagtggggccacaatttttttttaatcatatatgggtcctacatatatttttttaattctaatgccacgtaagcgctacgtgggatgaaaactaggtcaacattgccacgtcagcgccacatcagcaaaaccgccatccaaaaccgccgagggagtcaaattgcactggtttcaatagttcggggagtcgtcctatccggttttacggttgagggttatggattagattcgagtcacttttaagggagttaaagtggacttattcctatgttaattattgtcgaaatgatgaatgttgaaatgttgagaaaataatgtaaggaagatgattcgacatatagttgtcaatctctataatataatattatagatgatgtgttatgattgtatgggatttaaaataggctagaatagtaattgctagtgagtgaagatgtggcatgtttgcatgggtttttaaatgggctagaatagtaattgctagtgggtgatgacatggtatgcttgcatgttgagctttagcttctaataattattagtgggtaccaactatatagaaagtatagattcgtaaaaatatggtttgcggtgtacatttatagggtgtatatatgcgcatgtttgagcgcctacatcctatatacctatacaaatcattctcactactagaattctctgcttcttggtgcttccacgtcacccctttttgtttccaccgttggatccgcatcgagcgcttcctcccgcatcgctcctctcctctaccgcatctcgctgcttcgccggccccacgctcccctcccctcctctcctctgcctctcccgcatcgcgctgcttcgcgggccccatgcgcatggactcccctctcccgcatctcgtgccgccccccccccccaccgcatccacaccgttccccatccctcgtgcactctgccaccagccaccgcttctccaggtgggtccttctggcctgttcgcatcctcggtgtggaaaccgtcatcttttgtaaccggcgattagcatcattagggcctccttccaatcttctttgtgtatggcgatacgcatgacagggtttggtactaatcctgtactacgatgtgtgaaaacaagtgatcttcagcttctcctccagatcctgacaagaacatccgtggatcgatctgctcggccaacaagcagcttctcctcccctccatagaagcatgtctctggactgatcctccatacaagcacacccctagattgatctgtcgggccaacaaagaggttgttccgctgcttgccgatctcagttgttaagtgcaggctatttccctcatccagcagtaggcattccaatttcttcactattcaattatcaatttccaaccaatttcagtatcctagatctgtctgctccttttcccctttacgtcagtttgaattagcatactataatcactcccttcaatatcttcacagattaattaattactttgattttgccatgggtttaattgttattggattgtactactattgggggaaatttctttgatggtaatacataacactagaatccttttttattgctaattatacaatttctatattacgctcctttgtttttcccctttttaattcattttgtaatcattcaggtcacctttgcatctgtcaaacaactttatatttttatgttagtttttgtattcgataatgtagcgctggaaactctttttatccgcagctcatttgtaaacatgcatgatctatctcgatgacatgaaaatgactgcagattattcccaatttatcaaatggttggtgatcctttagtcagctgtgtgattcagtgaagtaatgattgggatgaatttttttttatcatatgcaacacggtgttctcatatagatgttactttatgatccttcagactttgctaattctttatataacgatcaataatggaaagttacagttttttaggtcactgtctcctttgattttcattaccaatattatctgacctgggttcacaatttcagtaataatagtatgatctcaaaattcttgaattaattactgtttatttacctttagtttatatatattgattcatctattatgtttattgaccaatattcctgtttgtttttttagaaatgatggtgttcttgagacttccatctgtgatacacatatataatagggaagtatcgagtattttcaacattgttcttcttgcccaatagatttggaacctaaactttgatcaataataatatgtgttctgtctgggaatagttaatcctacaacagtccagaaaatcataatatatatactatacaaccattcaattgttgcctctgcgaggagtaacaagcttgctctataccattaaccttatcctattagtcaagcatgcttaattgtgcttctgtttctgtcatgcacttcaatcatgcttaattgtgcttctattttctgtcaggcactgtcgtggttgttttacatgaggaagtctcaatgcactcagaagtgcaacactgccataagtttatttccttgcaaaagttactaaaatatccagaatttcagaatgtagtctgtattgccttggtttcccttctcttagttcttttgtttatctcaaagtgaacatggatctttcaaattctatttcaacacaaatattccgcagcaacgcgcggggtatcatctagtttctactatgtttcaaaaaatatatatatttcattgacaacgaaattacttttgaaaaggccactgcacatttgtacctggttggcaaataaaaaaattttatgagttttccttttttttagaaaagagattttaagtttctcaagataaaattaatttcggtaaatggaatcctcaagaattcagataaccccagctatcgataaaattaggggcaattgtaaatttaccactattttgaatcgttattgcaagactgccactagaaaattacaaaaataccactagaactatcattcgagtgagatccttacaatattgaaaaaacagtggtaatttgcaaatgcccctaaaattaacaacatctcactatctgtgtttcctttattaatgtcatgcaagcatgtcataaacattcgtagattaaatgatcaatatatatataatatattgggtttgttttctttgatggtaccaccgaagagtaacatacaaatataaaacggcaaagcataaaaaggggatcagttctacagttgaccttagcttgagtacgtgcaacaaattaatagtgtatacatctggatattcaccaaattataaaatgttgacagccttccactatctgttagcaatgaacatgctggccttatttcccaaatatatatcatgccgtatctccttttctgttggatttggtcttcttttgcacaaatatatagattggagaagattttattcccataatgtttgacaacctttttcatgtttactgtgggagtgtttgcttgccataatctcgttccaatgcatggtgcatctctttttttaagacaaaaaaaatgaagggtgcattataaagcaggggacagaagaacagtgattccttccaaagcaattgtactcgactactcgtgtacgtgcaatccacttcaataagaaaaatgaaatcaaaagaaaaggacgaaacaggtaactttgttgcatccagttacttcacaatttgcaaacggagaaggaaaacaattaacaaaacaactcagtacagcctaaacaaccatcttcccaaagaatgatagaaagcacattcttggattcggacataagagcactttaatttgtgtctctttgattcagactcaaccattacatacaccacacttaacatttttctgctaagtgcgcacacgtagaagctaggttcaaaccttaaaacataattttaaaaaaaagatatttctttacaaagaaattaaatggaattttcttatctagaaagagtccaatattctaaacctataaataccagacatttgatagccctaaattaactttttggttttacgaattataaaaagggtaaaagtctgaaggtatgttctaaaaacatattgcaataccacgttactattcagtcatgtgttctcttcatcctttttcattattttgttgaaaggaacaaaaactagggaaaatacactccatgttggtgcagcaacacaagtggaaggagatagtgttgctttggacaaggaggagcctgaagaatacatgcacctagcttcattcagcttttgacggtaacacatgcagttaaatagctatggaaatgtataaaaaactaccaatgattattcttttactttgcatgtgctgataaaagatgatcttttagccaacgatgcattttagtaatgaagtcatgttctggagaataacccgagtttggatgcaattatgtgatagtacaagtatgatggagctgggggcaaaaaaaatcaggagaacttttgtgtctatggttaattttgttttggctagatcctggtgaaagcactcctgttttggggcaatcctgtcaaagtcttactcttaaattggcagcactcaatgatgtatatgtctagctttcttttgctatgttgaaagcaaaacttgggggacaaaatatattcaggctttagatgtccaatgcagcaacaaggatcacattttaatgttgagtgttcactgtccaagcctgtcaactttctgccattgcaatctgaaactcttaatcttattttgtcttaaaatgactcaattaacttgttcacgttctcaaatgctcatagaaatcagagtatcaaattttggcagtatttttatcacattcagtattgaatcagagtcccagttcacatcaattttcggtctcatttcatatctgtacaattccaatcccaatttctcaaacaggtgttgtcgccctcattcagaaagctatgattgtggtggtggtcgcctccctcccttggcagcaacagtcgcgcctttctcccatgctagtgcggcttcttattggcattccttcgacgtgggtggtggtaccgccgccgtggaagccgttgttgttgaggacgccaccgccgtggaagctctcgcgcgggggagagggatggagaggagggcggcatcagaggagtcttcgactcctcggtggtctgctcctcccacgcccacgctag
More
|
||||||||||
| CDS seq | atgagcaccaacacgttaggcggcaacatgcaggagattcttggcaagttcgtggcgttgaaatacctcgtgttgcatcacaacgactacaccggcagcatcgtctcctccaacgtgctccggctgccgctgctcgcaaggctcgacctcagcttcaaccagttctccggcgagctccctctcgaggtggtcaacatgaagagcctcaagtatgtgatgctcctggcgaataacttctccggtgggattccggcgacctacccgccgttcaactttgtgtacacggtgatgatgcgggagaattgccgcagcatatgggttcgccttctcaagggctacggaatcatcccgatttgcaccaactcctcgtcgccggtgaggtccaacacgatctccggctacgtgcagctctccggcaacaagctttccggtgagataccttctcagatcggcgcaatgcggaacctcagcttgctccacctcgacaacaaccagctcacgggtcacttgccgccggagatcagccagttgccgctcgtcgtgctaaacgtctcgagcaacatcatctccggcaggatcatcacgggcatggcactgtcgtggttgttttacatgaggaagtctcaatgcactcagaagtgcaacactgccataagtgttgtcgccctcattcagaaagctatgattgtggtggtggtcgcctccctcccttggcagcaacagtcgcgcctttctcccatgctagtgcggcttcttattggcattccttcgacgtgggtggtggtaccgccgccgtggaagccgttgttgttgaggacgccaccgccgtggaagctctcgcgcgggggagagggatggagaggagggcggcatcagaggagtcttcgactcctcggtggtctgctcctcccacgcccacgctag
More
|
||||||||||
| Protein seq | MSTNTLGGNMQEILGKFVALKYLVLHHNDYTGSIVSSNVLRLPLLARLDLSFNQFSGELPLEVVNMKSLKYVMLLANNFSGGIPATYPPFNFVYTVMMRENCRSIWVRLLKGYGIIPICTNSSSPVRSNTISGYVQLSGNKLSGEIPSQIGAMRNLSLLHLDNNQLTGHLPPEISQLPLVVLNVSSNIISGRIITGMALSWLFYMRKSQCTQKCNTAISVVALIQKAMIVVVVASLPWQQQSRLSPMLVRLLIGIPSTWVVVPPPWKPLLLRTPPPWKLSRGGEGWRGGRHQRSLRLLGGLLLPRPR |
||||||||||
| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g74360 [UniProtKB/Swiss-Prot:C0LGJ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0001030 | OsLima_10g0001030.01 | Chr10 | 1828906 | 1835152 | + | NAM | ||
| CDS seq | atgagcaccaacacgttaggcggcaacatgcaggagattcttggcaagttcgtggcgttgaaatacctcgtgttgcatcacaacgactacaccggcagcatcgtctcctccaacgtgctccggctgccgctgctcgcaaggctcgacctcagcttcaaccagttctccggcgagctccctctcgaggtggtcaacatgaagagcctcaagtatgtgatgctcctggcgaataacttctccggtgggattccggcgacctacccgccgttcaactttgtgtacacggtgatgatgcgggagaattgccgcagcatatgggttcgccttctcaagggctacggaatcatcccgatttgcaccaactcctcgtcgccggtgaggtccaacacgatctccggctacgtgcagctctccggcaacaagctttccggtgagataccttctcagatcggcgcaatgcggaacctcagcttgctccacctcgacaacaaccagctcacgggtcacttgccgccggagatcagccagttgccgctcgtcgtgctaaacgtctcgagcaacatcatctccggcaggatcatcacgggcatggcactgtcgtggttgttttacatgaggaagtctcaatgcactcagaagtgcaacactgccataagtgttgtcgccctcattcagaaagctatgattgtggtggtggtcgcctccctcccttggcagcaacagtcgcgcctttctcccatgctagtgcggcttcttattggcattccttcgacgtgggtggtggtaccgccgccgtggaagccgttgttgttgaggacgccaccgccgtggaagctctcgcgcgggggagagggatggagaggagggcggcatcagaggagtcttcgactcctcggtggtctgctcctcccacgcccacgctag
More
|
|||||||
| Protein seq | MSTNTLGGNMQEILGKFVALKYLVLHHNDYTGSIVSSNVLRLPLLARLDLSFNQFSGELPLEVVNMKSLKYVMLLANNFSGGIPATYPPFNFVYTVMMRENCRSIWVRLLKGYGIIPICTNSSSPVRSNTISGYVQLSGNKLSGEIPSQIGAMRNLSLLHLDNNQLTGHLPPEISQLPLVVLNVSSNIISGRIITGMALSWLFYMRKSQCTQKCNTAISVVALIQKAMIVVVVASLPWQQQSRLSPMLVRLLIGIPSTWVVVPPPWKPLLLRTPPPWKLSRGGEGWRGGRHQRSLRLLGGLLLPRPR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0120300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g03420 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0120300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003660 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003550 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014060 | SBH | 0.000000 | 0.089605 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001040 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0028300 | RBH | 0.0446355 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001060 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0029600 | RBH | 0.0017885 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000950 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001100 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001030 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001020 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001060 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000950 | RBH | 0.0 | 0.0 | 0.0 |
