Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0000430 | OGI:10003010 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:721955-723747 | ||||||||
| Gene Symbol | POXA, poxA, prx126, OsPrx126, prxRPA, RPA | ||||||||||
| DNA seq | agttgcaatcttcagatcatcctgcagcatgatatgatatacagtatatgacccacccaatttaaggcacatacattcagttcttttttttccaatggatcacatctttgttgacgatcagttcacaaactagtcacaatcacatcgttattacttctgcttcttcaagcattcatgtaacatcaaaacattacacacatcgtctcaatcgccttgtgaaaagtacaagaaatttactatcttttcaacacactgaagctcagttaattaacaaccctgcagttcttgcgaatctggccgtcgtcaccggtgagtgggctgatgttgcccatcttcaccatggatctgccaaaatcccagaagaacttgtgggcattggcgctgtaagtctccaccagctccttggtgttggcgatgccgtcgtcgctggagaagagaccctggtcggaggacaggaggcctttctgattgaggaggttctggtagtagcggttgtcgaaaacgtaggcggaggtgatgtccagcacggtggtctcgttgccgtctccaccggcacagaggctctggaggttggcggccatggtggcgtccagcgtcgggtcggctgagcttgaggtggtcgacaaccggttgctgaacagcgtgcaccgggctcgtccgatcgtgtgccctcctattgatgatcaatgagtttcagatttccagatcatttaaaagtttatgaaatcttgaaatgtgcaacagatcattttataattgatcaaatattatctctgacggtttccaagtttttactgtagacagtatgaaaattcggaactgacagagagcatatgttccctgaaacatgggctgccactgtacagtttcaggaagtactacagtgtaggaagaggttatcttagcatataaaccagattctgaaccattcgtgcaccatgagatggattgatcactagtgtgctacctgataggacgacaacatcggttgtgtcgaggccgacatcattgaacttctgtatgatcgatttgatgggttcgaacggtgaagggaggccgttgtcagctcctgattgatttgcgacaagaccatcccttctaccgagaagaacgtcatagtaagggcctccactctgaacaaatgatgaaattttagcatacttgagattttcaaacaaagatgtacagtatcagaaagtgaaacaacaaggacaatgggtagacgtagactgaacatacaaatagtactccatagccagctgcaagggctacaatgtcggcgcaggaaacaacttcagggcagatgttctcgagatcttcctttatcgcgtcaatgacttcgaaccctctgacagagttcttgttgggaagtgcaaatttctcgccgtcgtcaccgtccagaaggatggaaccgtcacacccctgaaatgcacaacaaattttcagtaattgtgacacaactagtcaatttaatatgtatgtagaacattcagataaagttcagagatgtgtgaaaagggtagttaatgtatacattgacaaagcagtcatggaaatggagccttaggagggaggcacccatcctcatctcagtcctcatggcagcataaacatgctgctggacaacggtgtacacatcaggacatatgtagtcgtagaaatcgtcggataactggcatctcgcaccccgagtattaaggcacagtacaagaactgagcatacaagcatgaacctgtagctgtaagagtactccatctctcacagaagttactgccctgctcttgtgctggtt
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| CDS seq | atggagtactcttacagctacaggttcatgcttgtatgctcagttcttgtactgtgccttaatactcggggtgcgagatgccagttatccgacgatttctacgactacatatgtcctgatgtgtacaccgttgtccagcagcatgtttatgctgccatgaggactgagatgaggatgggtgcctccctcctaaggctccatttccatgactgctttgtcaatagtggaggcccttactatgacgttcttctcggtagaagggatggtcttgtcgcaaatcaatcaggagctgacaacggcctcccttcaccgttcgaacccatcaaatcgatcatacagaagttcaatgatgtcggcctcgacacaaccgatgttgtcgtcctatcaggagggcacacgatcggacgagcccggtgcacgctgttcagcaaccggttgtcgaccacctcaagctcagccgacccgacgctggacgccaccatggccgccaacctccagagcctctgtgccggtggagacggcaacgagaccaccgtgctggacatcacctccgcctacgttttcgacaaccgctactaccagaacctcctcaatcagaaaggcctcctgtcctccgaccagggtctcttctccagcgacgacggcatcgccaacaccaaggagctggtggagacttacagcgccaatgcccacaagttcttctgggattttggcagatccatggtgaagatgggcaacatcagcccactcaccggtgacgacggccagattcgcaagaactgcagggttgttaattaa
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| Protein seq | MEYSYSYRFMLVCSVLVLCLNTRGARCQLSDDFYDYICPDVYTVVQQHVYAAMRTEMRMGASLLRLHFHDCFVNSGGPYYDVLLGRRDGLVANQSGADNGLPSPFEPIKSIIQKFNDVGLDTTDVVVLSGGHTIGRARCTLFSNRLSTTSSSADPTLDATMAANLQSLCAGGDGNETTVLDITSAYVFDNRYYQNLLNQKGLLSSDQGLFSSDDGIANTKELVETYSANAHKFFWDFGRSMVKMGNISPLTGDDGQIRKNCRVVN |
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| Function | Peroxidase N [UniProtKB/Swiss-Prot:Q42517] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0000430 | OsLima_10g0000430.01 | Chr10 | 721955 | 723710 | - | NAM | ||
| CDS seq | atggagtactcttacagctacaggttcatgcttgtatgctcagttcttgtactgtgccttaatactcggggtgcgagatgccagttatccgacgatttctacgactacatatgtcctgatgtgtacaccgttgtccagcagcatgtttatgctgccatgaggactgagatgaggatgggtgcctccctcctaaggctccatttccatgactgctttgtcaatagtggaggcccttactatgacgttcttctcggtagaagggatggtcttgtcgcaaatcaatcaggagctgacaacggcctcccttcaccgttcgaacccatcaaatcgatcatacagaagttcaatgatgtcggcctcgacacaaccgatgttgtcgtcctatcaggagggcacacgatcggacgagcccggtgcacgctgttcagcaaccggttgtcgaccacctcaagctcagccgacccgacgctggacgccaccatggccgccaacctccagagcctctgtgccggtggagacggcaacgagaccaccgtgctggacatcacctccgcctacgttttcgacaaccgctactaccagaacctcctcaatcagaaaggcctcctgtcctccgaccagggtctcttctccagcgacgacggcatcgccaacaccaaggagctggtggagacttacagcgccaatgcccacaagttcttctgggattttggcagatccatggtgaagatgggcaacatcagcccactcaccggtgacgacggccagattcgcaagaactgcagggttgttaattaa
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| Protein seq | MEYSYSYRFMLVCSVLVLCLNTRGARCQLSDDFYDYICPDVYTVVQQHVYAAMRTEMRMGASLLRLHFHDCFVNSGGPYYDVLLGRRDGLVANQSGADNGLPSPFEPIKSIIQKFNDVGLDTTDVVVLSGGHTIGRARCTLFSNRLSTTSSSADPTLDATMAANLQSLCAGGDGNETTVLDITSAYVFDNRYYQNLLNQKGLLSSDQGLFSSDDGIANTKELVETYSANAHKFFWDFGRSMVKMGNISPLTGDDGQIRKNCRVVN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0000430 | OsLima_10g0000430.02 | Chr10 | 722046 | 723747 | - | IsoSeq | ||
| CDS seq | atggagtactatttagtggaggcccttactatgacgttcttctcggtagaagggatggtcttgtcgcaaatcaatcaggagctgacaacggcctcccttcaccgttcgaacccatcaaatcgatcatacagaagttcaatgatgtcggcctcgacacaaccgatgttgtcgtcctatcaggagggcacacgatcggacgagcccggtgcacgctgttcagcaaccggttgtcgaccacctcaagctcagccgacccgacgctggacgccaccatggccgccaacctccagagcctctgtgccggtggagacggcaacgagaccaccgtgctggacatcacctccgcctacgttttcgacaaccgctactaccagaacctcctcaatcagaaaggcctcctgtcctccgaccagggtctcttctccagcgacgacggcatcgccaacaccaaggagctggtggagacttacagcgccaatgcccacaagttcttctgggattttggcagatcca
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| Protein seq | MEYYLVEALTMTFFSVEGMVLSQINQELTTASLHRSNPSNRSYRSSMMSASTQPMLSSYQEGTRSDEPGARCSATGCRPPQAQPTRRWTPPWPPTSRASVPVETATRPPCWTSPPPTFSTTATTRTSSIRKASCPPTRVSSPATTASPTPRSWWRLTAPMPTSSSGILADP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr10 | 723087 | 723489 | - | OsLima_10g0000430.02 | OsLima_10g0000430.01,OsLima_10g0000430.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.798080 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0109600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g02070 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0109600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000460 | RBH | 0.000000 | 42.368687 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000460 | RBH | 0.736628 | 26.130224 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000430 | RBH | 0.918900 | 48.453941 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000430 | RBH | 0.0 | 1.002757 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000390 | RBH | 0.0 | 40.071774 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0012700 | RBH | 0.2172345 | 152.082863 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000430 | RBH | 0.0 | 6.072168 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0011900 | RBH | 0.3111265 | 342.4396515 | 0.041857 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009720 | RBH | 0.0 | 0.320250 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000430 | RBH | 0.000000 | 240.442139 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000410 | RBH | 0.090275 | 53.135254 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000420 | RBH | 0.0 | 11.076064 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000420 | RBH | 0.370707 | 429.076569 | 0.0 |
