Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0020730 | OGI:09059740 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:23957795-23959443 | ||||||||
| Gene Symbol | RLCK284, OsRLCK284, YK12, PTK16, OsPTK16 | ||||||||||
| DNA seq | atgctggttgaggagcagagttggaggatcatccctctggttccaggattcgttcctgttggcgttggtggagggcccagcacaccataaatataatgggcatcttctgctgcttccagtccgaggacagaggaggcgacggggacggcgatggcgacggagcgcctccctcgacctcctctagcggctgcagcaacagcagcagcagcagcaagaagaagaatttagcgtcggagcggagcctgggcgggagcagcagggacaacaacagcaacctggtgaacctggtgaacgagatcgtggcagagtcaggtatcgtatgtactcctagttagttagctaagctactccatatatttacattttcggaatacaacaaacaaagaaacaaacattgtatattttcatggataaatgaacggacagtgacttaccggcacaagcgcgtggcggacgagatcctgaagatcggcaaggggaaggtgacggcgcgggcgttcacgtacggcgagctgtcggaggcgacgggcgggttcagggcggagtcgctgctgggggagggagggttcgggccggtgtaccgggggaggctgagcatcaaggggactgtgacggaggcggcggtgaagcagctggaccggaacgggatgcaggggaaccgggagttccttgtggaggtgctgatgctgagcctgctggcggagcacccaaacctggtgacgctgctggggtactgcaccgacggcgaccaccgcatcctggtgtacgagtacatggcccgcggctccctggaggaccacctgcttgacctgccccctggcgccgcggctctggactggaccactcggatgcgcatcgcgcagggcgccgcccgcggccttgagcacctgcacgacgctgctcgtccccccgtcatctaccgcgacttcaaggcctccaacatcctcctcgactcctccttccaggcccgcctctccgacttcggcctcgccaaggtcggccccgtcggcgacaagacccacgtctccacccgcgtcatgggcacctacggctactgcgcccccgagtacgctctcaccggcaagctcaccacctgctccgacgtctacagcttcggcgtcgtcttcctcgagatcatcaccggccgccgcgccatcgacatggcccgccctcacgatgagcagaacctcgtccagtgggccgccccgcgcttcaaggacaagaagctcttcgccgacatggccgaccccttgctccgcggcgcctaccccaccaagggcctctaccaggccctcgccatcgccgccatgtgcctccaggaggacgccaccatgcgccctgccatcagcgacgtcgtcaccgcgctcgaatacctcaccgtcgccggcgcctcctccgagcctgcccctcgtCcccagaagctgcagccgccggaggacgacgacgatgaccaacgCcccgccgcataatcaatcatatcgatcgtctctctctctctctctctatacatgtactaccactatctatataatatgtcatatacttctacttcacttatacagtatatagctacagcacctacctacatacatgctagcttaatttacgcacgtatgcatatacactcgatcgatacgattgactgtcct
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| CDS seq | atgctggttgaggagcagagttggaggatcatccctctggttccaggattcgttcctgttggcgttgtgacttaccggcacaagcgcgtggcggacgagatcctgaagatcggcaaggggaaggtgacggcgcgggcgttcacgtacggcgagctgtcggaggcgacgggcgggttcagggcggagtcgctgctgggggagggagggttcgggccggtgtaccgggggaggctgagcatcaaggggactgtgacggaggcggcggtgaagcagctggaccggaacgggatgcaggggaaccgggagttccttgtggaggtgctgatgctgagcctgctggcggagcacccaaacctggtgacgctgctggggtactgcaccgacggcgaccaccgcatcctggtgtacgagtacatggcccgcggctccctggaggaccacctgcttgacctgccccctggcgccgcggctctggactggaccactcggatgcgcatcgcgcagggcgccgcccgcggccttgagcacctgcacgacgctgctcgtccccccgtcatctaccgcgacttcaaggcctccaacatcctcctcgactcctccttccaggcccgcctctccgacttcggcctcgccaaggtcggccccgtcggcgacaagacccacgtctccacccgcgtcatgggcacctacggctactgcgcccccgagtacgctctcaccggcaagctcaccacctgctccgacgtctacagcttcggcgtcgtcttcctcgagatcatcaccggccgccgcgccatcgacatggcccgccctcacgatgagcagaacctcgtccagtgggccgccccgcgcttcaaggacaagaagctcttcgccgacatggccgaccccttgctccgcggcgcctaccccaccaagggcctctaccaggccctcgccatcgccgccatgtgcctccaggaggacgccaccatgcgccctgccatcagcgacgtcgtcaccgcgctcgaatacctcaccgtcgccggcgcctcctccgagcctgcccctcgtCcccagaagctgcagccgccggaggacgacgacgatgaccaacgCcccgccgcataa
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| Protein seq | MLVEEQSWRIIPLVPGFVPVGVVTYRHKRVADEILKIGKGKVTARAFTYGELSEATGGFRAESLLGEGGFGPVYRGRLSIKGTVTEAAVKQLDRNGMQGNREFLVEVLMLSLLAEHPNLVTLLGYCTDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRMRIAQGAARGLEHLHDAARPPVIYRDFKASNILLDSSFQARLSDFGLAKVGPVGDKTHVSTRVMGTYGYCAPEYALTGKLTTCSDVYSFGVVFLEIITGRRAIDMARPHDEQNLVQWAAPRFKDKKLFADMADPLLRGAYPTKGLYQALAIAAMCLQEDATMRPAISDVVTALEYLTVAGASSEPAPRPQKLQPPEDDDDDQRPAA |
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| Function | Probable serine/threonine-protein kinase PBL23 [UniProtKB/Swiss-Prot:F4JEQ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0020730 | OsLima_09g0020730.01 | Chr09 | 23957795 | 23959443 | + | NAM | ||
| CDS seq | atgctggttgaggagcagagttggaggatcatccctctggttccaggattcgttcctgttggcgttgtgacttaccggcacaagcgcgtggcggacgagatcctgaagatcggcaaggggaaggtgacggcgcgggcgttcacgtacggcgagctgtcggaggcgacgggcgggttcagggcggagtcgctgctgggggagggagggttcgggccggtgtaccgggggaggctgagcatcaaggggactgtgacggaggcggcggtgaagcagctggaccggaacgggatgcaggggaaccgggagttccttgtggaggtgctgatgctgagcctgctggcggagcacccaaacctggtgacgctgctggggtactgcaccgacggcgaccaccgcatcctggtgtacgagtacatggcccgcggctccctggaggaccacctgcttgacctgccccctggcgccgcggctctggactggaccactcggatgcgcatcgcgcagggcgccgcccgcggccttgagcacctgcacgacgctgctcgtccccccgtcatctaccgcgacttcaaggcctccaacatcctcctcgactcctccttccaggcccgcctctccgacttcggcctcgccaaggtcggccccgtcggcgacaagacccacgtctccacccgcgtcatgggcacctacggctactgcgcccccgagtacgctctcaccggcaagctcaccacctgctccgacgtctacagcttcggcgtcgtcttcctcgagatcatcaccggccgccgcgccatcgacatggcccgccctcacgatgagcagaacctcgtccagtgggccgccccgcgcttcaaggacaagaagctcttcgccgacatggccgaccccttgctccgcggcgcctaccccaccaagggcctctaccaggccctcgccatcgccgccatgtgcctccaggaggacgccaccatgcgccctgccatcagcgacgtcgtcaccgcgctcgaatacctcaccgtcgccggcgcctcctccgagcctgcccctcgtCcccagaagctgcagccgccggaggacgacgacgatgaccaacgCcccgccgcataa
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| Protein seq | MLVEEQSWRIIPLVPGFVPVGVVTYRHKRVADEILKIGKGKVTARAFTYGELSEATGGFRAESLLGEGGFGPVYRGRLSIKGTVTEAAVKQLDRNGMQGNREFLVEVLMLSLLAEHPNLVTLLGYCTDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRMRIAQGAARGLEHLHDAARPPVIYRDFKASNILLDSSFQARLSDFGLAKVGPVGDKTHVSTRVMGTYGYCAPEYALTGKLTTCSDVYSFGVVFLEIITGRRAIDMARPHDEQNLVQWAAPRFKDKKLFADMADPLLRGAYPTKGLYQALAIAAMCLQEDATMRPAISDVVTALEYLTVAGASSEPAPRPQKLQPPEDDDDDQRPAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0572600 | RBH | 0.0 | 0.101683 | 10.428986 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g39930 | RBH | 0.0 | 0.258967 | 2.555135 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0572600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0020640 | RBH | 0.0 | 0.0 | 3.576510 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0020690 | RBH | 0.0 | 0.616984 | 8.938727 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0020910 | RBH | 0.0 | 0.0 | 16.482660 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0020660 | RBH | 0.0 | 0.034759 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0020900 | RBH | 0.0 | 0.0 | 4.405363 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0377100 | RBH | 0.08858 | 0.9899625 | 0.069951 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0020480 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0020490 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0020520 | RBH | 0.0 | 0.0 | 0.437303 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0020650 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G021050 | RBH | 0.0 | 0.0 | 1.451280 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0020790 | RBH | 0.0 | 0.0 | 11.371537 |
