Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0020680 | OGI:09059610 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:23922980-23924383 | ||||||||
| Gene Symbol | RLCK283, OsRLCK283 | ||||||||||
| DNA seq | tttggtcaaagaaaaggtaagttcctccatccacgtacgaattgatgtttgtttgctagtccttggtttttcttgtcaggcagtaaatagtggatgaatttgataggaatcatgaatgaattagaggaaagaagaagagtagtttggcgggcggaattagtaccgaaacgaaagaaggcccaaataTtgagttgggccttggaaacatgagaagaGaagaagcagctgggcctcagcgcggggcgagcgagacagacgagaggtgggcctgcgggcgctgaagcgagtggtcccaagcccgtgagtcgaggtaggccttggatatctttccggcgacccacgtcatctccggcggtggcgaggcggaggcgcaccgcagccccacatccagcagcctctccgccaccgcctgcgggaacgagtcgcccagcctcctgtccacccagctcctcacccgcccgttggcccgcgccgccgccgccgtctcaaccaccgcctcccggacccggtacgtggtcgcctgctctccggacagcagctccagcagcagcagcccgaaggcgcgcacgtctgcctcccgcgacggctcctcctcatcttccaattccgccaactgcgccgcgcccatgtgcgtgagccgcgcgcggaggccGgggtcggagacgagcacggtggaggaggagacgcggccgtgcacggcggcggcatggtggtggatgtagtcgaggccttgggcgacgtcggcggctacctggacgcgggagagccaggtgcggagggcggtgaagctGgggttgcgagggctgcggaggcaggcgctcagcgtggcggcgcccgggggtaactcgtaggcgatgtacaggtgggctcccgcgacgcagccgcccagcaggggggcgaggctggtatggtggtacctggcggtggcggcgagtagcttgccggtcacggtgtcgcgtggaggtggtgcgcggcggagctggaagagggcggcgtggcggccgcgcagggtgcagggccagtaggtggaggccggggcgcgcttggcgaggaagttgttggtggcgccggcgacctcctggaacgggtagagcacgggcggatccgggagggaggcgcgggcggcggcaagggagcttgaactggaagacgcggcgctggctgtgctaccggagatcgacgaagaggccgggcccggccgccgggaagaggaggaggaggaagaggtggtggccgaggagcggcgggatcgggaagcaacggaggagacgggcactgcgtcggatctggacttgcacatctcaattcttcttcttcttccccaatccaatctaatccaatcctccccaactcccaattcgatctccgctcccctgtcctgctgctgctttttttttttgatag
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| CDS seq | atgtgcaagtccagatccgacgcagtgcccgtctcctccgttgcttcccgatcccgccgctcctcggccaccacctcttcctcctcctcctcttcccggcggccgggcccggcctcttcgtcgatctccggtagcacagccagcgccgcgtcttccagttcaagctcccttgccgccgcccgcgcctccctcccggatccgcccgtgctctacccgttccaggaggtcgccggcgccaccaacaacttcctcgccaagcgcgccccggcctccacctactggccctgcaccctgcgcggccgccacgccgccctcttccagctccgccgcgcaccacctccacgcgacaccgtgaccggcaagctactcgccgccaccgccaggtaccaccataccagcctcgcccccctgctgggcggctgcgtcgcgggagcccacctgtacatcgcctacgagttacccccgggcgccgccacgctgagcgcctgcctccgcagccctcgcaacccCagcttcaccgccctccgcacctggctctcccgcgtccaggtagccgccgacgtcgcccaaggcctcgactacatccaccaccatgccgccgccgtgcacggccgcgtctcctcctccaccgtgctcgtctccgacccCggcctccgcgcgcggctcacgcacatgggcgcggcgcagttggcggaattggaagatgaggaggagccgtcgcgggaggcagacgtgcgcgccttcgggctgctgctgctggagctgctgtccggagagcaggcgaccacgtaccgggtccgggaggcggtggttgagacggcggcggcggcgcgggccaacgggcgggtgaggagctgggtggacaggaggctgggcgactcgttcccgcaggcggtggcggagaggctgctggatgtggggctgcggtgcgcctccgcctcgccaccgccggagatgacgtgggtcgccggaaagatatccaaggcctacctcgactcacgggcttgggaccactcgcttcagcgcccgcaggcccacctctcgtctgtctcgctcgccccgcgctga
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| Protein seq | MCKSRSDAVPVSSVASRSRRSSATTSSSSSSSRRPGPASSSISGSTASAASSSSSSLAAARASLPDPPVLYPFQEVAGATNNFLAKRAPASTYWPCTLRGRHAALFQLRRAPPPRDTVTGKLLAATARYHHTSLAPLLGGCVAGAHLYIAYELPPGAATLSACLRSPRNPSFTALRTWLSRVQVAADVAQGLDYIHHHAAAVHGRVSSSTVLVSDPGLRARLTHMGAAQLAELEDEEEPSREADVRAFGLLLLELLSGEQATTYRVREAVVETAAAARANGRVRSWVDRRLGDSFPQAVAERLLDVGLRCASASPPPEMTWVAGKISKAYLDSRAWDHSLQRPQAHLSSVSLAPR |
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| Function | Chitin elicitor receptor kinase 1 [UniProtKB/Swiss-Prot:A8R7E6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0020680 | OsLima_09g0020680.01 | Chr09 | 23922980 | 23924383 | - | NAM | ||
| CDS seq | atgtgcaagtccagatccgacgcagtgcccgtctcctccgttgcttcccgatcccgccgctcctcggccaccacctcttcctcctcctcctcttcccggcggccgggcccggcctcttcgtcgatctccggtagcacagccagcgccgcgtcttccagttcaagctcccttgccgccgcccgcgcctccctcccggatccgcccgtgctctacccgttccaggaggtcgccggcgccaccaacaacttcctcgccaagcgcgccccggcctccacctactggccctgcaccctgcgcggccgccacgccgccctcttccagctccgccgcgcaccacctccacgcgacaccgtgaccggcaagctactcgccgccaccgccaggtaccaccataccagcctcgcccccctgctgggcggctgcgtcgcgggagcccacctgtacatcgcctacgagttacccccgggcgccgccacgctgagcgcctgcctccgcagccctcgcaacccCagcttcaccgccctccgcacctggctctcccgcgtccaggtagccgccgacgtcgcccaaggcctcgactacatccaccaccatgccgccgccgtgcacggccgcgtctcctcctccaccgtgctcgtctccgacccCggcctccgcgcgcggctcacgcacatgggcgcggcgcagttggcggaattggaagatgaggaggagccgtcgcgggaggcagacgtgcgcgccttcgggctgctgctgctggagctgctgtccggagagcaggcgaccacgtaccgggtccgggaggcggtggttgagacggcggcggcggcgcgggccaacgggcgggtgaggagctgggtggacaggaggctgggcgactcgttcccgcaggcggtggcggagaggctgctggatgtggggctgcggtgcgcctccgcctcgccaccgccggagatgacgtgggtcgccggaaagatatccaaggcctacctcgactcacgggcttgggaccactcgcttcagcgcccgcaggcccacctctcgtctgtctcgctcgccccgcgctga
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| Protein seq | MCKSRSDAVPVSSVASRSRRSSATTSSSSSSSRRPGPASSSISGSTASAASSSSSSLAAARASLPDPPVLYPFQEVAGATNNFLAKRAPASTYWPCTLRGRHAALFQLRRAPPPRDTVTGKLLAATARYHHTSLAPLLGGCVAGAHLYIAYELPPGAATLSACLRSPRNPSFTALRTWLSRVQVAADVAQGLDYIHHHAAAVHGRVSSSTVLVSDPGLRARLTHMGAAQLAELEDEEEPSREADVRAFGLLLLELLSGEQATTYRVREAVVETAAAARANGRVRSWVDRRLGDSFPQAVAERLLDVGLRCASASPPPEMTWVAGKISKAYLDSRAWDHSLQRPQAHLSSVSLAPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.117816 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0572100 | RBH | 1.267843 | 1.545730 | 0.300311 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g39860 | RBH | 0.300172 | 0.452756 | 0.070108 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0572100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0020590 | RBH | 0.0 | 0.0 | 0.275731 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0020640 | RBH | 0.0 | 1.134753 | 0.431869 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0020860 | RBH | 0.416674 | 1.582298 | 1.878069 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0020610 | RBH | 0.058992 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0020840 | RBH | 0.0 | 2.353594 | 4.824293 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0376600 | RBH | 0.1640865 | 1.396853 | 0.996863 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0024760 | RBH | 0.0 | 0.150155 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0020420 | RBH | 0.378561 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0020430 | RBH | 0.0 | 3.484691 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0020460 | RBH | 0.0 | 0.0 | 0.153651 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0020600 | RBH | 0.084093 | 1.975309 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G020990 | RBH | 0.0 | 0.0 | 0.437376 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0020730 | RBH | 0.0 | 3.090736 | 0.000000 |
