Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0019130 | OGI:09064050 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:22892860-22894994 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cccttctccttcccctttcctctccaaatccaatccacttcgcatcgcatcccacccacgaacgcttcgccgcttgataaaccaaattccccaccaccaccaccgccgcttcgttctcgccgatccggaggtaaatccatggtttgctgcctcgaaatgctgctcaaatctccgcgtgttgggttgtttgtgttggttctggagtgtgtgggttttgggttgttgtgttggttctgatcggttttgttcttactcgtagggctcgagatgaaggcgaggtcgaggtccagcaatggcgactccaggtgagttttgttggtggttttgtgcttgtgctcgtgggtggtttcggttcgttttggttggtttgggttttgatttggggtttttttgtggtgtttcgtgaaggctctcggtgaggaagaccaaggcggagaaggacccgaacaagccgaagaggccaccgagcgcgttcttcgtgttcatgtgagtcttagatccgtgggtttttgtgttggtggttctccgttcgaagtggttttgggcgttctgatcgatttgtgggtgttggtttctgcagggagcagttcaggaaggactacaaggagaagcaccccaacgtcaagcaggtctcggtggtaagcgtcgttttcctccgctgcgtctcttagtttcgaatggttgcgtggatttggctccggcattttgtgttctgacttggttttggtggaaatcgcagattggcaaggctggtggtgacaagtggaagtccatgactgatgctgtgagtttctcacttccccttatttgaactgctccatgtgcatttgcgctaattggtcgcgaattgaggaattgctcggtttctctgatgccgtgtctcgttctagatccgtttactcttgtgatgccagtgttgtccatgtctatgtattgctcgtatggatctaattgttgctgaggattaattttagcctgcttacttgtatcactgttgctggttcaacttcaaatatgtGgggaaaatgcacttaaatttgtttgctcatgggtaaattcagattgggggttatgtcgtagttgctgtgccttgtaaggtcggtcatacatgttcactaagttgaaattgctcctcgttccaatcctacaaatagatctgtaaattactgccctgccttacttggttaatgttaagtcagaatgttcaccgcgaagtcaaattctagtaaaattttgtagccatatgtactcaaccgcgatgtttaggcttgtatttggaacagtggtttcatcatttgtgctgatctgttgtctctgtcgtgtttgttgtgaatgctctgttagtgtttcagtccaccttgtgctttgcttagctcttacatttgaggtgttgaaacgatgcaggacaaagctcctttcgtgaccaaggcagagaagctcaaggctgagtacaccaagAagattgacgcctacaacaacaagcaggtaattccccctctccacaactctgcacctgcaactgtcatgacacattgaaactgatctgtgctctctggttgcgtttctcgttgtaggcaggaggcccggctacctcaggcgactctgacaagtccaagtccgaggtgaacgacgaggacgagggcagcgtaagacctccctccaatccgcaacaccgtgtcgctattaactcatcgatcttcttcttgtgtgacctcactgactgttttgtgtttgtgtatgtgcagggtgacgagtgatcgatggagctcccgcctccacagggctgcaggtagtagggaaagttctctcgagtcggcctaaccaaagtggacgttgctggttgctgctccttgctagtgttcggatgctgcctttagctttttagtcttagtggtctcatcctgtagcttagctctcatgtggtgtcctcgctctcttcggcatttgaccaccatcttgtcgtctgttttgtctcactgtctgtaatctaagtgagtactcgtatctgttgctgttttaaatctcagatctcagtagatggtgccatctgtgttagttgctgaagaggaaaaggaaaaATataacaagtctcttgcttcctgtttaatgatgcatccagatctgtcagttatttt
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| CDS seq | atgaaggcgaggtcgaggtccagcaatggcgactccaggctctcggtgaggaagaccaaggcggagaaggacccgaacaagccgaagaggccaccgagcgcgttcttcgtgttcatggagcagttcaggaaggactacaaggagaagcaccccaacgtcaagcaggtctcggtggacaaagctcctttcgtgaccaaggcagagaagctcaaggctgagtacaccaagAagattgacgcctacaacaacaagcaggcaggaggcccggctacctcaggcgactctgacaagtccaagtccgaggtgaacgacgaggacgagggcagcggtgacgagtga |
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| Protein seq | MKARSRSSNGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVDKAPFVTKAEKLKAEYTKKIDAYNNKQAGGPATSGDSDKSKSEVNDEDEGSGDE |
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| Function | HMG1/2-like protein [UniProtKB/Swiss-Prot:P40619] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0019130 | OsLima_09g0019130.01 | Chr09 | 22892860 | 22894989 | + | NAM | ||
| CDS seq | atgaaggcgaggtcgaggtccagcaatggcgactccaggctctcggtgaggaagaccaaggcggagaaggacccgaacaagccgaagaggccaccgagcgcgttcttcgtgttcatggagcagttcaggaaggactacaaggagaagcaccccaacgtcaagcaggtctcggtggacaaagctcctttcgtgaccaaggcagagaagctcaaggctgagtacaccaagAagattgacgcctacaacaacaagcaggcaggaggcccggctacctcaggcgactctgacaagtccaagtccgaggtgaacgacgaggacgagggcagcggtgacgagtga
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| Protein seq | MKARSRSSNGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVDKAPFVTKAEKLKAEYTKKIDAYNNKQAGGPATSGDSDKSKSEVNDEDEGSGDE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0019130 | OsLima_09g0019130.02 | Chr09 | 22892880 | 22894994 | + | IsoSeq | ||
| CDS seq | atgtggtgtcctcgctctcttcggcatttgaccaccatcttgtcgtctgttttgtctcactgt |
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| Protein seq | MWCPRSLRHLTTILSSVLSHC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr09 | 22893497 | 22894264 | + | OsLima_09g0019130.02 | OsLima_09g0019130.02,OsLima_09g0019130.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.250985 | 1.507374 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0551600 | RBH | 13.567581 | 12.582424 | 48.523014 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g37910 | RBH | 6.257572 | 5.917322 | 8.612673 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0551600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018960 | RBH | 2.641406 | 20.861160 | 62.117023 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0019050 | RBH | 1.774256 | 14.192121 | 11.112215 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0019260 | RBH | 10.361647 | 15.527248 | 34.933048 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0019020 | RBH | 0.835246 | 1.342955 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0019250 | RBH | 3.947046 | 54.261093 | 113.714195 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0370000 | RBH | 63.81797 | 55.879877 | 366.096695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0019020 | RBH | 0.802480 | 3.774840 | 6.902825 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0355700 | RBH | 49.19227 | 12.3072865 | 372.522812 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0018860 | RBH | 1.081625 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018830 | RBH | 5.536381 | 44.395931 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0018850 | RBH | 2.509577 | 0.0 | 13.336677 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0019000 | RBH | 2.515823 | 27.106573 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G019400 | RBH | 1.136636 | 22.994593 | 32.194603 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0019220 | RBH | 1.039519 | 24.084814 | 21.145912 |
