Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0018990 | OGI:09063910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:22803515-22807097 | ||||||||
| Gene Symbol | SDRLP-7 | ||||||||||
| DNA seq | tcatcgtccctctagatctgtgagagtcacggtgttgttagaattctgagcgccctggctaccatttcttccttgctctacttcattgttgttcctttgtgcaaaataagccggtctatttggagctgggagtgacttgcttcctttctccaagatgagcacaacatctgacatgagtggcctgtcattgagattctcctgaACacacaggagtgccacatggatgcaaagaatgacttcatccagtaagcagtttccagtgatagttgagtctatcataatctctgccttcccttcattccatagattccatgcctgcatccatcagatttacagctcaggtgtataagtgatcacaaattcataaaatggatctttggatctttgtataagtgattgcaaaatcataaaatggaatgcttacatagactggaagatttggggagtcctcaatgagatcaatagagcttatcttagaaccgcttactatctctagaagtaaaatgccgaagctgtagacatcggacttcattgaaaagataccccccatggcatattcaggagccatatagccactaattgaatcatacaacttcaaatagttagtccacacatagaattttaaaaaaaaggctaattaatttgtgcaaatggtttggacaatactcactatgttccaacaactcgtttagtgacttccttttgctggttgttgccgaaaatccttgccataccaaaatctgaaatctttgggttcatctctgcatccagcaaaatgttgcttgccttaagatctctatggataattgttaatcttgaatcttgatggaggtaaagaagtcctcgggcaatccctatgacgatcttgaaccgtgtagaccagtccaacactgattttattttaccctctacaaataagcaacactattgattaacatccactattttgtgtagtacttcagcaacttgtggtgtggtagtagaacatactgaaaagagaagcatccaagctcttgttgggcatatactcataaatcagcaacttttcatctccttcgatgctgcaaccgacaagtcgaacaaggtttctgtgctgtagtttggcaattaggactacctcatttctgaactccactattccttgttcagaccaactgctaagtcttttgactgcaacttcccggccatctaacactcccttcagaaatataaaagaaacatcatcACTGAatacagtcacatgttgtattttgaatgattttcttcttcttttttttttttgagaaatttacatcacgccgtaaactttgggtgcttgttcatctgaaagttcaggaggatcagcttgactctgcattttctttcttcagaaattatctagaccaGggtatgaatcagttaccttgtaaactttgccaaaacctccttttccaatcaaagatgcttcagaaaagttgtctgttgcaactaggatcttgtcatattcaacaaatggaaactcaagatctttggctgggatttcctgcccaagttcatcagaaatgctcaaaactcgcaaggcccgcctcttgttattctccccatatttttttcttgataatttcttcattcacgaagaaaaaaaggcaaggtattaatgcattgaacatgtatcacctttcccatgggcctaaagtactaaacttcatgaaaataaatatgtgtacctttgatcttgggagcacatattaaaatgcatatgggtataagaacacttgctaaaactattggaagtgcaaatctcagtgcacttgtccttggcttcctaccagcaaagtaagaaccttgattaatttgcatcaagctaactagtgtttgaaatacttttgcaaagcatatataattccactctatatatgaaattgtgatcagttttttcttcttatagagttttttataaaaatatttacagaggatcagtagtactgttgagACAaggctgcagaacaaaatcccaaacaaatgatgataaatgtgtagtggtgtgtgtctttcgtgtaatcttaaaataaaaaaaaaatccaaacaccaggtacatatcagggttttaaatctccagctatagttgtctctatctccgacaataacttgtctgagaagagttctactccatccgtttcatattataatactttctagcattgctcatatttatatagatattaatgaatttatacacatatatgtctagattcattaacacatatatgaatgtggggaatgttagaaagtcttataatatgaaacggaggtagtagctatttgctctcatatacaattaaccgctatagctccatttagcttgctatgccttagcccgctattttaaacactggtgcgtacatatacatacctgcacctgcaagccggaggtagagcgtctcaccaaagtcaccccatgtcccgaccaccttctccatgtccaccaagtcgccgccccaaaccaaacacctcgtcgcatccctcgtggagctcccggtgaggttggcgtaggcgtacgccacgcaggagcagttccggcggcactccgccgcgcactcgtcgtagctccggttgcccacgtgcaggtaccagtcgggcagcttcaggttcgccaccgccacgaacccGtcgccgcaccgcaccgcctccctccgccggcacccgagcgcgaagtcgccgcggctccagccggcggcgctcaccggctcgaaccccgggaggcagtagcacgtcgaggcggtggccgtgacgtcgccgcagtagccgaacgggccgcaggagccgaacgcgctgcacgcgcgggtggggtacttggcgagcgtggcccacgacgacgtctcgttgctccagccctgcaggcggaggtcgccggcgtagcccagcgtgtactgCATcggcggcgcgccgtcggacagtgtgaacgcggcgtagatctcctcgtcggtggacacgacggcggtgtagatcgccgacctgccgcccttctggtagttgctgtccaccatgtagcccttccatgggttggtgcgccagtacacgcgcgagcctttccagatgaccgcctgcagcggccggtccgggtcgccgccgaaggagaagttccccggcgacgggtcggtggcgcccttccatgagaccagccgcacgccgccgcgcgtccggtaggtgacgccgatcttcatgccgggcaggaacgcgttgccggggtgctcgaacgtctcccacaaggcggtgccgtccggcagccggagcatgaggttgccggagttcgcgagcaccgccacagcaccgactcctcctcccgatgacgccgacgagttcacgccggcggtgacgttagtcttccaaaggacgcggccggtggcgccatcggacaagaccaggttgccgtcgctagaacggcgagcgtggaggccggggaggaaggatggtcggcgatgggcgccgcctggtcggcgacccacacgacggtgagcttggggatgttgttgtaccatattccgaggtaaagacccgacgaggtagcattagtggagttggacgacggcgaaaagaagcccat
More
|
||||||||||
| CDS seq | atgggcttcttttcgccgtcgtccaactccactaatgctacctcgtcgggtctttacctcggaatatggtacaacaacatccccaagctcaccgtcgtgtgggtcgccgaccaggcggcgcccatcgccgaccatccttcctccccggcctccacgctcgccactaacgtcaccgccggcgtgaactcgtcggcgtcatcgggaggaggagtcggtgctgtggcggtgctcgcgaactccggcaacctcatgctccggctgccggacggcaccgccttgtgggagacgttcgagcaccccggcaacgcgttcctgcccggcatgaagatcggcgtcacctaccggacgcgcggcggcgtgcggctggtctcatggaagggcgccaccgacccgtcgccggggaacttctccttcggcggcgacccggaccggccgctgcaggcggtcatctggaaaggctcgcgcgtgtactggcgcaccaacccatggaagggctacatggtggacagcaactaccagaagggcggcaggtcggcgatctacaccgccgtcgtgtccaccgacgaggagatctacgccgcgttcacactgtccgacggcgcgccgccgATGcagtacacgctgggctacgccggcgacctccgcctgcagggctggagcaacgagacgtcgtcgtgggccacgctcgccaagtaccccacccgcgcgtgcagcgcgttcggctcctgcggcccgttcggctactgcggcgacgtcacggccaccgcctcgacgtgctactgcctcccggggttcgagccggtgagcgccgccggctggagccgcggcgacttcgcgctcgggtgccggcggagggaggcggtgcggtgcggcgaCgggttcgtggcggtggcgaacctgaagctgcccgactggtacctgcacgtgggcaaccggagctacgacgagtgcgcggcggagtgccgccggaactgctcctgcgtggcgtacgcctacgccaacctcaccgggagctccacgagggatgcgacgaggtgtttggtttggggcggcgacttggtggacatggagaaggaaatcccagccaaagatcttgagtttccatttgttgaatatgacaagatcctagttgcaacagacaacttttctgaagcatctttgattggaaaaggaggttttggcaaagtttacaaggagaatctcaatgacaggccactcatgtcagatgttgtgctcatcttggagaaaggaagcaagtcactcccagctccaaatagaccggcttattttgcacaaaggaacaacaatgaagtagagcaaggaagaaatggtagccagggcgctcagaattctaacaacaccgtgactctcacagatctagagggacgatga
More
|
||||||||||
| Protein seq | MGFFSPSSNSTNATSSGLYLGIWYNNIPKLTVVWVADQAAPIADHPSSPASTLATNVTAGVNSSASSGGGVGAVAVLANSGNLMLRLPDGTALWETFEHPGNAFLPGMKIGVTYRTRGGVRLVSWKGATDPSPGNFSFGGDPDRPLQAVIWKGSRVYWRTNPWKGYMVDSNYQKGGRSAIYTAVVSTDEEIYAAFTLSDGAPPMQYTLGYAGDLRLQGWSNETSSWATLAKYPTRACSAFGSCGPFGYCGDVTATASTCYCLPGFEPVSAAGWSRGDFALGCRRREAVRCGDGFVAVANLKLPDWYLHVGNRSYDECAAECRRNCSCVAYAYANLTGSSTRDATRCLVWGGDLVDMEKEIPAKDLEFPFVEYDKILVATDNFSEASLIGKGGFGKVYKENLNDRPLMSDVVLILEKGSKSLPAPNRPAYFAQRNNNEVEQGRNGSQGAQNSNNTVTLTDLEGR |
||||||||||
| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [UniProtKB/Swiss-Prot:O81832] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0018990 | OsLima_09g0018990.01 | Chr09 | 22803515 | 22807097 | - | NAM | ||
| CDS seq | atgggcttcttttcgccgtcgtccaactccactaatgctacctcgtcgggtctttacctcggaatatggtacaacaacatccccaagctcaccgtcgtgtgggtcgccgaccaggcggcgcccatcgccgaccatccttcctccccggcctccacgctcgccactaacgtcaccgccggcgtgaactcgtcggcgtcatcgggaggaggagtcggtgctgtggcggtgctcgcgaactccggcaacctcatgctccggctgccggacggcaccgccttgtgggagacgttcgagcaccccggcaacgcgttcctgcccggcatgaagatcggcgtcacctaccggacgcgcggcggcgtgcggctggtctcatggaagggcgccaccgacccgtcgccggggaacttctccttcggcggcgacccggaccggccgctgcaggcggtcatctggaaaggctcgcgcgtgtactggcgcaccaacccatggaagggctacatggtggacagcaactaccagaagggcggcaggtcggcgatctacaccgccgtcgtgtccaccgacgaggagatctacgccgcgttcacactgtccgacggcgcgccgccgATGcagtacacgctgggctacgccggcgacctccgcctgcagggctggagcaacgagacgtcgtcgtgggccacgctcgccaagtaccccacccgcgcgtgcagcgcgttcggctcctgcggcccgttcggctactgcggcgacgtcacggccaccgcctcgacgtgctactgcctcccggggttcgagccggtgagcgccgccggctggagccgcggcgacttcgcgctcgggtgccggcggagggaggcggtgcggtgcggcgaCgggttcgtggcggtggcgaacctgaagctgcccgactggtacctgcacgtgggcaaccggagctacgacgagtgcgcggcggagtgccgccggaactgctcctgcgtggcgtacgcctacgccaacctcaccgggagctccacgagggatgcgacgaggtgtttggtttggggcggcgacttggtggacatggagaaggaaatcccagccaaagatcttgagtttccatttgttgaatatgacaagatcctagttgcaacagacaacttttctgaagcatctttgattggaaaaggaggttttggcaaagtttacaaggagaatctcaatgacaggccactcatgtcagatgttgtgctcatcttggagaaaggaagcaagtcactcccagctccaaatagaccggcttattttgcacaaaggaacaacaatgaagtagagcaaggaagaaatggtagccagggcgctcagaattctaacaacaccgtgactctcacagatctagagggacgatga
More
|
|||||||
| Protein seq | MGFFSPSSNSTNATSSGLYLGIWYNNIPKLTVVWVADQAAPIADHPSSPASTLATNVTAGVNSSASSGGGVGAVAVLANSGNLMLRLPDGTALWETFEHPGNAFLPGMKIGVTYRTRGGVRLVSWKGATDPSPGNFSFGGDPDRPLQAVIWKGSRVYWRTNPWKGYMVDSNYQKGGRSAIYTAVVSTDEEIYAAFTLSDGAPPMQYTLGYAGDLRLQGWSNETSSWATLAKYPTRACSAFGSCGPFGYCGDVTATASTCYCLPGFEPVSAAGWSRGDFALGCRRREAVRCGDGFVAVANLKLPDWYLHVGNRSYDECAAECRRNCSCVAYAYANLTGSSTRDATRCLVWGGDLVDMEKEIPAKDLEFPFVEYDKILVATDNFSEASLIGKGGFGKVYKENLNDRPLMSDVVLILEKGSKSLPAPNRPAYFAQRNNNEVEQGRNGSQGAQNSNNTVTLTDLEGR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0550300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g37780 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0550300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018890 | SBH | 0.0 | 0.0 | 0.130042 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0019000 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0019180 | RBH | 0.000000 | 0.000000 | 0.993252 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018950 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0019120 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0368700 | SBH | 2.5226685 | 5.99005 | 3.161246 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018890 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0355500 | SBH | 0.0280205 | 0.024872 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0019050 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0018750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018740 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0018730 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0018870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G019280 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0019100 | RBH | 0.0 | 0.0 | 0.0 |
