Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0018520 | OGI:09062850 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:22412325-22413765 | ||||||||
| Gene Symbol | OsAT4c, AT4c | ||||||||||
| DNA seq | ggggcacgaggcagtgtgtgcagcagcatcaaacgcctcacctgcacgagcaaacgaacAaaaaaaaacgttgctggaaataatggaggtgaaggtgttgagctctaggctggtcaggccgtcgtacccggcgtcggcggcggcgccggaggaggagttcgtgccgtcgtcgatgttcgacaaggtgacgtacgacatgcagatggccatcatctacgcgttccggccgccggggccctccgtggccgacatcgagaaggggctcgccgcggtgctcggcgtctaccgcctcttcgccggacaggtggtccgcggcggcggcggcgagctgcggggcgtcgtgctgaatgaccatggggccaggctggtcgaggcctgcgtggatggtagcctcgccgacatcgcaccggcgaagccgtcgccggtggtgctgcggctgcatcccagcctcgagggggagatcgaggaggtcgtgcaggtgcagctcacgcggttcgcgtgcggctcgctggccgtcgggttcacggcgaaccacgccgtcgcggatgggcacgccaccagcgacttcctcgtcgcgtggggccgcgccgcgcgtgggctcgccgtggccgccacggcggcggcgccgccgcaccaccacccGgggatgttccggccacgcgacccgccgctcgtcgagttcgagcaccgcggcgtggagtactaccgcccgccgccgccggcggccggtgtcgacggcgatgtcggcggcgaccacaagcagcagcacgggcacggcggcgaggaggcgagccacgggatcgtgatccacaaggcgcacttcaccaaggacttcatcgcgaggctccgcgcggcggcgtcggaggggcgcggccggccgttcagccggttcgagaccatcctcgcccacgtgtggcgcaccatgacgcgggcgcgggggctcggcaacccgctccagagctccaccatccgcatctccgtcgacggccggcagcggctgtcggcgccgGCggggtacttcggcaacctcgtcctctgggcgttcccgcgcgccaccgtgggggacctcctcgggcggccgctgaagcacgcggcgcaggtgatccacgacgccgtcgcccgcgccgacgccgcctacttccggtcgttcgtcgacttcgcgagctccggcgccgtcgagggcgaGGggctcgccccgaccGccgtgctcaaggacgtgctgtgccccgacctggaggtggacagctggctcaccttcccgttctacgagctcgacttcggcggcggctgcccgacctacttcatgccgtcctacttcccgacggaggggatgctgttcctggtgccgtcgtacctcggcgacggcagcgtcgacgccttcgtccccgtcttcgaccacaacctcgaggcattcaagcagagctgctactccatagagtag
More
|
||||||||||
| CDS seq | atggaggtgaaggtgttgagctctaggctggtcaggccgtcgtacccggcgtcggcggcggcgccggaggaggagttcgtgccgtcgtcgatgttcgacaaggtgacgtacgacatgcagatggccatcatctacgcgttccggccgccggggccctccgtggccgacatcgagaaggggctcgccgcggtgctcggcgtctaccgcctcttcgccggacaggtggtccgcggcggcggcggcgagctgcggggcgtcgtgctgaatgaccatggggccaggctggtcgaggcctgcgtggatggtagcctcgccgacatcgcaccggcgaagccgtcgccggtggtgctgcggctgcatcccagcctcgagggggagatcgaggaggtcgtgcaggtgcagctcacgcggttcgcgtgcggctcgctggccgtcgggttcacggcgaaccacgccgtcgcggatgggcacgccaccagcgacttcctcgtcgcgtggggccgcgccgcgcgtgggctcgccgtggccgccacggcggcggcgccgccgcaccaccacccGgggatgttccggccacgcgacccgccgctcgtcgagttcgagcaccgcggcgtggagtactaccgcccgccgccgccggcggccggtgtcgacggcgatgtcggcggcgaccacaagcagcagcacgggcacggcggcgaggaggcgagccacgggatcgtgatccacaaggcgcacttcaccaaggacttcatcgcgaggctccgcgcggcggcgtcggaggggcgcggccggccgttcagccggttcgagaccatcctcgcccacgtgtggcgcaccatgacgcgggcgcgggggctcggcaacccgctccagagctccaccatccgcatctccgtcgacggccggcagcggctgtcggcgccgGCggggtacttcggcaacctcgtcctctgggcgttcccgcgcgccaccgtgggggacctcctcgggcggccgctgaagcacgcggcgcaggtgatccacgacgccgtcgcccgcgccgacgccgcctacttccggtcgttcgtcgacttcgcgagctccggcgccgtcgagggcgaGGggctcgccccgaccGccgtgctcaaggacgtgctgtgccccgacctggaggtggacagctggctcaccttcccgttctacgagctcgacttcggcggcggctgcccgacctacttcatgccgtcctacttcccgacggaggggatgctgttcctggtgccgtcgtacctcggcgacggcagcgtcgacgccttcgtccccgtcttcgaccacaacctcgaggcattcaagcagagctgctactccatagagtag
More
|
||||||||||
| Protein seq | MEVKVLSSRLVRPSYPASAAAPEEEFVPSSMFDKVTYDMQMAIIYAFRPPGPSVADIEKGLAAVLGVYRLFAGQVVRGGGGELRGVVLNDHGARLVEACVDGSLADIAPAKPSPVVLRLHPSLEGEIEEVVQVQLTRFACGSLAVGFTANHAVADGHATSDFLVAWGRAARGLAVAATAAAPPHHHPGMFRPRDPPLVEFEHRGVEYYRPPPPAAGVDGDVGGDHKQQHGHGGEEASHGIVIHKAHFTKDFIARLRAAASEGRGRPFSRFETILAHVWRTMTRARGLGNPLQSSTIRISVDGRQRLSAPAGYFGNLVLWAFPRATVGDLLGRPLKHAAQVIHDAVARADAAYFRSFVDFASSGAVEGEGLAPTAVLKDVLCPDLEVDSWLTFPFYELDFGGGCPTYFMPSYFPTEGMLFLVPSYLGDGSVDAFVPVFDHNLEAFKQSCYSIE |
||||||||||
| Function | Putrescine hydroxycinnamoyltransferase [UniProtKB/Swiss-Prot:Q7XXN4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0018520 | OsLima_09g0018520.01 | Chr09 | 22412325 | 22413765 | + | NAM | ||
| CDS seq | atggaggtgaaggtgttgagctctaggctggtcaggccgtcgtacccggcgtcggcggcggcgccggaggaggagttcgtgccgtcgtcgatgttcgacaaggtgacgtacgacatgcagatggccatcatctacgcgttccggccgccggggccctccgtggccgacatcgagaaggggctcgccgcggtgctcggcgtctaccgcctcttcgccggacaggtggtccgcggcggcggcggcgagctgcggggcgtcgtgctgaatgaccatggggccaggctggtcgaggcctgcgtggatggtagcctcgccgacatcgcaccggcgaagccgtcgccggtggtgctgcggctgcatcccagcctcgagggggagatcgaggaggtcgtgcaggtgcagctcacgcggttcgcgtgcggctcgctggccgtcgggttcacggcgaaccacgccgtcgcggatgggcacgccaccagcgacttcctcgtcgcgtggggccgcgccgcgcgtgggctcgccgtggccgccacggcggcggcgccgccgcaccaccacccGgggatgttccggccacgcgacccgccgctcgtcgagttcgagcaccgcggcgtggagtactaccgcccgccgccgccggcggccggtgtcgacggcgatgtcggcggcgaccacaagcagcagcacgggcacggcggcgaggaggcgagccacgggatcgtgatccacaaggcgcacttcaccaaggacttcatcgcgaggctccgcgcggcggcgtcggaggggcgcggccggccgttcagccggttcgagaccatcctcgcccacgtgtggcgcaccatgacgcgggcgcgggggctcggcaacccgctccagagctccaccatccgcatctccgtcgacggccggcagcggctgtcggcgccgGCggggtacttcggcaacctcgtcctctgggcgttcccgcgcgccaccgtgggggacctcctcgggcggccgctgaagcacgcggcgcaggtgatccacgacgccgtcgcccgcgccgacgccgcctacttccggtcgttcgtcgacttcgcgagctccggcgccgtcgagggcgaGGggctcgccccgaccGccgtgctcaaggacgtgctgtgccccgacctggaggtggacagctggctcaccttcccgttctacgagctcgacttcggcggcggctgcccgacctacttcatgccgtcctacttcccgacggaggggatgctgttcctggtgccgtcgtacctcggcgacggcagcgtcgacgccttcgtccccgtcttcgaccacaacctcgaggcattcaagcagagctgctactccatagagtag
More
|
|||||||
| Protein seq | MEVKVLSSRLVRPSYPASAAAPEEEFVPSSMFDKVTYDMQMAIIYAFRPPGPSVADIEKGLAAVLGVYRLFAGQVVRGGGGELRGVVLNDHGARLVEACVDGSLADIAPAKPSPVVLRLHPSLEGEIEEVVQVQLTRFACGSLAVGFTANHAVADGHATSDFLVAWGRAARGLAVAATAAAPPHHHPGMFRPRDPPLVEFEHRGVEYYRPPPPAAGVDGDVGGDHKQQHGHGGEEASHGIVIHKAHFTKDFIARLRAAASEGRGRPFSRFETILAHVWRTMTRARGLGNPLQSSTIRISVDGRQRLSAPAGYFGNLVLWAFPRATVGDLLGRPLKHAAQVIHDAVARADAAYFRSFVDFASSGAVEGEGLAPTAVLKDVLCPDLEVDSWLTFPFYELDFGGGCPTYFMPSYFPTEGMLFLVPSYLGDGSVDAFVPVFDHNLEAFKQSCYSIE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.168645 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0544000 | RBH | 0.0 | 0.0 | 0.320097 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g37200 | RBH | 0.0 | 0.0 | 0.082399 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0544000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018390 | RBH | 0.103079 | 10.655209 | 0.860292 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0018460 | RBH | 0.0 | 0.746293 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0018680 | RBH | 0.0 | 1.805547 | 0.359054 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018440 | RBH | 0.0 | 0.128063 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0018640 | RBH | 0.0 | 4.792634 | 0.537858 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0360700 | RBH | 0.194587 | 6.886065 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018390 | RBH | 0.0 | 0.704567 | 0.065548 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0348200 | RBH | 0.925075 | 3.3800055 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023120 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0018270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018260 | RBH | 0.0 | 4.381857 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0018250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0018390 | RBH | 0.0 | 2.851835 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G018780 | RBH | 0.0 | 1.722927 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018640 | RBH | 0.0 | 5.295779 | 0.0 |
