Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0016930 | OGI:09059270 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:21263104-21266999 | ||||||||
| Gene Symbol | BZIP76, OsbZIP76, DLN229, OsDLN229 | ||||||||||
| DNA seq | gcctcctcctcctcctctcctagtccttgcacccctaacatggaggatgatcctacacgccgcctctcgttgttaggcggaagcagcggcgagcaccagcctCccatggtgtcgccatgcatctccgcccttgtagatctagcctccCAccgccgctctctcccttcctcggtcctcttgcccccgttccatcctatgcctgtttgtttctgctcttcaaggggcccgggcttcttccactatcacatgcccccgacactgactcccacggtaggaggagtcggcgacgggtcccatcacatttacccgttctccgatttccctttcttttccatggactccatagctctacccacaaacgcccatttggctgggtcaacggtaataccactcacctcatctttgataggattcaatgaagggctgcccggccagccaccgctttgggaagggtataggcggttgcaaagtgacctcaatgtagggtttccacagccaaacctgcaaatgctacctttagcaccggttaagctggagcccgtgaccgaggagcatcaatcaaggggcaaaagtgtcatcatcgccgacaacctcgtcgactcaaacatggtacagtattttaatgatacctatcttttttcccgtaactttttttatttattatcgctatcactgcttcccctccagtagatatgatatcattgatggtattcgtgagcttgtttatggttctttactttacaagaacaaaattttctctagtgccattatttctactcctatagctattgacttgcagttatattcaagtttgaaagctgcatttgttgatgaatcattatagactttttaccagggctcaaacatgctgctcggctcctccagcaatgccaaccaagatcagattcaccagctaggcagccaagatcgcatcctacaagaacatcgccgtatcgagaccaccgagaacgaagctaacgacagcatgtgtggcagcagcagcatgccccaccgtcgccgcaactcgtcagtgggcagcagccgcatgacgaggaacctcgatcccggagccggcagctcgtcgtcgcacggtggaaatggacccgttgttggtgacactgctgctgctgccaacctcggcgatggggagttcagtgaggctgacaagaagacgatcatggcgagtgagtacctctcgcagctcgtgttgagtgatccgaagaaggtcaagaggtgagaactttcgaatctaaaagagttcatgtggagggattgaggctcccatcggatggcctaatcagccaaagaaaaagctaaattttaaattttcaaacttaattttaagattgattttgagatattttcaacgtagattcttttacagcattggcttttaaatcactaagaacacatttataaaagtttcacctacaaattcatttttatttcataataagccgttttggcttattaggaaataagccaaacgatgggacctgatggtgtctgttgtgtgttctataattagttactgaaattgcacatattgctgaataaatttttcagggttctatgcaataggagatctgctgcgaggtccaaggagcgcaggttgaactataagcttgagcttgaaagtaaggtgctggtgttgaagatagagattgagaagttgtctgaaaaattggcgacggctcaggtttgtttttttaagattgtggtcattctgatttggagttttgatcattttaaattactgatgtagtattgttttgcagaggacatttaatgagcttttagctcaaaacaatgagctgaaaatcaagatacaagaaacgggtagggaacgccagatgaaagaaggtaagctcccttcccttgtttaatagcatttatttgttcattttcctcaaatggtgattgaaatatatggtagcttgcaatggaaacatgatgcagatgtcatatatgttggataccaaatgcccaatgcaagattgccaaataggcatatgtatgcttgcatcctttttaaggaagtatgtagcttgcgtgaatagctaggttactgcactcttttatatcacaaaacatggtgatcatacttgatgccttgatggtatacttcttttgtagctactgggttcaaacaatagatgcatactcttgctttgtattttcacattgttcctgctttgttggtctgtctatttaggacttcaggagtgaaaagttttTGCgtgtcatatcggatatacggacacacatttgaattattaaatgtagtctaataacaaaacaaattacatattccacctacaaactgcgagacgaatttattaagcctaattaatctgtcattagtaaatgtttactgtagcaccacattgtcaaatcatggtgcaattaggcttaaaagattcgtctcgcaatttacataaaatctgtgtaattagtttttttatatttaatacttcatgcatgtatccaaacattcgatgtgatatggtgaaaattttttgtttgggactaaacaggcccttattttaactctctattcattaactcggtgaaagaatctcccaattgatttgcagcttgttgtcaaaatgtgcttgtctccttttagttttcaatgattgcattcccagatagttgtctcacttatgtgcaccatatatggcttgagtcatgcttagtttggatagcggtctagtttttggattaatttgctcataatttttcctttaatactccctttgtcccaaattataaggcctataTtttttacacggtattcaacaacatactttgaccattattttattatgttctatgttctcaacaaatatgaaattagcaagtacttcaaaatatgaatctagtgatataacatgcataatacttagtcacatgcataatacttagtatagatataattactatgattattagtcaaaagctaccaagtttaattttccttaaaaggggacgccctataatttggaacggagggagcatataattacctctctttagtggggtatgtgtgcttggttatgtgtgcatcttagttatacagagattgagaatgttttcagtgcaattgtatctccttggtgtaattgattaagttcaatgaagccaatgtctaaaaatgttttatatttcatttacaaggaccaaatttgcattgctggaactttttctttggcttgttcagtcactagtttaccttgtagaacTAttttattagaaaaaaaatcagtcactagtttaacattggtttgcctgtttattttgtatccagctatattcaaatcaataggttatgagtcacttcaagttgttgttgatggtgagttcgtcatgccaaatggtacacacgaagaaacggtcgctcggttgatcgaactgctggagccagaaacacaggctggaccatcacaaatccagggatatcagccataacaaagtttgaagcgttagggtgatttctgatgagaggaaacttttgaaaggggaatgtcaaactatactgcagattcaaacatgaattcgcttagacagccgaaccAatagataattcatctattactgagtgttgtgctacagttattttgctaaaagtttgggtgaactgacacccatgtgggcttctgtaatatcaaatttgcctgaatctgtaccgatgttttaattagaatcatcagttcattttggggattttattagtgtgtttaatttctagttttgaccaaagctgtggctaggcttcaacttctgtgctagtacatttttttttttttgctttagttcgaaagtctggtatatgctgcaggtacaaggtagactttggttttgcattttccctgttttctactgtcagctggtac
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| CDS seq | atggaggatgatcctacacgccgcctctcgttgttaggcggaagcagcggcgagcaccagcctCccatggtgtcgccatgcatctccgcccttgtagatctagcctccCAccgccgctctctcccttcctcggtcctcttgcccccgttccatcctatgcctgtttgtttctgctcttcaaggggcccgggcttcttccactatcacatgcccccgacactgactcccacggtaggaggagtcggcgacgggtcccatcacatttacccgttctccgatttccctttcttttccatggactccatagctctacccacaaacgcccatttggctgggtcaacggtaataccactcacctcatctttgataggattcaatgaagggctgcccggccagccaccgctttgggaagggtataggcggttgcaaagtgacctcaatgtagggtttccacagccaaacctgcaaatgctacctttagcaccggttaagctggagcccgtgaccgaggagcatcaatcaaggggcaaaagtgtcatcatcgccgacaacctcgtcgactcaaacatgggctcaaacatgctgctcggctcctccagcaatgccaaccaagatcagattcaccagctaggcagccaagatcgcatcctacaagaacatcgccgtatcgagaccaccgagaacgaagctaacgacagcatgtgtggcagcagcagcatgccccaccgtcgccgcaactcgtcagtgggcagcagccgcatgacgaggaacctcgatcccggagccggcagctcgtcgtcgcacggtggaaatggacccgttgttggtgacactgctgctgctgccaacctcggcgatggggagttcagtgaggctgacaagaagacgatcatggcgagtgagtacctctcgcagctcgtggttctatgcaataggagatctgctgcgaggtccaaggagcgcaggttgaactataagcttgagcttgaaagtaaggtgctggtgttgaagatagagattgagaagttgtctgaaaaattggcgacggctcagaggacatttaatgagcttttagctcaaaacaatgagctgaaaatcaagatacaagaaacgggtagggaacgccagatgaaagaagctatattcaaatcaataggttatgagtcacttcaagttgttgttgatggtgagttcgtcatgccaaatggtacacacgaagaaacggtcgctcggttgatcgaactgctggagccagaaacacaggctggaccatcacaaatccagggatatcagccataa
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| Protein seq | MEDDPTRRLSLLGGSSGEHQPPMVSPCISALVDLASHRRSLPSSVLLPPFHPMPVCFCSSRGPGFFHYHMPPTLTPTVGGVGDGSHHIYPFSDFPFFSMDSIALPTNAHLAGSTVIPLTSSLIGFNEGLPGQPPLWEGYRRLQSDLNVGFPQPNLQMLPLAPVKLEPVTEEHQSRGKSVIIADNLVDSNMGSNMLLGSSSNANQDQIHQLGSQDRILQEHRRIETTENEANDSMCGSSSMPHRRRNSSVGSSRMTRNLDPGAGSSSSHGGNGPVVGDTAAAANLGDGEFSEADKKTIMASEYLSQLVVLCNRRSAARSKERRLNYKLELESKVLVLKIEIEKLSEKLATAQRTFNELLAQNNELKIKIQETGRERQMKEAIFKSIGYESLQVVVDGEFVMPNGTHEETVARLIELLEPETQAGPSQIQGYQP |
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| Function | Transcription factor RF2b [UniProtKB/Swiss-Prot:Q6S4P4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0016930 | OsLima_09g0016930.01 | Chr09 | 21263104 | 21266999 | + | NAM | ||
| CDS seq | atggaggatgatcctacacgccgcctctcgttgttaggcggaagcagcggcgagcaccagcctCccatggtgtcgccatgcatctccgcccttgtagatctagcctccCAccgccgctctctcccttcctcggtcctcttgcccccgttccatcctatgcctgtttgtttctgctcttcaaggggcccgggcttcttccactatcacatgcccccgacactgactcccacggtaggaggagtcggcgacgggtcccatcacatttacccgttctccgatttccctttcttttccatggactccatagctctacccacaaacgcccatttggctgggtcaacggtaataccactcacctcatctttgataggattcaatgaagggctgcccggccagccaccgctttgggaagggtataggcggttgcaaagtgacctcaatgtagggtttccacagccaaacctgcaaatgctacctttagcaccggttaagctggagcccgtgaccgaggagcatcaatcaaggggcaaaagtgtcatcatcgccgacaacctcgtcgactcaaacatgggctcaaacatgctgctcggctcctccagcaatgccaaccaagatcagattcaccagctaggcagccaagatcgcatcctacaagaacatcgccgtatcgagaccaccgagaacgaagctaacgacagcatgtgtggcagcagcagcatgccccaccgtcgccgcaactcgtcagtgggcagcagccgcatgacgaggaacctcgatcccggagccggcagctcgtcgtcgcacggtggaaatggacccgttgttggtgacactgctgctgctgccaacctcggcgatggggagttcagtgaggctgacaagaagacgatcatggcgagtgagtacctctcgcagctcgtggttctatgcaataggagatctgctgcgaggtccaaggagcgcaggttgaactataagcttgagcttgaaagtaaggtgctggtgttgaagatagagattgagaagttgtctgaaaaattggcgacggctcagaggacatttaatgagcttttagctcaaaacaatgagctgaaaatcaagatacaagaaacgggtagggaacgccagatgaaagaagctatattcaaatcaataggttatgagtcacttcaagttgttgttgatggtgagttcgtcatgccaaatggtacacacgaagaaacggtcgctcggttgatcgaactgctggagccagaaacacaggctggaccatcacaaatccagggatatcagccataa
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| Protein seq | MEDDPTRRLSLLGGSSGEHQPPMVSPCISALVDLASHRRSLPSSVLLPPFHPMPVCFCSSRGPGFFHYHMPPTLTPTVGGVGDGSHHIYPFSDFPFFSMDSIALPTNAHLAGSTVIPLTSSLIGFNEGLPGQPPLWEGYRRLQSDLNVGFPQPNLQMLPLAPVKLEPVTEEHQSRGKSVIIADNLVDSNMGSNMLLGSSSNANQDQIHQLGSQDRILQEHRRIETTENEANDSMCGSSSMPHRRRNSSVGSSRMTRNLDPGAGSSSSHGGNGPVVGDTAAAANLGDGEFSEADKKTIMASEYLSQLVVLCNRRSAARSKERRLNYKLELESKVLVLKIEIEKLSEKLATAQRTFNELLAQNNELKIKIQETGRERQMKEAIFKSIGYESLQVVVDGEFVMPNGTHEETVARLIELLEPETQAGPSQIQGYQP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0520400 | RBH | 0.000000 | 0.0 | 0.317916 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g34880 | RBH | 0.000000 | 0.0 | 0.081838 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0520400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016940 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016950 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017170 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017060 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0340700 | RBH | 0.0145585 | 0 | 0.0431145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016910 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0328800 | RBH | 0.0647935 | 0 | 0.1910605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023160 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016780 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016790 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017210 | RBH | 0.077519 | 0.0 | 0.163916 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017050 | RBH | 0.0 | 0.0 | 0.0 |
