Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0016210 | OGI:09058000 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:20616884-20627608 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacgaggatctcccaacaacaaactgtacagtattgcatttggttagggtctcgttccttccatccataccacctaaacacttataaataaatatttttttctaaaaatttaatatcagtaatgatttaaaagtcaatccagaaaagttaccagaaaacttaatatcagtagtgatttaaaagtcaatccagaaaataacatacaatgagtaaacaccaaaaataactctctaaaataaagtaacgtctgggaatttaagttttggatgtgtggatgataatctatcaagctaactatcaaagacgagttatttgcatcggaaaaatgcacatcctggaaatcacagggatgtcacgggctgacagcaactttagggttccttgaatagcggaaatgaaaaaagactgaggaataggaaatacataggtgatataatacatgttcaaatctaagtattgtaaaacacagaaaaaaacacagcaataaccgtttgattggaccacagaaaaaacgtaggaatcagattagagatagattcaaaggaaaatttataagaggttagagctcttgctaaatttctttgaaaatctcctttcaaaaaattctttcaaaatctctataggattgttcattatgtaggaatttcaaaggataggatatgattttatcatttgcttcaaaacattcttaggaaatttttctatagaattaaaattctccaaaatttctatgtttttccttcgtatcaaggagccctaaccttttgtactccacattttatattctatcatttcattatgtacaagtgcaacaactaattgttatagcaatctaccaccgaattggacacaccctaccacgtgcatctatttcaaccaactcacatccacatcaattctattagcaaatggatattttcctttttagcctttctaatcgatttttgaataatggatttgagtatctaaaagtattcaactaaaaaagttaactataaaatcatagatattgtcaagagctacatttttcatataaactttatcataattcgaatttgtatgaaaaagttaagtacatatcccaaaccggcacgaatgcttaggacccgacattgatgacttttcgcaggctagcccatcccactataatcgacttgaaccgacactgatgattaaccaataagtgtcgggtattcttataaatcgatattgattgtacgtagaataatcaatattggtttgtatataacccggcgctaatgtcttcttattagtggcatgtgttacctctacttagtgtgagagtgttgggtgcagaaaaccatagttagtgttaggttttattgaaccgacactaatgatggcgacatctgtatgctatttaatagtactagtatgtttagtatgttaagttgagcatcgcgcaactataaactccctctctattaaatgtctatagattgcggtagcaataataagtttaaatttgtaataatgattaatcataacatctttaatgggtgcatagttgatggttacatcagcatatcacagacacacatacaaatatatactatatactcatcactaatatatataactttgaatgatataaagattagtcggatcatattaatctttattaaaagatgaggttatttgtaaaccgtgtgatttataaattatatgcacaacatttgtttgatctttctaaatataggtcaatgatctatttgtaatttttttcctcaaaggaaagttgtatagatagagtaagagggtatatttgcaaaatagttttttgattaaaagtgtacattataaattatatccataaccttactattttttttcttagtaggtcaggaagcttctagacaaagtgaatccatatttcagatttcttcttgctattttgtctatatgtggatccaatggctattattttattgattatatggctcatccttgttaattcttgggattcaccattcacttaatgagatttatcgatacgtggtttccatcaaatagtttgccttctgttttcagtgcatgtaaggggcatcttgaactaaggaggtaaatataaagtacaaaatctctaagggtaaacgtaaaaggccaaacctaacccctgacaaaaccatgttgatcaaattatctagtgccccgttcaaacatttgctagattcgtggtgatacgtcactcaagtaggtatatactccactaaagaatttcaaatcatgggcctgtttggcacagctccagcttcaactccacccctcctagagcaggatctcaaccaaacagttcagctccaccaaaactgagagtggagttgggtggagctctctcataaaatatactaagttatggagctgggtttaggtagccccacaactccactctaaaatcaacccttgaagttatattagaagttagagctatacaaaacaggcctataatgattgctatgcaaatcgcagccaaattatcccacaaaacaaagttaaacatgcgcctaacaagtcgacgtggggctacacgagtggggccccgggtcatcaattgcaggcatgcagtacgtagacacacacctacttgagcccaactgcaagtgcaagtgcggcgcgaagtagccggatcgcaggcaacgcgaggcccatgttgccgagtgaatcgatccagcagtagacatgcatgcatgcatccatgatgcctgcacaatgtgttactccctccgtcccataatataagggttacttgtactatttgaccactcgtcttatttaaaaatttgtgcaaatataaaaaatgaaaattgtgttttaaagtactttggataacaaagtaagtcaaaaaataaataataattctaatttcttttaaaataagacgagtggttaacaatgcaagcaaaaactcaaaatcccttatattaaggacagagggagcagttaagttgcatggcgtgggttgtggctgagtgatgggtttggccgttgctatctctctttgcacgtacGgagtctatggcggtgttgtgatttaggcatataaagtttttcGaacacgcaaaaggattgcacgtcaatatattagcaggaaaagagtttttAttacacaaagcaatcagccagactggcttatgcctaaaaaggggggacttgaagctaggaactactacgacggttaaaaaacgcaactccaaacagcgggagggggtagagccacgctacactcccaagaaatcccCaaaaaaagtaacaccggctaaagaccacagctggccctccgagcggatggactccagaaccactgcaaccgaagcgagcgcagagtcgaaaaccctaTagtttcgttccttccacagctgccaggagactaggagtaccaaggagtcgaagccgctgcggaggtgcttaggtaaacataccctggaggatgaccaccaatcctggagccagctgtcacgcccggaaattcactagtaatttCcgaacttatttgtgcataaaatcctcgtccaggaatcagccgaggtacacaaactAacaatttaatatacagactcatcaaattaactaaaacgataaatacttacttaagaggcacttagtcctcaccaaagaaaattgcagcggaaaataaaatctagcgaagctccgctccactcccacaggcagctcaactggggtataagccaaacgtcttcttcttcgcaacttgtcttcaactgagttgattgattattgcaaggtgagcatatgacatactcagcaagccacacagcaaatatgcaagtgcacaagggataccaaaggatggcataatataggctcatttgcaaaagcagcgtttagcaaaaaatttaagagaaataaaacagtagagtagttaatcagaaattttaatcaacactgaacagcacacccatgctgcacaggcccgaccatcctgaacaaccatacccggctgtacagatctaatctccaaaccaggaattatccattcTaaaccaggagctaagcaaattattaccagttattgcatcaataattatttgtgagaggtgtgagactaatcacgaaaacattgctcaactcgcccataaccgcgggcacggctattcgaatagttttactctggccagaggtgtaccactgtacccacaagacacagcctcaacatcatgtctaccatgcgtcgcgatactggaaagtacccgaatagaggctgtgacaataccctctgcataacacactcaccacagtgcaccattcctggatcGtaatcacccccttataaaacaaggcatggactccccagcgacccccgtgggcttatctccgccacttctcagtctggtgctccgcaatgaaccatgctatacaaaaggtaaagccgttgcccacgctggcttgtggttggcacggttaatgtttcacaacagtagctcgcgaaccggtccttaattgtcatgagcacgactctcaaaaccatgtgctcactacccacattatcaagttttagttggcaagtaattaattaaccaatcacgattgaccatcgtgaactatcattaagccatcattaaataatagtgaatcataaattatcccaatagtgtgctaatgtttctaagcatggctaagcaatcacatctaatatctagctgaaccaatatatatagctcaactagtcaagttataataacccaaggtatcaaggaataaagtaatcaatgcaaacaggccataacaaaggaataggttcacaccacccagtgacattcgaaaataaatgcacagttgaaataaatagagaatttaaatataggatcagcatgctcaaaggaattgtgtttaggatctgtgtgacttgccttgcaataatcggtcttcaattaatcttcttgaacacttccgacgcactcgcgaaccttcgcaacgacggaaacgacaagctaacacgcaaaacgaggaaaaagactaataaaaaccaaataaacagtacatAaaaaaagtaaacaaacatgtagatcataattttagatgaattatgagacttgaacggcctcattctgacttcaaatgaatttaatatgaattttacaagattaaatctatttaaagcccatttaaaaagaattaaataaattaattcaatttatggacaattttaatatgtagatctttattttacacaacttttgcaacttgaaccacattaaactgagttcaaatgaattagttatgaatttttaaagattaaatcggattaaaacctttatattgattttaattgaattatgacgcaataatgaattatttttgaaaaggaaaaggaggattattgcgtcagcggctagggtttgcggtggaccggtgcacggcagcggttcacggaaacgaacggccgagatcatccctatccaaaacggacggccgagatcatccggtccacgaccgactcacgggagagggcgacgatgacgtcagcgacgacgtcacctccggcggcggctcggcgctcggtggctcgggcgcgcatgctcgccggcgaacgacggcgcggcggcgcgaacggagggcaccaggacgatgcgggcatcgcggcgaactcaccggtgaccaaagatgcggcggaggaacaacggacggcgccggcgacgaggaagaagcggcggcggagatcgggtcgacgacggcgacgacgctccggcggtcttcggtggcggcgaagcggtggacggggacggcgacgaccttgcgaacccgatggtggccttcccgagcgacggcgacgactggagcaacggcgaaggacgactggagcgacggcggcgacggcggcacgaagcggcacggcgctagggcgctacggacgacgagaggcgaaggcgaaggtggcgacgggtagcggagacaccggggtgcttttaaaggggcaaggaggcggcggcgaaggcccacggcgacggagacggcgaaggaaagctagggttcggaggagagagatcgatccgaatcgaactcgaatccacggatttccaaaccgaattagccgttgattccaaaagagaaaaggaagaggagatcgagaagattgtttcccctcaaacgattcggccggagatggaaagacgcggccgaatttggaaggagacggcggcgcagctcggctagggttcggccgggcgacggctggaggaggacgaaggtccgacagacgggccccacctgtcagcgacaacgagagagagagagagagcgcggcggctcggcggactgggccgaggagagagaggaagagaggttttgggccggctttcggcccaaagccaaaagaagacttttaaaacctttttcaatttaaattatttcttaaatgcaattccatttattaaaaatacttccttagctcaaataaatcccaaaaaatctaggaattatagaattagaaaagtatttaacaaaaaatacaaattttttatcagcccaattttatgttgagatttaacaaattaaaattagatcttctctttaagcttttaaaatcatttctaataatccttttaaacaacaatttataatttaaggattttaaacaagaaaagcacttaacaattataattagatcattaatgatcaaataattactgaactgttctttgtatcatttaggaattgagctctgaaaaatctgagaaaatttcagagagttgacttaatcatggagaattaataaaaattaaatccatccatgctttatatttaggaaatttttatttcccacatttaacttcacttgtaaattaaagatcatttaatttaaattctattaataatttattaaatagtttataaatcctgaaacaaaaatcaggatgtgacaccagctaccatgagggggagagagggagcccagcaggaggggacaacacacggagccagacctgccgagcgaacacgcaatcgatgaggatgtggttcactgtctcaagctcctgagcacaaaaggggcaagcagagtggctatcgataccacgcttttggagaagatcggcagtccagcagcgctgctgaaaatgcaaaccaaaggaagaacttgcatttagcagggcccttcgcgtgccaaagtaagtcggcacaggcaaaagagtgctggccaaggaagaacgcctgatacgctgatcgcgctgagtagcactggtcacccgtccaacgccagacgaggtgatcctcaacacccggcgagagctgggtaggaagcaccgcgtccaaactaacaggaactgagagatgaccgggacagtgagggcgccacgtatgtcaccaacccaggagtgttcgctaacccagcagcaactgtgcgcgatccccggaaacgtggaggcacggcgtggaggaggtcaggagctatagaagctatcgagcgaccatcgatccaccgatTagtcTagaagagcgtggactgaccatctcctaggatagagaaggtggaagctgcgaatatgtcggagacgctccgctcaacaggggccttcagatcagaccagtaggggtgtcccgagtgctgaagccagagccagcgaactctcaaggcaaagcccagccaccttgagatccggaatgcccagtccaccgagatccctaggacgacaaaccctcgtccaggacacccggcactgtcccccattggccgagtccgtacccgtccacaagaaggcgcgacgcttcttgtcaatggctttgataacccagcttggcaagccgatcgccatagaaacatggaccggaatggaagagagaacgactagactagaaccgagcgacccgccagagtggttagacggcccttccaggggggagccgatgggacacttatccacaagcggttgcagggccgcttttggcagcttgcgaactgacagtggaatgccgaggtaggtgcaggggaactctgagattgagcaaggaaaagaggactgaaccagctccaggtcaagaaccgagcagcggatcagagtaatcaagcacttggtgaagttggtccgaagcccggaagcggcaccgaagacagagaggatgccttggatgaactcaaggtcttgccgaacgggggaaaggaagagaactggatcatcggcgtagagggatgcacgatgtcgaatagcacgatcattgaggggagaaaactacccgagtcagaggctttgcagagcatcgcattgagcacatccatgactagaatgaaaagcatggggaaagaggatctccttggcgaagacctctcgatgggggaaacgtggacttggcaccccattaaccagcaccgggaagaggaggcactgagaatgagggagatccaatcacgccaatgttgactgaagccaagctgggctagcacctcaagcaagaaaggccagctgaccgtgtcaaaggccttcacgatatccaccttgagaagaagtcggggaacgcgtttggcgtggagcgcccttgccgcaagctggacatagcggaagttgtcatggagagagcggcccttgatgaaagcattctggttaggcgccacaagctcgtccaggcgaggggagagaggacgagaggccaagatcttggagaacagcttcccaaagctgtgaataaggctaatcggcgtgaaatccttaaacgtcaacagcctcgtccttcttcggcaagagggagattagggcgtcgttgagggaagcaaaaccttggccgttggtcaggaacaaggagttaagggccgcagaatttcgaccttgatcaccggccagcaagacttgtagaaacggcccgtaaaaccgtcaggaccgggcgccttatcagagggcaaggacttgatcaccgcccagacctcatcctctgtgaagggatagtccagcccctcaagctgcgcaaggcggaggccaagagagtggaggtctagggcgagttcacgctcaacgctcgtccccaagatggcgcaaaagtgagaggaggcaagctcttgcagcgcattatgggagatggcaagctggtcaccatcacgaaggcgcgtgatgaagttctttcgcctacgagctctggtgtgcatgtggaagaacttggtattggcgtcaccctccttaagccagaccaaacgcgaacactgacgcgatagtacgctcaagcgaggcaagaccaagacacttcaactttaaatctcgccgcagctaggtctccaaggggaaagagaccgactctcctgcgcaacatcaagccggaagacaagttccttcgccatctgaagctgcagacgaacactgccaatgtgacggtcactccagctctgtaagcgcttggctgtggtagagaagcaccaggcaagagcggcaaagggggtaggttggcagggggatgccaggcgtcctgcatgacttgaagaaagccgtcgaacttgggccaaaaggcctcaaaacgaaaacgatgcgctttcggggaggtgacgcaggtatgaaggagaagagcacagtgatcagaggcgatagaagaagccgcttggaggaggcaagaggggaaaagctcctcccaatccgcagagaagaggacgcggtcgagcttaacaagcgtgggcgactcgcgctcattgctccaagtgaagcgacgtccgtgaagcggcagctcccggagttccaactcgtcgacgagccgacgaaaacgacccatcatacgacgattgagattaaggttgtttttatcccgagcttcgagaatgaggttgaaatcgcctacgacggcccacggccccgtgcgagaggagcgcagcgaacgaagctcatctaagaaacgaagcttgtcaggctcctcctgtggcccatagacgatggagagccaccagggggcgacatcagaagagtgtcgaaccaacgcggtaagagagaaatctgcaaggtgaacatctgagacagaccagacggtcgtccgccaggcaagcaacaccccccactccgaccaactgcaggcaagaaggaataatcaaagtcgaggcctagcatttccagaatagtacgagaggggattacatccataatagtctcctgaagacagagaagagagacatgctcatcacggactacatcacgcacagcatcccggcggtgcacgagttcagacctcgcacgttccacaccaaaacgttctcgttgcatgatccTattgtgggggaccacacCgagagcagaagagaagaaaccgatcagccgcacacgaccaacgcctctgcagccttggccgggggcaaggagctggagaagagcgaggagagcgcgatgatgtgctcctgggaaagtggcttggagaagagggcgttgtaagccgccgaccgcctcggccgtgaccgggcccctcttcggaactaggccgagcttccgcatcaggttgcgTtgggcgtgcgacactgcatggatcggcccctcaagcgcctcaagtgccatcttagcagcgatacgctcactgcgcttcggcacaacctccaccaccttggcggTgagaggcggcagcggcaaaggcggcgggaggagcgcaggagggagaggcctagagcagctggtgaggaaggcgcgaagagcggCgttgtctgccacagaagatggaagcgagtgcgccagcgggcggccatcgaggtcaaggacaaccatcggcacatcgtagaggacgccgtcagggcccat
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| CDS seq | atgggccctgacggcgtcctctacgatgtgccgatggttgtccttgacctcgatggccgcccgctggcgcactcgcttccatcttctgtggcagacaacGccgctcttcgcgccttcctcaccagctgctctaggcctctccctcctgcgctcctcccgccgcctttgccgctgccgcctctcAccgccaaggtggtggaggttgtgccgaagcgcagtgagcgtatcgctgctaagatggcacttgaggcgcttgaggggccgatccatgcagtgtcgcacgcccaAcgcaacctgatgcggaagctcggcctagttccgaagaggggcccggtcacggccgaggcggtcggcggcttacaacgccctcttctccaagccactttcccaggagcacatcatcgcgctctcctcgctcttctccagctccttgcccccggccaaggctgcagaggcgttggtcgtggtatggatggaaggaacgagaccctaaccaaatgcaatactgtacagtttgttgttgggagatcctcgtga
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| Protein seq | MGPDGVLYDVPMVVLDLDGRPLAHSLPSSVADNAALRAFLTSCSRPLPPALLPPPLPLPPLTAKVVEVVPKRSERIAAKMALEALEGPIHAVSHAQRNLMRKLGLVPKRGPVTAEAVGGLQRPLLQATFPGAHHRALLALLQLLAPGQGCRGVGRGMDGRNETLTKCNTVQFVVGRSS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0016210 | OsLima_09g0016210.01 | Chr09 | 20616884 | 20627608 | - | NAM | ||
| CDS seq | atgggccctgacggcgtcctctacgatgtgccgatggttgtccttgacctcgatggccgcccgctggcgcactcgcttccatcttctgtggcagacaacGccgctcttcgcgccttcctcaccagctgctctaggcctctccctcctgcgctcctcccgccgcctttgccgctgccgcctctcAccgccaaggtggtggaggttgtgccgaagcgcagtgagcgtatcgctgctaagatggcacttgaggcgcttgaggggccgatccatgcagtgtcgcacgcccaAcgcaacctgatgcggaagctcggcctagttccgaagaggggcccggtcacggccgaggcggtcggcggcttacaacgccctcttctccaagccactttcccaggagcacatcatcgcgctctcctcgctcttctccagctccttgcccccggccaaggctgcagaggcgttggtcgtggtatggatggaaggaacgagaccctaaccaaatgcaatactgtacagtttgttgttgggagatcctcgtga
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| Protein seq | MGPDGVLYDVPMVVLDLDGRPLAHSLPSSVADNAALRAFLTSCSRPLPPALLPPPLPLPPLTAKVVEVVPKRSERIAAKMALEALEGPIHAVSHAQRNLMRKLGLVPKRGPVTAEAVGGLQRPLLQATFPGAHHRALLALLQLLAPGQGCRGVGRGMDGRNETLTKCNTVQFVVGRSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016230 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016230 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016470 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016220 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016350 | SBH | 20.912821 | 26.691862 | 40.043266 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016220 | SBH | 0.686456 | 0.639699 | 2.984302 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0007020 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016030 | SBH | 2.094597 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016140 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015970 | SBH | 0.978366 | 0.0 | 2.851710 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016100 | SBH | 0.530587 | 3.725367 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016520 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016320 | SBH | 0.0 | 0.0 | 0.0 |
