Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0016120 | OGI:09057840 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:20527088-20529518 | ||||||||
| Gene Symbol | OsbHLH082, OsbHLH081, bHLH081, OsBC1, BC1 | ||||||||||
| DNA seq | gacgaaaaagttgcaaagattcagagattgttgcatcgcccttgagacagcagcaaattcagtgaccctttcatatgaacaaatggttgcttgtttttgtctaagtagagtacaatggcaatgacaaagaagagactactacttctaattaaattgatcctagctctagtacaactctttaattactgcatgcatgccaccagacaaggggatggactcgatccaacatctcaaactcatctggtgcttccacaaaccatcgaatcatattattattccctcctgctggacacacacaaacaagaacatattagaattgataaaaacaaaaaaagaactactactaatcttgaacttgaaactcaagattgtcatatgcagttggagttgtctggactgaaacatcgtaactaggtggttgtatcttctttgaagcaaaggccggattgttatccgttttctaaataatatgcagtctcgtgaaatttgagtatcccaacattgtatttcacatggcattgattttgtcataatgatgttagattacacaaacctgagcaattttggaactcaagctgcagtcttatgaaatttgagtatctaagtgtgtatcttacatggtactactatttttttttcataatgatgttagattacacaatcctgaactgaagatagcaaaaggacttccacttaacgttttgctacattacctattgtcaatgtagggtcccttctcctagccttttgtctctcaccctctcctccctactggaaagagcacatgtaattattgagcaccacttgattgaacagttcttgccttggctcccctactgtttgcatgatgtagctgccattgtcctgaaaaagttaagtatgcagcctcagctatgaacagtgatttggaattgagaacctgaatggatcatatctcatagggaagaaatgaacagagggccaaagaaacaaaccaacctgggagagagagttgttgttgctgcctccctggacttgaagtgtgtagggtgtaggagaggtgttCgatgtgtccatgatggcatgagattgagctgggctactacctctgttcaggacagaagctggtattgcaactgcctcatggaacattccttccatcttctgatgaaagagaaaagagtcacactgattaaattgtgagcacattaacatgaaaaattatgtagttaatagtactccagaacatttgtttgagttgtttctgacctgagagtggtcactgaaagcatcactgtctatgccaaacccatacagcacagggctcagagatgcaatcctcatggaaaggaactgtgtcacaatcagaggtagaatatgttatagctaagcaaaaactcttgtacctttaatttttttttgtattctagtcatgttaattacctcaacttggttctgtaaggactgcacatagttgatgatctcatccaaaatgagagcctttccagtgacctacacagataaatgattttttttcactttcaaagatagtatcaaacatattaacatatacaaaaaaaaattgtcactgcaaataccactagtttagttagtagttaactagtgatctaaccttgtcacaaccagggaccagagcctgcagcatcctcatcctctcactgatcctttctctcctcacctgaagaaaatgccagagcagatagcaaaaaatgagtcccaaacaaccaaagctaatagctgcacaaaccacaagcaaaagatcaaagttgaggaagaaatttaccctctctgcaaggctgtggctatctgttgcttgccctctccttgccctgacatggatgaacccctgaggtgcctcctcctccatctgatccctgctgtgtttcttccctcccctcttcctgccattctcctttgcctcctgattgttcaacacaacatcatatgatgaaacaaagaaacatgagccaagaaattcatcttggaaagttatctgaagctgtattcttgaaaggaaaaaacaaagagattcagaaactgttttttcactgtcatgctcatgtgcttttctaccttggagtgagcagagttgaggctggcagtgtcttcttccctgggcttcctcttcttgtcctgtggagaggtgtcaagaaccacagatgaggtctccattgaggcatcttcagggatggctggagctgtggtggttgctgctcctccatggctgccatggcagaagaggaagccattgttggtgatgaggccatgctccatctgctgtgggaggtgtgagaagcctgccattgccaatgctcttggtgtcctagatgctactacctagctagagctagagatacctatatggtggtggagttgcttcttgttcttggtgtctgaactgaaagatgaagctctctagattgcaacaagt
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| CDS seq | atggcaggcttctcacacctcccacagcagatggagcatggcctcatcaccaacaatggcttcctcttctgccatggcagccatggaggagcagcaaccaccacagctccagccatccctgaagatgcctcaatggagacctcatctgtggttcttgacacctctccacaggacaagaagaggaagcccagggaagaagacactgccagcctcaactctgctcactccaaggaggcaaaggagaatggcaggaagaggggagggaagaaacacagcagggatcagatggaggaggaggcacctcaggggttcatccatgtcagggcaaggagagggcaagcaacagatagccacagccttgcagagagggtgaggagagaaaggatcagtgagaggatgaggatgctgcaggctctggtccctggttgtgacaaggtcactggaaaggctctcattttggatgagatcatcaactatgtgcagtccttacagaaccaagttgagttcctttccatgaggattgcatctctgagccctgtgctgtatgggtttggcatagacagtgatgctttcagtgaccactctcagaagatggaaggaatgttccatgaggcagttgcaataccagcttctgtcctgaacagaggtagtagcccagctcaatctcatgccatcatggacacatcGaacacctctcctacaccctacacacttcaagtccagggaggcagcaacaacaactctctctcccaggacaatggcagctacatcatgcaaacagtaggggagccaaggcaagaactgttcaatcaagtggtgctcaataattacatgtgctctttccagtag
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| Protein seq | MAGFSHLPQQMEHGLITNNGFLFCHGSHGGAATTTAPAIPEDASMETSSVVLDTSPQDKKRKPREEDTASLNSAHSKEAKENGRKRGGKKHSRDQMEEEAPQGFIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASLSPVLYGFGIDSDAFSDHSQKMEGMFHEAVAIPASVLNRGSSPAQSHAIMDTSNTSPTPYTLQVQGGSNNNSLSQDNGSYIMQTVGEPRQELFNQVVLNNYMCSFQ |
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| Function | Transcription factor bHLH137 [UniProtKB/Swiss-Prot:Q93W88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0016120 | OsLima_09g0016120.01 | Chr09 | 20527088 | 20529518 | - | NAM | ||
| CDS seq | atggcaggcttctcacacctcccacagcagatggagcatggcctcatcaccaacaatggcttcctcttctgccatggcagccatggaggagcagcaaccaccacagctccagccatccctgaagatgcctcaatggagacctcatctgtggttcttgacacctctccacaggacaagaagaggaagcccagggaagaagacactgccagcctcaactctgctcactccaaggaggcaaaggagaatggcaggaagaggggagggaagaaacacagcagggatcagatggaggaggaggcacctcaggggttcatccatgtcagggcaaggagagggcaagcaacagatagccacagccttgcagagagggtgaggagagaaaggatcagtgagaggatgaggatgctgcaggctctggtccctggttgtgacaaggtcactggaaaggctctcattttggatgagatcatcaactatgtgcagtccttacagaaccaagttgagttcctttccatgaggattgcatctctgagccctgtgctgtatgggtttggcatagacagtgatgctttcagtgaccactctcagaagatggaaggaatgttccatgaggcagttgcaataccagcttctgtcctgaacagaggtagtagcccagctcaatctcatgccatcatggacacatcGaacacctctcctacaccctacacacttcaagtccagggaggcagcaacaacaactctctctcccaggacaatggcagctacatcatgcaaacagtaggggagccaaggcaagaactgttcaatcaagtggtgctcaataattacatgtgctctttccagtag
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| Protein seq | MAGFSHLPQQMEHGLITNNGFLFCHGSHGGAATTTAPAIPEDASMETSSVVLDTSPQDKKRKPREEDTASLNSAHSKEAKENGRKRGGKKHSRDQMEEEAPQGFIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASLSPVLYGFGIDSDAFSDHSQKMEGMFHEAVAIPASVLNRGSSPAQSHAIMDTSNTSPTPYTLQVQGGSNNNSLSQDNGSYIMQTVGEPRQELFNQVVLNNYMCSFQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0510500 | RBH | 0.0 | 0.0 | 1.649175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g33580 | RBH | 0.0 | 0.0 | 0.420431 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0510500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016150 | RBH | 0.0 | 0.0 | 3.428776 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016150 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016380 | RBH | 0.0 | 0.000000 | 3.061783 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016140 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016270 | RBH | 0.0 | 0.0 | 6.473162 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0331500 | RBH | 2.5729515 | 0.264456 | 14.491683 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016140 | RBH | 0.0 | 0.0 | 0.264787 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0320600 | RBH | 3.533907 | 0.147575 | 23.8265515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0022600 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0015950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015890 | RBH | 0.0 | 0.0 | 0.396094 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016020 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016430 | RBH | 0.0 | 0.0 | 1.120185 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016230 | RBH | 0.0 | 2.720615 | 5.612922 |
