Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0015510 | OGI:09056690 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:20117389-20119538 | ||||||||
| Gene Symbol | OsbHLH092 | ||||||||||
| DNA seq | tgacatgttgaaatagcacataccttttcatttcaagacaaaatcaacagtacactgtatcatggcaataccaggctattaccagccggctcgtacatactggaagagagatggtgcttgtaatatttgcaccatatctagtacataacctactattttgtagatcatatttgtctcacaaatatgagaagaatcaagtagccgtacatccagcatatgaaaaatgaatcagttccctcgggcctaaatttcgaagaacagttagcttaggagcttcactttgcaactggtttcatgctttctatgtacaaaaatcattggctgttatcactgatcatctagaactcgatctctgtgtgatctgctgcttgcaactgacctgtgtcaattgatccatacaggctatcagtctatcatactgaacaaggcatgcaatacaagtgaacataatcaattacacgaaccatcgaaattcggtgcagaaaccgcatcctcctggctttgttcgtcgttatactggaaagtattatcctcccagagatccctttgctgaaaagaaaaccaaaggcaaacagtgttatcatcatatatgcatgttaataccatctgttccgtagattgcaagttttttaaggcagcaatcacctgcttctgaaaagcatactgtgtgctccctgtgtggggtagagctgtgtttgccagatctaggctacattggttttccatggctcccagaccaaatgactggaaaaaatctgcttggtcacaaaatggaaaagctgtaccggcactttccaaaggaaatacggaattcaccgaagggccacaagattggaacatctggattttacaaagaaaaattgcgtgttaggagcatattgctaatggacccgaagcacgcaaattgggataactcaaagctcacatctttctgtaagagtgtagataggttgccaaagtcgagctgcggattcacggtcgcgagcttcatggacaggaactgaaatggtaccaaattgttactatcagagttttcataatctgaccaagcaacataaccaaatgttttggctgtgtcctaacctcgacctgctgctgcaacgattgcacgtagtttatgatctcatcaagcatgagtgccttgccaaccacctaaaacaaggataatctcttcaaattagccaacacatagggtaccaactgaaacttcggcgcgacagtttatcgttcaggaatctgatgataccttgttgcatccaggcaccaggtcctgaagcactttcatccgctggctaatcttctctcttctaacctatcaaaccacaaagcacagtgtgtgaatttccactcaacccccaaatttgacatgaatttgtacagatttcagtgtgctttgttaccctctctgcaaggctgtggctgtcagtggcctgacctcgccgtgcccggacatggacgtagtccttgggcggctcggcggccggcttggatgagttcttcccctttccttgcttctgcactctgtctcccaccgagccatcgctggcggcttcttccaccttgggattcacctccgctttgcatttcttggagtccggcgccttcgcctctccaacctgcaaacccaaagaagaaatggagcgggacatgttcagcatcaagatcagtcactccatggtggaattcgctgtagctgagctcgacccacctcgcacgggctgctgccgccgcccacgacggcgtccttgtccttcccggcggcggcgctcgccggagctttcctcttcctggcattgtcgccgccgccaccggtggcgtgcgcccacgcagggtcggacaccgacgagccttccctcgagcagccgccgcgctcggcgttccccaccgcaggcagcccgaacagcccagctccgccgccgcacaacctcgccgcccgctccgcgaagccgggcccgccgcacagcgtctccaagaaagcgccaccgccgccgtcgagcacaccgaggtcgagccccgcggcggcggcgctcatgagaatgccggcaacgtagtcgctgtccatcgatcaagaaaccaaaagaagaagaaaaaaaaacacaaacccgcaagaattgcgcgagaagcgaggagtggaattgggagagaggagc
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| CDS seq | atggacagcgactacgttgccggcattctcatgagcgccgccgccgcggggctcgacctcggtgtgctcgacggcggcggtggcgctttcttggagacgctgtgcggcgggcccggcttcgcggagcgggcggcgaggttgtgcggcggcggagctgggctgttcgggctgcctgcggtggggaacgccgagcgcggcggctgctcgagggaaggctcgtcggtgtccgaccctgcgtgggcgcacgccaccggtggcggcggcgacaatgccaggaagaggaaagctccggcgagcgccgccgccgggaaggacaaggacgccgtcgtgggcggcggcagcagcccgtgcgaggttggagaggcgaaggcgccggactccaagaaatgcaaagcggaggtgaatcccaaggtggaagaagccgccagcgatggctcggtgggagacagagtgcagaagcaaggaaaggggaagaactcatccaagccggccgccgagccgcccaaggactacgtccatgtccgggcacggcgaggtcaggccactgacagccacagccttgcagagagggttagaagagagaagattagccagcggatgaaagtgcttcaggacctggtgcctggatgcaacaaggtggttggcaaggcactcatgcttgatgagatcataaactacgtgcaatcgttgcagcagcaggtcgagttcctgtccatgaagctcgcgaccgtgaatccgcagctcgactttggcaacctatctacactcttacagaaagatatgttccaatcttgtggcccttcggtgaattccgtatttcctttggaaagtgccggtacagcttttccattttgtgaccaagcagattttttccagtcatttggtctgggagccatggaaaaccaatgtagcctagatctggcaaacacagctctaccccacacagggagcacacagtatgcttttcagaagcaggtgattgctgccttaaaaaacttgcaatctacggaacagatggtattaacatgcatatatgatgataacactgtttgcctttggttttcttttcagcaaagggatctctgggaggataatactttccagtataacgacgaacaaagccaggaggatgcggtttctgcaccgaatttcgatggttcgtgtaattga
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| Protein seq | MDSDYVAGILMSAAAAGLDLGVLDGGGGAFLETLCGGPGFAERAARLCGGGAGLFGLPAVGNAERGGCSREGSSVSDPAWAHATGGGGDNARKRKAPASAAAGKDKDAVVGGGSSPCEVGEAKAPDSKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLGAMENQCSLDLANTALPHTGSTQYAFQKQVIAALKNLQSTEQMVLTCIYDDNTVCLWFSFQQRDLWEDNTFQYNDEQSQEDAVSAPNFDGSCN |
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| Function | Transcription factor bHLH62 [UniProtKB/Swiss-Prot:Q9SRT2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0015510 | OsLima_09g0015510.02 | Chr09 | 20117389 | 20119538 | - | NAM | ||
| CDS seq | atgctgaacatgtcccgctccatttcttctttgggtttgcaggttggagaggcgaaggcgccggactccaagaaatgcaaagcggaggtgaatcccaaggtggaagaagccgccagcgatggctcggtgggagacagagtgcagaagcaaggaaaggggaagaactcatccaagccggccgccgagccgcccaaggactacgtccatgtccgggcacggcgaggtcaggccactgacagccacagccttgcagagagggttagaagagagaagattagccagcggatgaaagtgcttcaggacctggtgcctggatgcaacaaggtggttggcaaggcactcatgcttgatgagatcataaactacgtgcaatcgttgcagcagcaggtcgagttcctgtccatgaagctcgcgaccgtgaatccgcagctcgactttggcaacctatctacactcttacagaaagatatgttccaatcttgtggcccttcggtgaattccgtatttcctttggaaagtgccggtacagcttttccattttgtgaccaagcagattttttccagtcatttggtctgggagccatggaaaaccaatgtagcctagatctggcaaacacagctctaccccacacagggagcacacagtatgcttttcagaagcagcaaagggatctctgggaggataatactttccagtataacgacgaacaaagccaggaggatgcggtttctgcaccgaatttcgatggtcagttgcaagcagcagatcacacagagatcgagttctag
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| Protein seq | MLNMSRSISSLGLQVGEAKAPDSKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLGAMENQCSLDLANTALPHTGSTQYAFQKQQRDLWEDNTFQYNDEQSQEDAVSAPNFDGQLQAADHTEIEF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0015510 | OsLima_09g0015510.03 | Chr09 | 20117398 | 20119538 | - | NAM | ||
| CDS seq | atggacagcgactacgttgccggcattctcatgagcgccgccgccgcggggctcgacctcggtgtgctcgacggcggcggtggcgctttcttggagacgctgtgcggcgggcccggcttcgcggagcgggcggcgaggttgtgcggcggcggagctgggctgttcgggctgcctgcggtggggaacgccgagcgcggcggctgctcgagggaaggctcgtcggtgtccgaccctgcgtgggcgcacgccaccggtggcggcggcgacaatgccaggaagaggaaagctccggcgagcgccgccgccgggaaggacaaggacgccgtcgtgggcggcggcagcagcccgtgcgaggttggagaggcgaaggcgccggactccaagaaatgcaaagcggaggtgaatcccaaggtggaagaagccgccagcgatggctcggtgggagacagagtgcagaagcaaggaaaggggaagaactcatccaagccggccgccgagccgcccaaggactacgtccatgtccgggcacggcgaggtcaggccactgacagccacagccttgcagagagggttagaagagagaagattagccagcggatgaaagtgcttcaggacctggtgcctggatgcaacaaggtggttggcaaggcactcatgcttgatgagatcataaactacgtgcaatcgttgcagcagcaggtcgagttcctgtccatgaagctcgcgaccgtgaatccgcagctcgactttggcaacctatctacactcttacagaaagatatgttccaatcttgtggcccttcggtgaattccgtatttcctttggaaagtgccggtacagcttttccattttgtgaccaagcagattttttccagtcatttggtctgggagccatggaaaaccaatgtagcctagatctggcaaacacagctctaccccacacagggagcacacagtatgcttttcagaagcaggtgattgctgccttaaaaaacttgcaatctacggaacagatggtattaacatgcatatatgatgataacactgtttgcctttggttttcttttcagcaaagggatctctgggaggataatactttccagtataacgacgaacaaagccaggaggatgcggtttctgcaccgaatttcgatggttcgtgtaattga
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| Protein seq | MDSDYVAGILMSAAAAGLDLGVLDGGGGAFLETLCGGPGFAERAARLCGGGAGLFGLPAVGNAERGGCSREGSSVSDPAWAHATGGGGDNARKRKAPASAAAGKDKDAVVGGGSSPCEVGEAKAPDSKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLGAMENQCSLDLANTALPHTGSTQYAFQKQVIAALKNLQSTEQMVLTCIYDDNTVCLWFSFQQRDLWEDNTFQYNDEQSQEDAVSAPNFDGSCN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0015510 | OsLima_09g0015510.01 | Chr09 | 20117389 | 20119538 | - | NAM | ||
| CDS seq | atggacagcgactacgttgccggcattctcatgagcgccgccgccgcggggctcgacctcggtgtgctcgacggcggcggtggcgctttcttggagacgctgtgcggcgggcccggcttcgcggagcgggcggcgaggttgtgcggcggcggagctgggctgttcgggctgcctgcggtggggaacgccgagcgcggcggctgctcgagggaaggctcgtcggtgtccgaccctgcgtgggcgcacgccaccggtggcggcggcgacaatgccaggaagaggaaagctccggcgagcgccgccgccgggaaggacaaggacgccgtcgtgggcggcggcagcagcccgtgcgaggttggagaggcgaaggcgccggactccaagaaatgcaaagcggaggtgaatcccaaggtggaagaagccgccagcgatggctcggtgggagacagagtgcagaagcaaggaaaggggaagaactcatccaagccggccgccgagccgcccaaggactacgtccatgtccgggcacggcgaggtcaggccactgacagccacagccttgcagagagggttagaagagagaagattagccagcggatgaaagtgcttcaggacctggtgcctggatgcaacaaggtggttggcaaggcactcatgcttgatgagatcataaactacgtgcaatcgttgcagcagcaggtcgagttcctgtccatgaagctcgcgaccgtgaatccgcagctcgactttggcaacctatctacactcttacagaaagatatgttccaatcttgtggcccttcggtgaattccgtatttcctttggaaagtgccggtacagcttttccattttgtgaccaagcagattttttccagtcatttggtctgggagccatggaaaaccaatgtagcctagatctggcaaacacagctctaccccacacagggagcacacagtatgcttttcagaagcagcaaagggatctctgggaggataatactttccagtataacgacgaacaaagccaggaggatgcggtttctgcaccgaatttcgatggtcagttgcaagcagcagatcacacagagatcgagttctag
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| Protein seq | MDSDYVAGILMSAAAAGLDLGVLDGGGGAFLETLCGGPGFAERAARLCGGGAGLFGLPAVGNAERGGCSREGSSVSDPAWAHATGGGGDNARKRKAPASAAAGKDKDAVVGGGSSPCEVGEAKAPDSKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLGAMENQCSLDLANTALPHTGSTQYAFQKQQRDLWEDNTFQYNDEQSQEDAVSAPNFDGQLQAADHTEIEF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr09 | 20118789 | 20119538 | - | OsLima_09g0015510.02 | OsLima_09g0015510.02,OsLima_09g0015510.01,OsLima_09g0015510.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.084766 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0501600 | RBH | 1.254252 | 2.491830 | 24.789244 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32510 | RBH | 0.789747 | 1.867379 | 6.557928 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0501600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015530 | RBH | 0.114616 | 11.149510 | 10.593521 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015540 | RBH | 0.075588 | 2.539048 | 7.429002 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015760 | RBH | 0.483798 | 12.975106 | 14.287652 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015550 | RBH | 0.000000 | 0.228459 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015690 | RBH | 0.0 | 19.850248 | 16.691908 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0324800 | RBH | 17.576281 | 27.133538 | 3.7348585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015530 | RBH | 0.221549 | 0.741025 | 1.176498 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0314400 | RBH | 25.040327 | 15.84929 | 7.379106 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021750 | RBH | 0.000000 | 0.270405 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0015380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0015440 | RBH | 0.0 | 21.347694 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015300 | RBH | 2.357966 | 0.0 | 4.075576 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0015420 | RBH | 0.582370 | 9.582075 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015820 | RBH | 0.0 | 4.705503 | 4.384427 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015620 | RBH | 0.639264 | 20.220877 | 13.806589 |
