Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0015030 | OGI:09055940 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:19765471-19772096 | ||||||||
| Gene Symbol | CCR35, OsCCR35 | ||||||||||
| DNA seq | tcaattgtcagcagacaacctgaagagatggggaagtcggcaaggatgcccatccaaaatcttcagaatgcctgcattttcgtagcaatcgacgctgtccgagagcgtctcctccagcctccttggcgcccagcccaggctcatcagcttctgcgatgtcaatgacgctttatgctccacatcagggatgctgtagaagcaaattaaagatttgttcaagccatgcaaatactgaagacacaatgaggattattccatgtggttctaagtcttgagtcttgacagaaactggtatgagggaaatttaacctacttatttagggtgtgtttagttcacgctaaaattgaaactttggttgaaattggaatgatgtgatggaaaagttgaaagtttgtgtgtagaaaaattttgatgtgatgaaaaagttaaaagtttgaagaaatagtttggaactaaactcggcctcggatagttgtactttgggtacatcttcttcagcaagttcaccaaatcccttgtgcagatgtgatctgatgagcaaatgtatctcccagatgattctggtttttcgtacagcaaatgtaaggcatcggccacatcacggacatcgactatgtgccacagtttgttgttcatcacatcagggcctcctggaatccaattaacagggtcaaaactacagtgaaacaaaataattttgccaagtattagtaactagcaatattcgtggttgcaacagtaacaagacaactgtaaggtttctttcagtactgcgtactcattttcctaaagatttagtggcacattgaatgttggttgtaatctgacagtgccaccacaatcacattcaggcgtgaaatatctacaataatgagccaagtgtaggaatcacatgcaatagattgcatagaatctatgcatcgggatgagtcaagtgtagcaccatgaatgaagtaaacaaattgtcagaactagtaggctaatagcaatgtagcatgatggcttgcacaatggcaagaacatgacaagacaattatcacttcttacatttacagcactacacaaaacatttttaaaaactttcagtgacacgtaagagtgcttttctttcacgattcatcagttttagcacagaattcgctgtacactgcttcttgttgttgttgttgttggttttttttttAaaaaaaaaaccgagccagcaaacgctggtgctatattaagtagagctgtacactgctttgtccattgccattcaatattaagcgtgtaatatcaagttatgaacattaatgagctaagtggggaatcacatgcaatagatgaataagtagattgtagagaatctgcctcaggatgattattcccatcttgcaactatacactgtagagcatctgaaaaaggtcaagcagctatatctgaagaatacaaggataaacatggggcaggcaaagaaataagtgatcactcacaagacagattctagataatggccataccacattatttggattttttttcttgattgagttgtaataaagtgcatctaagtatctaaccacaggaaataactaagcaatcacatgtaaagcattgggctggaccaaataaatgcatttcaacactagtaacagggtttgcattaacacaagttgactaattgttagggagcataactaacttgcattgtcagggtattcatcagaaaagcaacaattcaggcaataaacgagaagaaataaatggaggagtcaccaacaagggacctttcatcacatagatgaggaatttgctgctgatattcaccgtaggctgcaacatcggaccaaaaaccaacggagggcagagtgttacaacattcagtccattgttcttcgcatattcgaaagccgcttattcagcaacagggcctattcactttgatgtcattttcaaccttaccaaactttagtaaagttaccaaaaaaaagtggctacatttaatttactgtcaaattttgataactatataagaaatcctgccaaaatttttgtaagttgccatataccaaaattttggcaatatcaaattttggtaagttttttttcttcaaagtgaacaggcccataatcttcgcaacagggataccaatcctgcaaacaggaagcagtaaatatcacagtttagtcatcgtgtaaattctctatgaaaagggcaggctgaagttgcaaaaccaacgaggaatcagacatctgtatggacagaacctagtcatttacaatcggctgcttgaaagtgatttatatttattgttctggcaaagtggcaatcagttgcagtaagaaagtattacttcctctgtttttaaagatatggcacaattgactttttaatataagagtaaaatacacggccggtccttaaagttgaacgcgggtgttacttaggtccataatcttgtaaattgcacatctagttccaccatcttgtttaagtgactcattgaggtccaaaggacctccgaccgggttgtttggcttacatggcttacgcggagcgctacctcctcctccgctccgtcgacggccgcccgagcaacctccgccgccgccagcgcccgagcgtcgtcctcgtcgtcgtcctccactcctctgtcgccatttctcaatgccgccgtggtggtgagctggtgaggggcggcgtggcagcaggatcccaacgccgccgtgatgttacggatcccggcgtcgccgcgacactgctgtccaccgcccgcccccgtgtgctcgcccaccgctgctctaccctccgccgcgcttgctcaccgccgcccgtagccgtggtgcgcgatgaggggggtgtccggtggcgagcgcgcatggagaaggaggaggggggtggctaatggcgaacgcgcgaggagaaggaggagacggagaggcgttttgctcggcctcggcctcgtcgtctctcgtgcgccaccgctgtctccactcgagcgtgtgtgtcgtgctaatgtgctgcttgctactggcgcttgtggtgccgtcggtagcggcggcggcgtggcatgactacgacgaaggatttggggttttttgtgttgtccttggcgctactgttgcggaggggtttgtttgcaaaattggtgcttgcgtggcgtgccacgtcggcggtcagggccggtcatgttgggtttggatctcaatgagtcacttaaacaagatggtggacctagatgtgcaatttacaagattatggacctaagtgacacccgcgctcaactttaagaaccggccatgcattttactcttaatataatattggactattcgtcttattaaaagatctagtgtaaatatgctaaaaatataagtcatgtttaaagaatatttaatgataaaaaagcacaataaaataaataattctcacatagattttttaataagaagaaaggttaaatattatatatatatatatatatatatatatatatatatatatatatatatatatataaaagtcaacaacatcatatatttaaaccgaggtagtataagttatttgtaagaaaagtactaacaaaatatataacctcattcttttcgcagagcgctaggtctgaccagcaactctcatatttgagtctatttggaggtcagtccgggttaacatcaacagcagcattggaggacatcacaacaactttctgaaccttagcaaccgagcaagccttcagcacattcaatgttcccttcacagcaggatcaatcacttctgactgcaacggatgcattcaaaacattgtttttttttaaagcacattcaaaacattgtgagttcagagtttcagcaacttagttgagcaatcaggacaagcttcagttgagctatcagaacaatattccgtactgtaacacatgaactgagttactggtggagaaatgctctgtagtcccggttggtagcccatcgctatctttagtcccggtaaataaccgggagtaaagatcgatctttagttactgtcggtgacatgggaccgggagtatcatgactagaggcttgggcaggagcaatcacccacgaggcctgaccccctcggggggggggggggtcgggcccgagggtgatgtggccgcccccctctttgtctccgcgaggggtcggaccgctcccgtttcggccccgaggactgaggcgccccgaccccttgtaggttttgcgccgcgtgtatgggttaggtgagcgcagcggggctcacctaaccgcatttattgcggtttggatgagcgcgtcacgccgcatgtaacgcagtgcagtgcgttcgtttatccggtctgtgaccagtcacagaacgatcagatcgtgggttaggtggcgacaggcggtctgacgcacgcctcgccccatcccgtcaggatgagagcctccaagcactcgtccctagccggagccggcgtgttagctcctggaggtggcacgttggacccggtcagatatatgccaggcttcatcccaaccattacaagcaagatattgtatgaagaagggcgaacatgcagattgctaaactgacacgtggtggacaagaatgaccgatttgtgaccggtctgacactggtcatgtcgtcggcagacagtcatgttcccacgtcgcacctgcttccggcggaagtggaggtaggtatgggccgtcccatcaaaaggtcattcggacggcaaccattacaaatctccgcccatttatgaaggaaaggcgggccaagtttgaggaaaaagagggaaataggtagaagtggtgcatgtggtatccccttgagatataaaaggaggaccttgcccacttagcgcggggaggctggattcggaaccagaaaaggagagcggaacaaaaggagagggggggagagagttagagctctctggctctccagctctttgtagcttcttcatacacagatccaccagaacacaggagtagggtattacgcttcttagcggcccgaacctgtatacatcgcccgtgtcttgtgcttttttcattctcgcgaactttccacagactaggagcttagaacctcacccagggcccccggccgaaccggcaaaggggggcctgcgcggtctcccggtgaggagccccacgctccgtcagttaccaaccgggattgttactaactgggactaaagatctttttccttttatttttctctttttcattgtttttaacattaaatattgatttcaccccatccttaaattataccaagaaatcccaaatctaaatcattacgtatcacataacatctccaaatccacaaatagatcatctctaaatacatcacaaactcttaaaaacattacatcacaatttctaaaaaatacatcacaaattctcatcacacacaaatttaattcattgcaggataaatcataaattgtaaaaaaaaaaagaagccggccggccattgccgcctcccctcctcccctccgtgctggccggccgccgccacacaggccgtctccgtgcggcccccacgccgccgcgcaggccgccgcccggccggcccgccctctttctcatgccgctccaccttctccactgttacaaaaaggaaagagaaggcttggagttagagataaggaaaaagataagaagttagagaggaaaatagagatagagggaggagtttgttgtgtggacgggaaaataggataagtactagggattagggattatatagagcgttttgatttttattcccggttagtaacatcaaccgagacttaaaaataggtttttagtcccggttgatgttactaaccgggactaaagattttagggccctgacacggcctgtcatggaatcaacagggactaaagatcatctttaatcccgattatgatttttaagtcccggttggtaacaacaaccgggactaaagatcaactagtcatattcctcttataaaccgggactaaaaaattatttttaatcctggtttttaatgaaaccggcactattgtggatttggatcgaccgatcaatgatagttttctaatattgagttaagagtacactgaagatgcattagcagtagcagattgattagcatcaaacttgcctccggatcgacaatcttatcctcgggcaccggagtcgcgaggtggaagacgccgtcgcagccctgaaccgcgtgcgttagcgcgtcgaggtcgagcacgtcggcggtgaacagccgcagattcgccggggccgcctgggacgcgtcctgaagccgctccagattggcgttcttgggatcacctgacgggaaatcagagagcattacgccattaattaatcaaggacactatgcaaatgcgtcactctcctgtttggccatgaatgaatcactccaattttcttggctgaactgttcaatcttcaggttggaaatggatgtagcaagaggccaagagagcggtaatggtgccaatatattggtgaataatttggtgatgaacagttactatacatgggtcgcggagggtggcgtggacggcgtagccacgggagaggagcagcttgacgagccaggaggcgatgaacccgccgcctccggtgacgcacacgcgcggcggcgccggcgacgccat
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| CDS seq | atggcgtcgccggcgccgccgcgcgtgtgcgtcaccggaggcggcgggttcatcgcctcctggctcgtcaagctgctcctctcccgtggctacgccgtccacgccaccctccgcgacccatgtgatcccaagaacgccaatctggagcggcttcaggacgcgtcccaggcggccccggcgaatctgcggctgttcaccgccgacgtgctcgacctcgacgcgctaacgcacgcggttcagggctgcgacggcgtcttccacctcgcgactccggtgcccgaggataagattgtcgatccggaggcaagaggccctgatgtgatgaacaacaaactgtggcacatagtcgatgtccgtgatgtggccgatgccttacatttgctcatccctgatgtggagcataaagcgtcattgacatcgcagaagctgatgagcctgggctgggcgccaaggaggctggaggagacgctctcggacagcgtcgattgctacgaaaatgcaggcattctgaagattttggatgggcatccttgccgacttccccatctcttcaggttgtctgctgacaattga
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| Protein seq | MASPAPPRVCVTGGGGFIASWLVKLLLSRGYAVHATLRDPCDPKNANLERLQDASQAAPANLRLFTADVLDLDALTHAVQGCDGVFHLATPVPEDKIVDPEARGPDVMNNKLWHIVDVRDVADALHLLIPDVEHKASLTSQKLMSLGWAPRRLEETLSDSVDCYENAGILKILDGHPCRLPHLFRLSADN |
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| Function | Cinnamoyl-CoA reductase 1 [UniProtKB/Swiss-Prot:Q9S9N9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0015030 | OsLima_09g0015030.01 | Chr09 | 19765471 | 19772096 | - | NAM | ||
| CDS seq | atggcgtcgccggcgccgccgcgcgtgtgcgtcaccggaggcggcgggttcatcgcctcctggctcgtcaagctgctcctctcccgtggctacgccgtccacgccaccctccgcgacccatgtgatcccaagaacgccaatctggagcggcttcaggacgcgtcccaggcggccccggcgaatctgcggctgttcaccgccgacgtgctcgacctcgacgcgctaacgcacgcggttcagggctgcgacggcgtcttccacctcgcgactccggtgcccgaggataagattgtcgatccggaggcaagaggccctgatgtgatgaacaacaaactgtggcacatagtcgatgtccgtgatgtggccgatgccttacatttgctcatccctgatgtggagcataaagcgtcattgacatcgcagaagctgatgagcctgggctgggcgccaaggaggctggaggagacgctctcggacagcgtcgattgctacgaaaatgcaggcattctgaagattttggatgggcatccttgccgacttccccatctcttcaggttgtctgctgacaattga
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| Protein seq | MASPAPPRVCVTGGGGFIASWLVKLLLSRGYAVHATLRDPCDPKNANLERLQDASQAAPANLRLFTADVLDLDALTHAVQGCDGVFHLATPVPEDKIVDPEARGPDVMNNKLWHIVDVRDVADALHLLIPDVEHKASLTSQKLMSLGWAPRRLEETLSDSVDCYENAGILKILDGHPCRLPHLFRLSADN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0491868 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g31522 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0491868 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015070 | SBH | 1.592517 | 3.665046 | 2.891791 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015050 | SBH | 1.507178 | 0.0 | 1.983260 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015300 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015110 | SBH | 0.396966 | 0.052282 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015210 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0320200 | SBH | 9.232932 | 0.6471495 | 1.3743395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015060 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0308700 | SBH | 12.783332 | 0.8248655 | 4.413597 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021130 | RBH | 0.094008 | 0.111475 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015370 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015190 | RBH | 0.0 | 0.0 | 0.0 |
