Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0014910 | OGI:09055770 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:19687089-19688117 | ||||||||
| Gene Symbol | PGIP7, Ospgip7, pgip7, OsPGIP7 | ||||||||||
| DNA seq | ctacaggccgccgtcgcagcagggaggcagcggggcaccacacaggcacctgttgcgagcgtagcaatccgcgccgtgcgccgccatgaacctccccgccggaatctcgccgcagagctcgttgtcgctgacgttgaggtgctccagcctgacgtccatcagcgacttggccaccttcccggtgatccggttgtggctgaggtcgaggtacctgaggtggtgcgggaacctcaccccggtcatgtcgaacgccagctcgttccacgacaggtcgatcttggccgccggcgccgcgatcccgaacaggtgcggcgacgggtcgccggtgaggcggttgtgcgagaggtcgacggtgtccacgtcgccgtagcagcgcggtatctcgccggtgagctggttgtgggagaggatcaagaacctgaagctgccgtgtaccagccccggcgggatggcgccggtgaggaagttgccgctgaggtcgaggtaccggaggttggggtggtcgccggcgagggacggcgggatcggcccggcgagcctgctgtcggcgatgacgagggtacggaggttggtggcgccggcgaggtaggacgccggcaccgggccggagatggaggtgccggtgatgtcgaggtcctcgagcagcgagaggttggcgaaggagggcgggatgggtcccgacatgccccggacggacgcgatctggaggacggcgagccccgtcagctcgccgagcgccggcggcacgggcgcggcgacgccggcgagggagaagagcgccagcccggtgacgcggccgggctcgccggagcagaacacggcgggctcccacgcgcagcagttggtcgacggccgccacgacgacagcctgacggggtcgcccagctgcgccttcaccctcagcagcgcggcgcggtcgtcgccgttgcactccaccgccgacgagacggcggtgcaggcggacaggacgacgacgacgaggcagagcagtggaatccacgacgaggctactactgttgcattggccat
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| CDS seq | atggccaatgcaacagtagtagcctcgtcgtggattccactgctctgcctcgtcgtcgtcgtcctgtccgcctgcaccgccgtctcgtcggcggtggagtgcaacggcgacgaccgcgccgcgctgctgagggtgaaggcgcagctgggcgaccccgtcaggctgtcgtcgtggcggccgtcgaccaactgctgcgcgtgggagcccgccgtgttctgctccggcgagcccggccgcgtcaccgggctggcgctcttctccctcgccggcgtcgccgcgcccgtgccgccggcgctcggcgagctgacggggctcgccgtcctccagatcgcgtccgtccggggcatgtcgggacccatcccgccctccttcgccaacctctcgctgctcgaggacctcgacatcaccggcacctccatctccggcccggtgccggcgtcctacctcgccggcgccaccaacctccgtaccctcgtcatcgccgacagcaggctcgccgggccgatcccgccgtccctcgccggcgaccaccccaacctccggtacctcgacctcagcggcaacttcctcaccggcgccatcccgccggggctggtacacggcagcttcaggttcttgatcctctcccacaaccagctcaccggcgagataccgcgctgctacggcgacgtggacaccgtcgacctctcgcacaaccgcctcaccggcgacccgtcgccgcacctgttcgggatcgcggcgccggcggccaagatcgacctgtcgtggaacgagctggcgttcgacatgaccggggtgaggttcccgcaccacctcaggtacctcgacctcagccacaaccggatcaccgggaaggtggccaagtcgctgatggacgtcaggctggagcacctcaacgtcagcgacaacgagctctgcggcgagattccggcggggaggttcatggcggcgcacggcgcggattgctacgctcgcaacaggtgcctgtgtggtgccccgctgcctccctgctgcgacggcggcctgtag
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| Protein seq | MANATVVASSWIPLLCLVVVVLSACTAVSSAVECNGDDRAALLRVKAQLGDPVRLSSWRPSTNCCAWEPAVFCSGEPGRVTGLALFSLAGVAAPVPPALGELTGLAVLQIASVRGMSGPIPPSFANLSLLEDLDITGTSISGPVPASYLAGATNLRTLVIADSRLAGPIPPSLAGDHPNLRYLDLSGNFLTGAIPPGLVHGSFRFLILSHNQLTGEIPRCYGDVDTVDLSHNRLTGDPSPHLFGIAAPAAKIDLSWNELAFDMTGVRFPHHLRYLDLSHNRITGKVAKSLMDVRLEHLNVSDNELCGEIPAGRFMAAHGADCYARNRCLCGAPLPPCCDGGL |
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| Function | Polygalacturonase inhibitor 1 [UniProtKB/Swiss-Prot:Q8GT95] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0014910 | OsLima_09g0014910.01 | Chr09 | 19687089 | 19688117 | - | NAM | ||
| CDS seq | atggccaatgcaacagtagtagcctcgtcgtggattccactgctctgcctcgtcgtcgtcgtcctgtccgcctgcaccgccgtctcgtcggcggtggagtgcaacggcgacgaccgcgccgcgctgctgagggtgaaggcgcagctgggcgaccccgtcaggctgtcgtcgtggcggccgtcgaccaactgctgcgcgtgggagcccgccgtgttctgctccggcgagcccggccgcgtcaccgggctggcgctcttctccctcgccggcgtcgccgcgcccgtgccgccggcgctcggcgagctgacggggctcgccgtcctccagatcgcgtccgtccggggcatgtcgggacccatcccgccctccttcgccaacctctcgctgctcgaggacctcgacatcaccggcacctccatctccggcccggtgccggcgtcctacctcgccggcgccaccaacctccgtaccctcgtcatcgccgacagcaggctcgccgggccgatcccgccgtccctcgccggcgaccaccccaacctccggtacctcgacctcagcggcaacttcctcaccggcgccatcccgccggggctggtacacggcagcttcaggttcttgatcctctcccacaaccagctcaccggcgagataccgcgctgctacggcgacgtggacaccgtcgacctctcgcacaaccgcctcaccggcgacccgtcgccgcacctgttcgggatcgcggcgccggcggccaagatcgacctgtcgtggaacgagctggcgttcgacatgaccggggtgaggttcccgcaccacctcaggtacctcgacctcagccacaaccggatcaccgggaaggtggccaagtcgctgatggacgtcaggctggagcacctcaacgtcagcgacaacgagctctgcggcgagattccggcggggaggttcatggcggcgcacggcgcggattgctacgctcgcaacaggtgcctgtgtggtgccccgctgcctccctgctgcgacggcggcctgtag
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| Protein seq | MANATVVASSWIPLLCLVVVVLSACTAVSSAVECNGDDRAALLRVKAQLGDPVRLSSWRPSTNCCAWEPAVFCSGEPGRVTGLALFSLAGVAAPVPPALGELTGLAVLQIASVRGMSGPIPPSFANLSLLEDLDITGTSISGPVPASYLAGATNLRTLVIADSRLAGPIPPSLAGDHPNLRYLDLSGNFLTGAIPPGLVHGSFRFLILSHNQLTGEIPRCYGDVDTVDLSHNRLTGDPSPHLFGIAAPAAKIDLSWNELAFDMTGVRFPHHLRYLDLSHNRITGKVAKSLMDVRLEHLNVSDNELCGEIPAGRFMAAHGADCYARNRCLCGAPLPPCCDGGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0491612 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g31450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0491612 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0014980 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0014960 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015190 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015020 | RBH | 0.063108 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015090 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0319100 | RBH | 0.159055 | 0.010182 | 0.1056965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0014940 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0307800 | RBH | 0.202333 | 0.0507115 | 0.330933 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015260 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015070 | RBH | 0.0 | 0.0 | 0.0 |
