Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0013990 | OGI:09053240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:18916248-18916991 | ||||||||
| Gene Symbol | DOF25, OsDof25, Dof25, OsDof-25 | ||||||||||
| DNA seq | acgagagagcgcgcgcgcgtgttcgtccgagcttttctgcgggcgcgcatgcaggaggcggggcgacggccggcgccgcagttcgcgggcgtggacctccgccggccgaaggggtacccggcggcggcgcagctgacgccggcggcggaggaggcggcagccggcgtgggcgacccgtgcccgcggtgcgagtcgcgggacaccaagttctgctactacaacaactacaacacgtcgcagccgcggcacttctgcaagtcgtgccgccgctactggaccaagggcggctccctccgcaacgtccccgtcggcggcggctcccgcaagagctcgacttcctcctcctcctcctcctccgccgccgccgcctcatcgtcgtcgtcgccttcttcgccagccaagagccccaagcgctccaagaactccaagcgccgccgcgtctccccgccccctcctcagcccgcgcctgcgccgccgccgcccaccaccgccgacgctgccgacgtagccgcaccgacggcaccagaagacacaaccaagaaagccccggaagacctcaccgcggcggcagcgacacagccggcggtggcgctcgggctcggcgtcgccgacggcggcggcggcgggaaggagcacctggacacgagcccgttcgagtggccgtcgggctgcgacctcgggccgtactggccaaccggcgtgttcgccgacaccgatccatcactgttccttaacctgccatga
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| CDS seq | atgcaggaggcggggcgacggccggcgccgcagttcgcgggcgtggacctccgccggccgaaggggtacccggcggcggcgcagctgacgccggcggcggaggaggcggcagccggcgtgggcgacccgtgcccgcggtgcgagtcgcgggacaccaagttctgctactacaacaactacaacacgtcgcagccgcggcacttctgcaagtcgtgccgccgctactggaccaagggcggctccctccgcaacgtccccgtcggcggcggctcccgcaagagctcgacttcctcctcctcctcctcctccgccgccgccgcctcatcgtcgtcgtcgccttcttcgccagccaagagccccaagcgctccaagaactccaagcgccgccgcgtctccccgccccctcctcagcccgcgcctgcgccgccgccgcccaccaccgccgacgctgccgacgtagccgcaccgacggcaccagaagacacaaccaagaaagccccggaagacctcaccgcggcggcagcgacacagccggcggtggcgctcgggctcggcgtcgccgacggcggcggcggcgggaaggagcacctggacacgagcccgttcgagtggccgtcgggctgcgacctcgggccgtactggccaaccggcgtgttcgccgacaccgatccatcactgttccttaacctgccatga
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| Protein seq | MQEAGRRPAPQFAGVDLRRPKGYPAAAQLTPAAEEAAAGVGDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGSRKSSTSSSSSSSAAAASSSSSPSSPAKSPKRSKNSKRRRVSPPPPQPAPAPPPPTTADAADVAAPTAPEDTTKKAPEDLTAAAATQPAVALGLGVADGGGGGKEHLDTSPFEWPSGCDLGPYWPTGVFADTDPSLFLNLP |
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| Function | Dof zinc finger protein MNB1A [UniProtKB/Swiss-Prot:P38564] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0013990 | OsLima_09g0013990.01 | Chr09 | 18916248 | 18916991 | + | NAM | ||
| CDS seq | atgcaggaggcggggcgacggccggcgccgcagttcgcgggcgtggacctccgccggccgaaggggtacccggcggcggcgcagctgacgccggcggcggaggaggcggcagccggcgtgggcgacccgtgcccgcggtgcgagtcgcgggacaccaagttctgctactacaacaactacaacacgtcgcagccgcggcacttctgcaagtcgtgccgccgctactggaccaagggcggctccctccgcaacgtccccgtcggcggcggctcccgcaagagctcgacttcctcctcctcctcctcctccgccgccgccgcctcatcgtcgtcgtcgccttcttcgccagccaagagccccaagcgctccaagaactccaagcgccgccgcgtctccccgccccctcctcagcccgcgcctgcgccgccgccgcccaccaccgccgacgctgccgacgtagccgcaccgacggcaccagaagacacaaccaagaaagccccggaagacctcaccgcggcggcagcgacacagccggcggtggcgctcgggctcggcgtcgccgacggcggcggcggcgggaaggagcacctggacacgagcccgttcgagtggccgtcgggctgcgacctcgggccgtactggccaaccggcgtgttcgccgacaccgatccatcactgttccttaacctgccatga
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| Protein seq | MQEAGRRPAPQFAGVDLRRPKGYPAAAQLTPAAEEAAAGVGDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGSRKSSTSSSSSSSAAAASSSSSPSSPAKSPKRSKNSKRRRVSPPPPQPAPAPPPPTTADAADVAAPTAPEDTTKKAPEDLTAAAATQPAVALGLGVADGGGGGKEHLDTSPFEWPSGCDLGPYWPTGVFADTDPSLFLNLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.093283 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0475800 | RBH | 0.0 | 0.0 | 0.635968 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g29960 | RBH | 0.0 | 0.0 | 0.158016 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0475800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013960 | RBH | 0.385737 | 0.0 | 2.575462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0013910 | RBH | 0.0 | 0.0 | 0.320967 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014170 | RBH | 0.0 | 2.822432 | 1.018453 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0014000 | RBH | 0.072326 | 0.059032 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0014100 | RBH | 0.547131 | 0.0 | 4.480113 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0304600 | RBH | 8.722991 | 22.8253965 | 13.4349695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0014000 | RBH | 0.0 | 0.325594 | 0.380252 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0294800 | RBH | 8.6510465 | 11.455642 | 3.1332145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019410 | RBH | 0.0 | 0.281054 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013800 | RBH | 0.176160 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013760 | RBH | 0.260875 | 0.0 | 1.223342 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013820 | RBH | 0.235822 | 1.389446 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014300 | RBH | 0.0 | 0.0 | 0.334353 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0014080 | RBH | 0.0 | 4.021418 | 3.164872 |
