Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0013880 | OGI:09053030 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:18815956-18820278 | ||||||||
| Gene Symbol | DUA1, OsDUA1 | ||||||||||
| DNA seq | atgcctcctcccaccgtccccttcttcctcacctccaccacgctcgccgctgcggccgcgaagccgcagcggcccgggccgccctcgccaccggcgcagcagcagcagccgcgcgaggcgcgggatggttctcgggacgcgtgcgcgtcgtacaccgcgcgcatgcggctcaacccgcagctcgcgctccgcctgttcgaccacctgctccgctcgggcgccgacccggaccacgtggcgtacgccctcgcgctgggccgctgcgcgcgcgggcgggaccaccgcgccgccgcgcagctccactcgcacgccgctaagcgaggggccgcgtcccaccgtcgcgtctgcaacgggctcatccacgcgtacgccgtctgcgggtcgctgctcgacgcgcgcaaggtgttcgaccgcgggcacgagggtgacgcggtggcatggaactccctgctgcgcgggtacgcggctgctggggacgtgaacgcgctccgggagttcttcgtggggatgcaagcccgggacacggtttcgtggaacacgatcatcgcgtggtgcgttgagaatggggaatatgaggaggcaattgcggtgttccgtgagatgctggcaagcatggagtgtcttcctgacagagtcacactggtgagcgtcatctcagcgattacatatttgggtgcactagcccaggggctgtgggcgcatgcatatgtttgcaggaaaggtatcgaagtcgaggagaggctgagctcagctctcataaacatgtattcaaagtgcggttgcattgaaggtgcagttcatgtgtttgaaaatctgggtgcacagatgaatgtggacacatggaacgctatgttagctggcttcacagcaaatggatgcagtgagaaagctctggagcttttcgctaggatggagataacaggtttggtgcctaacaagattactttcaacactgtgctgaatgcttgtagtcatggtggttttgttgaggaaggtatggggtgtttcgagagaatgaccaaggtttatggtattgagcctgacattgcccactatggttgcatggtggatctgttctgtcgtgcagggctttttgacaaggctgaaaagatgatccaaatgatgcctatgaaaccagatgctgctgtgtggaaggccctagtgggtgcttgtaaaactcacaggaactttgaactgggaaggaaagcaggccatatgcttattgaggctgcaccaaatgatcacgcagggtatgtgctgctatccaacatatatgcactagatggaaactggacaggagtgcataaggtgaggaagctgatgcttgatcgtggtgtgcagaaggtacctggaagcagctcaatagaaattgatggtgtaattcatgagttcatatctggggataaaagccattcaagcaaggaggacatatacgagatgctaagtgaaatgtgtcagcaattgaaagttgcaggatatgttccagatacttcacatgtgctactagatattgatgatgaggatgtgaaggagagctcactagctcttcacagcgagaagcttgcaattgcctttggattgataagcactgcaccaggcacgcctattaggatagcaaagaacctccgggtttgtggagattgtcataatgccgttaaacttctaagcaagatttatgggaggtgcataattgttagggatgcaaatcgatttcatcatttcagagaaggatcatgctcttgcggggatttctggtaacttcagttgagctacaattctatttctttgtagttgtaaatgttaacacaaaaatatatggcatgtgggaaaagttttggaaatggttatagttgttcgtctgagaacagttgagggtctttacttgattccacgtctctattaaaagctaaggtatccataaaccaacaccatgattactaccctcttgtgtctcagcaacttgaaacctaattattgttccttttcagtctccatgatccagtactgaacatgaatctgagatgtatgtcctacgcaaaagttcaattaaaaataaattcaactccttccatatggtaggggctacaaatcatcaataacctgatacatacttaatgctttttttctctagtgttgttactgtaattgttgagatggcagcttcacatgaacttgcattttaaagagggaaaatagtaggtgtctaggtgatagggacaacttgggcaggcatctgcttgcctttttagtgagtaagtcctgtttttagcttctgcttgccaatgaaaaccttcttcattcatctattcttccacacaatccattgccttttatgccaattcatttatattgtttgctcatgttagattcttctactttgtctgtgcatctattctgttctttgcgcactatacattcatccatgacatcctacatatgtaatgcaagtattgaatatgttattgaacaattgagttatactacagcttatttgtgtcacaaaaaagtctttcaagttacaatagtctggaaacaaatctagtaatagagtactttacaagtacagtgataaagtgggattagttgtccctgggttatacctttcgtattctttggcaaaggcccagatgacagatttattctactgttatgttcttaactgtccttcagggtctgaaaattcatgtactaggaaagctatacccctgggagaacagttacccactagatttgctagttcttttatcttgcttgttgcctgttgttgatgttgaatgagacatgaagtgctctgcgcaagaaatggtagcagttgtttaattcacaaacaaagtaaagtgcgagtttgtgataaggacaaagatcaacactatttggcagaagtaatcacttccaccatgctgttgttattacttcctggtggtctggtcgatgtagggcctttgatttgaacatatgacaagggagtgtctttgacgcaattgcatgtttattgggcatttgcaagcttacagcatagatattatctaatgtcacattcatgaagatggagttgtagttgctagtagcctagtacagaggttgcattaaatcctctaaataggaaaagtttagatcttcatggtgtcaaattcgaatgtttatgcccttgagaaacactgaacctttgcaactttatatagcattccgtaaggacatcatcatggtaaaagggaaggatacaaagaatcatgtgcgatcttctcatattgtgatgtctagagagaacacataaatttaaattaaatcaacactttcccatgtaaagtagaaagatttgaaacattactgagttcttaacctttaagagaaaactcactacacttctacagttctatgtgaactatcatggccaccactccaccagcactctgttcaactggttagtttacagctttgcattctgtaggcaccacaaatgcatatactgcaatattagttatccagatctggtacattacaactaggaattggtagccttttttccttcacacacaaggcaacacagacacgcatgcatacgcatatgcacacgcacataatgttatatgatgtatagtagaaatgcagctccatgccaatcattaataggttggccttgacaaaataagctgcctgctgcccttatcaactctacttgtttattttctcttgggagaagttttttagtgttccccagatatgtaatttgtggcctaggccctagtttataactctaatcactactctaggagtataataagaccattagcgcatggcacaatgcataattatggtttggaataatcggtaatacatatgcatggtttggattatatagcccgcaagatggttttcacctaacatagacctttaccaaaaatatactcacttgcatctcgcgtgcagctggctttgccacggactgtgctttgtttatggtttacagaaaggtgtaacatacgctttcctaagcaaaattagagatcctgtaccctagcacatgggaaccgaatgctgaattaacacacaggtgtactcacaatgctgagatactatgggccaacttgtactgtaatcaaatcatccatgttcaattctaatcatccattcttggtaatgatcccattaagactgcttttctgttctttgcttctcgatacatctttctagtaactgtttgcacaaacttttttagcatgtagtacaaattatgataggcatgggggtttggtttgatcgttcttttactttgagtaagcttagaatgtattgaaaacctttctattctgttctagatcttag
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| CDS seq | atgcctcctcccaccgtccccttcttcctcacctccaccacgctcgccgctgcggccgcgaagccgcagcggcccgggccgccctcgccaccggcgcagcagcagcagccgcgcgaggcgcgggatggttctcgggacgcgtgcgcgtcgtacaccgcgcgcatgcggctcaacccgcagctcgcgctccgcctgttcgaccacctgctccgctcgggcgccgacccggaccacgtggcgtacgccctcgcgctgggccgctgcgcgcgcgggcgggaccaccgcgccgccgcgcagctccactcgcacgccgctaagcgaggggccgcgtcccaccgtcgcgtctgcaacgggctcatccacgcgtacgccgtctgcgggtcgctgctcgacgcgcgcaaggtgttcgaccgcgggcacgagggtgacgcggtggcatggaactccctgctgcgcgggtacgcggctgctggggacgtgaacgcgctccgggagttcttcgtggggatgcaagcccgggacacggtttcgtggaacacgatcatcgcgtggtgcgttgagaatggggaatatgaggaggcaattgcggtgttccgtgagatgctggcaagcatggagtgtcttcctgacagagtcacactggtgagcgtcatctcagcgattacatatttgggtgcactagcccaggggctgtgggcgcatgcatatgtttgcaggaaaggtatcgaagtcgaggagaggctgagctcagctctcataaacatgtattcaaagtgcggttgcattgaaggtgcagttcatgtgtttgaaaatctgggtgcacagatgaatgtggacacatggaacgctatgttagctggcttcacagcaaatggatgcagtgagaaagctctggagcttttcgctaggatggagataacaggtttggtgcctaacaagattactttcaacactgtgctgaatgcttgtagtcatggtggttttgttgaggaaggtatggggtgtttcgagagaatgaccaaggtttatggtattgagcctgacattgcccactatggttgcatggtggatctgttctgtcgtgcagggctttttgacaaggctgaaaagatgatccaaatgatgcctatgaaaccagatgctgctgtgtggaaggccctagtgggtgcttgtaaaactcacaggaactttgaactgggaaggaaagcaggccatatgcttattgaggctgcaccaaatgatcacgcaggatcttag
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| Protein seq | MPPPTVPFFLTSTTLAAAAAKPQRPGPPSPPAQQQQPREARDGSRDACASYTARMRLNPQLALRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCNGLIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTLVSVISAITYLGALAQGLWAHAYVCRKGIEVEERLSSALINMYSKCGCIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGS |
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| Function | Pentatricopeptide repeat-containing protein At5g48910 [UniProtKB/Swiss-Prot:Q9FI80] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0013880 | OsLima_09g0013880.01 | Chr09 | 18815956 | 18820278 | + | NAM | ||
| CDS seq | atgcctcctcccaccgtccccttcttcctcacctccaccacgctcgccgctgcggccgcgaagccgcagcggcccgggccgccctcgccaccggcgcagcagcagcagccgcgcgaggcgcgggatggttctcgggacgcgtgcgcgtcgtacaccgcgcgcatgcggctcaacccgcagctcgcgctccgcctgttcgaccacctgctccgctcgggcgccgacccggaccacgtggcgtacgccctcgcgctgggccgctgcgcgcgcgggcgggaccaccgcgccgccgcgcagctccactcgcacgccgctaagcgaggggccgcgtcccaccgtcgcgtctgcaacgggctcatccacgcgtacgccgtctgcgggtcgctgctcgacgcgcgcaaggtgttcgaccgcgggcacgagggtgacgcggtggcatggaactccctgctgcgcgggtacgcggctgctggggacgtgaacgcgctccgggagttcttcgtggggatgcaagcccgggacacggtttcgtggaacacgatcatcgcgtggtgcgttgagaatggggaatatgaggaggcaattgcggtgttccgtgagatgctggcaagcatggagtgtcttcctgacagagtcacactggtgagcgtcatctcagcgattacatatttgggtgcactagcccaggggctgtgggcgcatgcatatgtttgcaggaaaggtatcgaagtcgaggagaggctgagctcagctctcataaacatgtattcaaagtgcggttgcattgaaggtgcagttcatgtgtttgaaaatctgggtgcacagatgaatgtggacacatggaacgctatgttagctggcttcacagcaaatggatgcagtgagaaagctctggagcttttcgctaggatggagataacaggtttggtgcctaacaagattactttcaacactgtgctgaatgcttgtagtcatggtggttttgttgaggaaggtatggggtgtttcgagagaatgaccaaggtttatggtattgagcctgacattgcccactatggttgcatggtggatctgttctgtcgtgcagggctttttgacaaggctgaaaagatgatccaaatgatgcctatgaaaccagatgctgctgtgtggaaggccctagtgggtgcttgtaaaactcacaggaactttgaactgggaaggaaagcaggccatatgcttattgaggctgcaccaaatgatcacgcaggatcttag
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| Protein seq | MPPPTVPFFLTSTTLAAAAAKPQRPGPPSPPAQQQQPREARDGSRDACASYTARMRLNPQLALRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCNGLIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTLVSVISAITYLGALAQGLWAHAYVCRKGIEVEERLSSALINMYSKCGCIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0013880 | OsLima_09g0013880.02 | Chr09 | 18816928 | 18817793 | + | IsoSeq | ||
| CDS seq | atggtattgagcctgacattgcccactatggttgcatggtggatctgttctgtcgtgcagggctttttgacaaggctgaaa |
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| Protein seq | MVLSLTLPTMVAWWICSVVQGFLTRLK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.283188 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0474051 | RBH | 0.978617 | 1.202647 | 0.746775 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g39970 | SBH | 0.372048 | 0.656922 | 0.274125 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0474051 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013840 | RBH | 0.392773 | 2.590455 | 1.543405 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0013790 | RBH | 0.000000 | 1.423432 | 1.088692 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014050 | RBH | 0.639980 | 5.645256 | 1.120918 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013880 | RBH | 0.319489 | 0.153608 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0013990 | RBH | 9.560941 | 2.747098 | 4.524216 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0303100 | RBH | 1.9483915 | 4.3539605 | 2.0422935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0013890 | RBH | 0.230156 | 0.000000 | 0.285404 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0231900 | SBH | 0.507407 | 1.003224 | 2.4105375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020140 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013680 | RBH | 0.416862 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013770 | RBH | 4.494446 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013650 | RBH | 0.411854 | 0.0 | 1.142458 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013710 | RBH | 0.187232 | 1.937511 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014180 | RBH | 0.227405 | 1.109779 | 0.965687 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0013960 | RBH | 0.957400 | 0.0 | 5.645951 |
