Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_09g0013280 OGI:09051600 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr09:18244131-18245135
Gene Symbol -
DNA seq

ttagtacggcggcggcggcggcgggtgcggcgtacgagccggcggcggccacatcacctcctgtggctgagggtggcaggcgtacatgggcgcgccgcatggctccaccggctgtgctgctgagacggcggcggctgctgacaggtgcggtggcggccgtcgaagttggcgcggttcttgcggctcaggtttgtgctggtggccccggtgttcgtccgcgtcgccgctgccggagagtgacaccgagacggacaccgacgcgtcgtcgtcggcggggaggcggtggaaggtggggttggtgaaggcggcggcgacgaccacgacggtggtcgcggcgtagagcgggcctgccacggccccgccgacgatctggccgtgcgggccggcgagcgagatggagaggcccgcggcggcgaccgcggcctggggcgccacggaggacatggccggaggcaggaacgtggccgacagggagaggatctcgtaccggccgtggaacacgatcgccgccggagctgagcccgggaccccgggtgacgggtggcggagcgacacgttggcgaccgcgccggtgccggcgagcacgcagatcccgaggttccgacggctcgagaaccgcgcgagcgcctccgcgacgtcccgcccgccggggatctcgatcacgtgcggccgcatcgccgccgccggctccgcctcccgcgtgatcaccacgggcggcttcggcttgttcttggaccccggcggcctccccctcctcttcttcgccacctcgatgctcgccccatccccgccaccaacaacgaccagctgcccactcccgctccccacggcatccttcatctcgccgccactcccgcggctgtccacctcgtcggagaagcactccaccagctgctgctgctgctgctgctgaggcggcggcggcgtcgcgaaccgtatccccgccatgtcgtcccgttcttggtacatgctctccttgttcatgtccctctcgcagaacgacat

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CDS seq

atgtcgttctgcgagagggacatgaacaaggagagcatgtaccaagaacgggacgacatggcggggatacggttcgcgacgccgccgccgcctcagcagcagcagcagcagcagctggtggagtgcttctccgacgaggtggacagccgcgggagtggcggcgagatgaaggatgccgtggggagcgggagtgggcagctggtcgttgttggtggcggggatggggcgagcatcgaggtggcgaagaagaggagggggaggccgccggggtccaagaacaagccgaagccgcccgtggtgatcacgcgggaggcggagccggcggcggcgatgcggccgcacgtgatcgagatccccggcgggcgggacgtcgcggaggcgctcgcgcggttctcgagccgtcggaacctcgggatctgcgtgctcgccggcaccggcgcggtcgccaacgtgtcgctccgccacccgtcacccggggtcccgggctcagctccggcggcgatcgtgttccacggccggtacgagatcctctccctgtcggccacgttcctgcctccggccatgtcctccgtggcgccccaggccgcggtcgccgccgcgggcctctccatctcgctcgccggcccgcacggccagatcgtcggcggggccgtggcaggcccgctctacgccgcgaccaccgtcgtggtcgtcgccgccgccttcaccaaccccaccttccaccgcctccccgccgacgacgacgcgtcggtgtccgtctcggtgtcactctccggcagcggcgacgcggacgaacaccggggccaccagcacaaacctgagccgcaagaaccgcgccaacttcgacggccgccaccgcacctgtcagcagccgccgccgtctcagcagcacagccggtggagccatgcggcgcgcccatgtacgcctgccaccctcagccacaggaggtgatgtggccgccgccggctcgtacgccgcacccgccgccgccgccgccgtactaa

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Protein seq

MSFCERDMNKESMYQERDDMAGIRFATPPPPQQQQQQQLVECFSDEVDSRGSGGEMKDAVGSGSGQLVVVGGGDGASIEVAKKRRGRPPGSKNKPKPPVVITREAEPAAAMRPHVIEIPGGRDVAEALARFSSRRNLGICVLAGTGAVANVSLRHPSPGVPGSAPAAIVFHGRYEILSLSATFLPPAMSSVAPQAAVAAAGLSISLAGPHGQIVGGAVAGPLYAATTVVVVAAAFTNPTFHRLPADDDASVSVSVSLSGSGDADEHRGHQHKPEPQEPRQLRRPPPHLSAAAAVSAAQPVEPCGAPMYACHPQPQEVMWPPPARTPHPPPPPPY

Function AT-hook motif nuclear-localized protein 17 [UniProtKB/Swiss-Prot:Q9LTA2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_09g0013280 OsLima_09g0013280.01 Chr09 18244131 18245135 - NAM
CDS seq

atgtcgttctgcgagagggacatgaacaaggagagcatgtaccaagaacgggacgacatggcggggatacggttcgcgacgccgccgccgcctcagcagcagcagcagcagcagctggtggagtgcttctccgacgaggtggacagccgcgggagtggcggcgagatgaaggatgccgtggggagcgggagtgggcagctggtcgttgttggtggcggggatggggcgagcatcgaggtggcgaagaagaggagggggaggccgccggggtccaagaacaagccgaagccgcccgtggtgatcacgcgggaggcggagccggcggcggcgatgcggccgcacgtgatcgagatccccggcgggcgggacgtcgcggaggcgctcgcgcggttctcgagccgtcggaacctcgggatctgcgtgctcgccggcaccggcgcggtcgccaacgtgtcgctccgccacccgtcacccggggtcccgggctcagctccggcggcgatcgtgttccacggccggtacgagatcctctccctgtcggccacgttcctgcctccggccatgtcctccgtggcgccccaggccgcggtcgccgccgcgggcctctccatctcgctcgccggcccgcacggccagatcgtcggcggggccgtggcaggcccgctctacgccgcgaccaccgtcgtggtcgtcgccgccgccttcaccaaccccaccttccaccgcctccccgccgacgacgacgcgtcggtgtccgtctcggtgtcactctccggcagcggcgacgcggacgaacaccggggccaccagcacaaacctgagccgcaagaaccgcgccaacttcgacggccgccaccgcacctgtcagcagccgccgccgtctcagcagcacagccggtggagccatgcggcgcgcccatgtacgcctgccaccctcagccacaggaggtgatgtggccgccgccggctcgtacgccgcacccgccgccgccgccgccgtactaa

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Protein seq

MSFCERDMNKESMYQERDDMAGIRFATPPPPQQQQQQQLVECFSDEVDSRGSGGEMKDAVGSGSGQLVVVGGGDGASIEVAKKRRGRPPGSKNKPKPPVVITREAEPAAAMRPHVIEIPGGRDVAEALARFSSRRNLGICVLAGTGAVANVSLRHPSPGVPGSAPAAIVFHGRYEILSLSATFLPPAMSSVAPQAAVAAAGLSISLAGPHGQIVGGAVAGPLYAATTVVVVAAAFTNPTFHRLPADDDASVSVSVSLSGSGDADEHRGHQHKPEPQEPRQLRRPPPHLSAAAAVSAAQPVEPCGAPMYACHPQPQEVMWPPPARTPHPPPPPPY

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_09g0464300 RBH 0.0 0.0 0.900311
Nipponbare | IRGSP 1.0 | MSU LOC_Os09g28930 RBH 0.0 0.0 0.225215
Nipponbare | IRGSP 1.0 | RAP-db Os09g0464300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_09g0013290 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_09g0013240 RBH 0.0 0.0 0.421371
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_09g0013500 RBH 0.0 0.0 0.656621
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_09g0013300 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_09g0013400 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_09G0294100 RBH 0.0948645 0 1.431459
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_09g0013300 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_09G0284600 RBH 0.177961 0.0136215 3.32873
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0018670 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_09g0013090 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_09g0013170 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_09g0013060 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_09g0013120 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_09G013600 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_09g0013370 RBH 0.0 0.0 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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