Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0011840 | OGI:09047780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:16927187-16930337 | ||||||||
| Gene Symbol | OsSub57, SUB57 | ||||||||||
| DNA seq | aactccctccattcgctaacactgcccagcatgcagcagccacccttcctcctcgctctagccgtcctcgtcgttgtctcgtcgtgcgtgcggctcgtctccggcgccggcgatggggcggcgacctacattgtctacctgaacccggcactcaagccggccccgtacgccactcacctacactggcaccacgcccacctggcctccctctccgtcgacccctcgcgtcatctcctctactcctacacctccgccgcgccgtcagccttcgccgcgcgcctcctgccgtcgcacgtcgcggcgctccgcggccaccccgccgtcgcgtccgtccatgaagacgtcatcctcccgctccacaccacgcgctcgcctctgttcctccacctcccgccgtacgacgcccctgacgccgacggtgcgagcaccgacgtcatcattggcgtgctcgacaccggcgtctggcccgagagccccagcttcggcgacgtcggcatgggcccggtgccttcgcggtggcgcgggagctgcgagaccaatgccaccgacttcccgtcgtcgatgtgcaaccgcaagctcatcggcgcccgcgccttcttccggggatatggggccggcggcggcgggaacggttcccacgtcagcctcgagttctcctcgccgagggaccacgacggtcacggcacgcacacggcgtcgacggcggccggcgccgtcgtggccgacgcgggactcctcggctacgcggaaggcacggcccgcggcatggcgcccggtgcgcgcgtcgcggcgtacaaggtgtgctggaggcaggggtgtttcagctccgacatactagccggcatggagaaggccatcgatgacggcgtcgacgttctctcgctgtctcttggcggcggcgcgttcccgctctcgcgtgaccccatcgcggtcggcgcgctcgcggccactcgccgcggcatcgtcgtggcgtgctccgcggggaacagtggtccttctctgtcgtcgctggtgaacactgctccgtgggtgatcaccgtcggtgcaggcacgctcgacaggaacttcccggcgtacgccgagctcgggaacggcgagacccacgccggcatgtcgctctactccggcgacgggctcggcgacgagaagctcccggtcgtgtacaacaaaggcatccgcgccggcagcaatgcgagcaagctctgcatggagggcacgctggacgcggcggcggtgaagggcaaggtggtcctgtgcgaccgcggcggcaactcgagggtggagaaggggctggtggtgaagcaggccggcggcgtcggtatggtgctcgcgaacaccgcgcagagcggcgaggaggtcgtggccgacagccaccttctccccgcggtggccgtcggcgccaagagcggcgacgccataaggaggtacgtggagtcggacgccgacgccgaggtggggctaaccttcgccggcacggcgctcgacgtgcggccggcgccggtggtggccgcgttcagctcgcgtgggccgaacaggcaggtggcgcagctgctcaagccggacgtgatcgggccgggggtgaacatcctcgccggctggacggggtccgtcgggccgaccggactcaccgtcgacgagcggcggtcgccgttcaacatcttgtcaggtcagtgcacgctttgccccctccatgcaagtagccctgtacgtagactgtagtataccgactgaaagtatgttgcttactctaattagtaattagtgtgttgcaccgaaagttcgagcacggactttacggtccggcgtgctcgagaatagatcagtaccagctaacagtagctgtttgatgccgttatgatcatatttggtcatgatggtgctgtttagctttcaagtgctgtagtgcagttcgcatgcacccaaatggcatgatatgctcgacagtcggcatgactttagttgcacgatattctgacatgtgtctggctatgtctctctttttttgcactgaaccttggtagtagattcgtaatttacattgctgaaagctgcactctcagcttaattatatattttgagccataaaattaactagagtgattaaagactcaatcgtgatatcgcaggaacatccatgtcatgcccgcacatcagcggcctcgccgccttcgtcaaggcggcacacccggactggagccccagcgcaatcaagtcggcgctcatgaccaccgcatacaccgtcgacaacaccggctcgccgatcgtcgacgccgccagcaacaccacggcgacgccgtggtccatcggcgccggccacgtggaccccgtcaaggccctctccccgggcctcgtctacgacacctccgtcgacgactacgtcgccttcctgtgctccgtcggcacgtcgccgccgcaggtccaggccatcacggcggcgcccaacgtgacgtgccagcggaagctgtccagccccggggacctcaactacccgtcgttctccgtcgtgttcggccggcggtcgtcgtcgtcgcgcagcaccaccgtcaagtaccggcgcgagctgaccaacgtcggcgacggcaggtcggtgtacaccgcgagggtcaccgggccgagcgacatagccgtggccgtgaagccggcgaggctcgcgttcaagaaggccggggacaagctgaggtacaccgtgacgttcaagtcgacgacgcccggtggcccgacggatgccgcgttcgggtggctgacctggagcaacggcgagcacgacgtgcgcagcccgatatcgtacacgtgggggatgtgacacgtatcgattattacgggcttacggcgattaattaaccagcatgctaacatgacgggcaagatgggagattggaagtgttcgaccggaggctggaagaattctggcttcgtttatgtgttgctatgttggttgtcctggcaagctagctgggcgcgcggtcatcggtatgtgttatccggtgatatctttcagctttatgagtttcccaaagagggattataaggccgctctagttcgtcgccgtcagctggctcccggtgtagctaattttacttcacggtgttgtacttctgttaatcacggcgaagcaaagaaaataagagacatgacatgtacgtcgatcca
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| CDS seq | atgcagcagccacccttcctcctcgctctagccgtcctcgtcgttgtctcgtcgtgcgtgcggctcgtctccggcgccggcgatggggcggcgacctacattgtctacctgaacccggcactcaagccggccccgtacgccactcacctacactggcaccacgcccacctggcctccctctccgtcgacccctcgcgtcatctcctctactcctacacctccgccgcgccgtcagccttcgccgcgcgcctcctgccgtcgcacgtcgcggcgctccgcggccaccccgccgtcgcgtccgtccatgaagacgtcatcctcccgctccacaccacgcgctcgcctctgttcctccacctcccgccgtacgacgcccctgacgccgacggtgcgagcaccgacgtcatcattggcgtgctcgacaccggcgtctggcccgagagccccagcttcggcgacgtcggcatgggcccggtgccttcgcggtggcgcgggagctgcgagaccaatgccaccgacttcccgtcgtcgatgtgcaaccgcaagctcatcggcgcccgcgccttcttccggggatatggggccggcggcggcgggaacggttcccacgtcagcctcgagttctcctcgccgagggaccacgacggtcacggcacgcacacggcgtcgacggcggccggcgccgtcgtggccgacgcgggactcctcggctacgcggaaggcacggcccgcggcatggcgcccggtgcgcgcgtcgcggcgtacaaggtgtgctggaggcaggggtgtttcagctccgacatactagccggcatggagaaggccatcgatgacggcgtcgacgttctctcgctgtctcttggcggcggcgcgttcccgctctcgcgtgaccccatcgcggtcggcgcgctcgcggccactcgccgcggcatcgtcgtggcgtgctccgcggggaacagtggtccttctctgtcgtcgctggtgaacactgctccgtgggtgatcaccgtcggtgcaggcacgctcgacaggaacttcccggcgtacgccgagctcgggaacggcgagacccacgccggcatgtcgctctactccggcgacgggctcggcgacgagaagctcccggtcgtgtacaacaaaggcatccgcgccggcagcaatgcgagcaagctctgcatggagggcacgctggacgcggcggcggtgaagggcaaggtggtcctgtgcgaccgcggcggcaactcgagggtggagaaggggctggtggtgaagcaggccggcggcgtcggtatggtgctcgcgaacaccgcgcagagcggcgaggaggtcgtggccgacagccaccttctccccgcggtggccgtcggcgccaagagcggcgacgccataaggaggtacgtggagtcggacgccgacgccgaggtggggctaaccttcgccggcacggcgctcgacgtgcggccggcgccggtggtggccgcgttcagctcgcgtgggccgaacaggcaggtggcgcagctgctcaagccggacgtgatcgggccgggggtgaacatcctcgccggctggacggggtccgtcgggccgaccggactcaccgtcgacgagcggcggtcgccgttcaacatcttgtcaggaacatccatgtcatgcccgcacatcagcggcctcgccgccttcgtcaaggcggcacacccggactggagccccagcgcaatcaagtcggcgctcatgaccaccgcatacaccgtcgacaacaccggctcgccgatcgtcgacgccgccagcaacaccacggcgacgccgtggtccatcggcgccggccacgtggaccccgtcaaggccctctccccgggcctcgtctacgacacctccgtcgacgactacgtcgccttcctgtgctccgtcggcacgtcgccgccgcaggtccaggccatcacggcggcgcccaacgtgacgtgccagcggaagctgtccagccccggggacctcaactacccgtcgttctccgtcgtgttcggccggcggtcgtcgtcgtcgcgcagcaccaccgtcaagtaccggcgcgagctgaccaacgtcggcgacggcaggtcggtgtacaccgcgagggtcaccgggccgagcgacatagccgtggccgtgaagccggcgaggctcgcgttcaagaaggccggggacaagctgaggtacaccgtgacgttcaagtcgacgacgcccggtggcccgacggatgccgcgttcgggtggctgacctggagcaacggcgagcacgacgtgcgcagcccgatatcgtacacgtgggggatgtga
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| Protein seq | MQQPPFLLALAVLVVVSSCVRLVSGAGDGAATYIVYLNPALKPAPYATHLHWHHAHLASLSVDPSRHLLYSYTSAAPSAFAARLLPSHVAALRGHPAVASVHEDVILPLHTTRSPLFLHLPPYDAPDADGASTDVIIGVLDTGVWPESPSFGDVGMGPVPSRWRGSCETNATDFPSSMCNRKLIGARAFFRGYGAGGGGNGSHVSLEFSSPRDHDGHGTHTASTAAGAVVADAGLLGYAEGTARGMAPGARVAAYKVCWRQGCFSSDILAGMEKAIDDGVDVLSLSLGGGAFPLSRDPIAVGALAATRRGIVVACSAGNSGPSLSSLVNTAPWVITVGAGTLDRNFPAYAELGNGETHAGMSLYSGDGLGDEKLPVVYNKGIRAGSNASKLCMEGTLDAAAVKGKVVLCDRGGNSRVEKGLVVKQAGGVGMVLANTAQSGEEVVADSHLLPAVAVGAKSGDAIRRYVESDADAEVGLTFAGTALDVRPAPVVAAFSSRGPNRQVAQLLKPDVIGPGVNILAGWTGSVGPTGLTVDERRSPFNILSGTSMSCPHISGLAAFVKAAHPDWSPSAIKSALMTTAYTVDNTGSPIVDAASNTTATPWSIGAGHVDPVKALSPGLVYDTSVDDYVAFLCSVGTSPPQVQAITAAPNVTCQRKLSSPGDLNYPSFSVVFGRRSSSSRSTTVKYRRELTNVGDGRSVYTARVTGPSDIAVAVKPARLAFKKAGDKLRYTVTFKSTTPGGPTDAAFGWLTWSNGEHDVRSPISYTWGM |
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| Function | Subtilisin-like protease SBT1.8 [UniProtKB/Swiss-Prot:Q9ZUF6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0011840 | OsLima_09g0011840.01 | Chr09 | 16927187 | 16930337 | + | NAM | ||
| CDS seq | atgcagcagccacccttcctcctcgctctagccgtcctcgtcgttgtctcgtcgtgcgtgcggctcgtctccggcgccggcgatggggcggcgacctacattgtctacctgaacccggcactcaagccggccccgtacgccactcacctacactggcaccacgcccacctggcctccctctccgtcgacccctcgcgtcatctcctctactcctacacctccgccgcgccgtcagccttcgccgcgcgcctcctgccgtcgcacgtcgcggcgctccgcggccaccccgccgtcgcgtccgtccatgaagacgtcatcctcccgctccacaccacgcgctcgcctctgttcctccacctcccgccgtacgacgcccctgacgccgacggtgcgagcaccgacgtcatcattggcgtgctcgacaccggcgtctggcccgagagccccagcttcggcgacgtcggcatgggcccggtgccttcgcggtggcgcgggagctgcgagaccaatgccaccgacttcccgtcgtcgatgtgcaaccgcaagctcatcggcgcccgcgccttcttccggggatatggggccggcggcggcgggaacggttcccacgtcagcctcgagttctcctcgccgagggaccacgacggtcacggcacgcacacggcgtcgacggcggccggcgccgtcgtggccgacgcgggactcctcggctacgcggaaggcacggcccgcggcatggcgcccggtgcgcgcgtcgcggcgtacaaggtgtgctggaggcaggggtgtttcagctccgacatactagccggcatggagaaggccatcgatgacggcgtcgacgttctctcgctgtctcttggcggcggcgcgttcccgctctcgcgtgaccccatcgcggtcggcgcgctcgcggccactcgccgcggcatcgtcgtggcgtgctccgcggggaacagtggtccttctctgtcgtcgctggtgaacactgctccgtgggtgatcaccgtcggtgcaggcacgctcgacaggaacttcccggcgtacgccgagctcgggaacggcgagacccacgccggcatgtcgctctactccggcgacgggctcggcgacgagaagctcccggtcgtgtacaacaaaggcatccgcgccggcagcaatgcgagcaagctctgcatggagggcacgctggacgcggcggcggtgaagggcaaggtggtcctgtgcgaccgcggcggcaactcgagggtggagaaggggctggtggtgaagcaggccggcggcgtcggtatggtgctcgcgaacaccgcgcagagcggcgaggaggtcgtggccgacagccaccttctccccgcggtggccgtcggcgccaagagcggcgacgccataaggaggtacgtggagtcggacgccgacgccgaggtggggctaaccttcgccggcacggcgctcgacgtgcggccggcgccggtggtggccgcgttcagctcgcgtgggccgaacaggcaggtggcgcagctgctcaagccggacgtgatcgggccgggggtgaacatcctcgccggctggacggggtccgtcgggccgaccggactcaccgtcgacgagcggcggtcgccgttcaacatcttgtcaggaacatccatgtcatgcccgcacatcagcggcctcgccgccttcgtcaaggcggcacacccggactggagccccagcgcaatcaagtcggcgctcatgaccaccgcatacaccgtcgacaacaccggctcgccgatcgtcgacgccgccagcaacaccacggcgacgccgtggtccatcggcgccggccacgtggaccccgtcaaggccctctccccgggcctcgtctacgacacctccgtcgacgactacgtcgccttcctgtgctccgtcggcacgtcgccgccgcaggtccaggccatcacggcggcgcccaacgtgacgtgccagcggaagctgtccagccccggggacctcaactacccgtcgttctccgtcgtgttcggccggcggtcgtcgtcgtcgcgcagcaccaccgtcaagtaccggcgcgagctgaccaacgtcggcgacggcaggtcggtgtacaccgcgagggtcaccgggccgagcgacatagccgtggccgtgaagccggcgaggctcgcgttcaagaaggccggggacaagctgaggtacaccgtgacgttcaagtcgacgacgcccggtggcccgacggatgccgcgttcgggtggctgacctggagcaacggcgagcacgacgtgcgcagcccgatatcgtacacgtgggggatgtga
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| Protein seq | MQQPPFLLALAVLVVVSSCVRLVSGAGDGAATYIVYLNPALKPAPYATHLHWHHAHLASLSVDPSRHLLYSYTSAAPSAFAARLLPSHVAALRGHPAVASVHEDVILPLHTTRSPLFLHLPPYDAPDADGASTDVIIGVLDTGVWPESPSFGDVGMGPVPSRWRGSCETNATDFPSSMCNRKLIGARAFFRGYGAGGGGNGSHVSLEFSSPRDHDGHGTHTASTAAGAVVADAGLLGYAEGTARGMAPGARVAAYKVCWRQGCFSSDILAGMEKAIDDGVDVLSLSLGGGAFPLSRDPIAVGALAATRRGIVVACSAGNSGPSLSSLVNTAPWVITVGAGTLDRNFPAYAELGNGETHAGMSLYSGDGLGDEKLPVVYNKGIRAGSNASKLCMEGTLDAAAVKGKVVLCDRGGNSRVEKGLVVKQAGGVGMVLANTAQSGEEVVADSHLLPAVAVGAKSGDAIRRYVESDADAEVGLTFAGTALDVRPAPVVAAFSSRGPNRQVAQLLKPDVIGPGVNILAGWTGSVGPTGLTVDERRSPFNILSGTSMSCPHISGLAAFVKAAHPDWSPSAIKSALMTTAYTVDNTGSPIVDAASNTTATPWSIGAGHVDPVKALSPGLVYDTSVDDYVAFLCSVGTSPPQVQAITAAPNVTCQRKLSSPGDLNYPSFSVVFGRRSSSSRSTTVKYRRELTNVGDGRSVYTARVTGPSDIAVAVKPARLAFKKAGDKLRYTVTFKSTTPGGPTDAAFGWLTWSNGEHDVRSPISYTWGM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0441000 | RBH | 0.0 | 0.104936 | 0.375135 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g26920 | RBH | 0.0 | 0.118424 | 0.081016 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0441000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0011850 | RBH | 0.0 | 3.413034 | 3.645975 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0011760 | RBH | 0.095442 | 1.992119 | 0.356329 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0012040 | RBH | 0.0 | 0.0 | 2.073429 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0011810 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011930 | RBH | 1.337218 | 5.358737 | 0.482612 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0270300 | RBH | 1.430847 | 4.3810675 | 1.531193 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0011880 | RBH | 0.0 | 0.0 | 0.045647 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0260300 | RBH | 2.021911 | 0.5142895 | 2.855155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0017350 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0011640 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011730 | RBH | 0.0 | 8.084829 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0011530 | RBH | 0.136994 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0011630 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G012140 | RBH | 0.0 | 0.330520 | 0.170723 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0011920 | RBH | 0.0 | 2.933622 | 1.143777 |
