Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0010240 | OGI:09043560 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:15261951-15264383 | ||||||||
| Gene Symbol | PPR1, OsPPR1, rPPR1 | ||||||||||
| DNA seq | ttacaccatactccatccaggttctttatttacacccttcattgtttttctgattctagctacttcctcccaatctccagaattcgcaagaatgttcgacagagttgcaaaggaacctgaatcataatttccttcacggatcttattttctacaaaccgtccaagtacagtgtcatcatgaactctgcaagcagcaactagggtgctccataccatcaagtctggtttcataggcatgctatcaacaaaatattttgcctctgcaagcctcccagatcgaccaagtaaatcaaccatgcaacagtagtgctgtaactctggctcaaccccatatgcagttctcattgaattaaaatagttaaaaccttgctcaactaaaccattacggctgcatgcagacaaaacactcactaatacaacagtatctggtcttaccccaagctgaaccatcaaatcaaacattgccaatgcattctgactacttccatgctgagcatacccatcaattatagtggtccatgcaactaagtctgggacacttatttcatcaaaaactttacgagaatcatccatattgccacttctggagtacaccttcacaagtgaactgcttactgactgatcagacaatatgcctgctttaattgcatatccatgtaatggtttacaatagaatggtcttgctatatcagcacataggctaagaatagacgagcatatataactatctattcgaatgcttgctgccaccataagctgaaataatgagattgcttcctcaccgcaaccatttgtagcatatccagatatcattgaggaccacatgacctgatctttgcatggagttgcatcaaaaattcttctagctgtttgtaccccttgacattttgaatacatggaaataaaacaatcgtttatgaatgtggtttctccatagacacgaagtgtgtgaccatgaacttccttccctttgagtaaacactctgatctattacaagctgaaagaatggcagttaacgacacatgatctggcttaaatccatcaagaatcatattcctgaatgttaggaatgcctcaactgaatgaccatgcgtagcaaaaccagcaaccattgctgtccatgagactccatctcgttcctgcatctcttcaaaaaccttgtagctatcctgaacattatcacatctagagtacatggtggagagtgcactgccaacaagaataccatgaatgaacccctcttttatggctgatgaatgaagttgtccaccaaactcaattgaatttacagagctgaaaacagaagcatagcatttgtcattcggtcttagaccttgatgaaacatcctccttaacaactgaactgatctcagaaggctatggttactgaccccagatatgaaggctgaccaaatacttctattgcttactgtgccagcttcttcaaacactttctccgacaactcaataaacccaaagttagtgtacgtcgaaatcaatgcctccttgacaacgcaatccaagtacatctctgtcttcaaaaccataccatgtatctggctagcctctcttaccatagacatctgagcgcaagcaagcaagatacttgtggctgtgtatttgttgatcgccacgccattccgcaccatttccctaagtagcagcattgcactgactggctcatcatcctgaacgaaaccggctatcgcggtggtccacgaaaccacattccggactggcattctccagaactccctcatggcagcacccatatcaccacatttcgcatacatgttaacaagcgacgttccaacgaacacatcgtactcaggatcacgccgaagcaccagaccatgcaccgcccgcccaacgctcagctcttcacccgccgcgcacgcgctgagagccccggagtaagtgaacgagttgggctcgcacgagccccacaccatatcacggaacatctcgacggcgagcccgccctcgccgttccgcaccgccccggagacggccgcgttccagcacacggcgctgctcgggtccccgtccgcgaacaccctgagcgcgtcccggaggcggccgctcttggcgagcaggtcgaccatgccggtgcagacgtacgcgttcccggagagcccgtccttccatgcggcgcagtagacctgctcggcaagcgcgggggcgggggcgcgggcgcacgcggcgagcgcgttgccgtaggagaactggctcggcgcggcgcgccccgcggcgcgcgcgcgggcgaacgacacgagctcggcggggaggcgcgcgaggaggtcgggtgcccgcggccgcattccgccgaacaggtggggcgcgccctccccagcgcgcggggcgaacgcggagagcgcgcgaaggtgggcggcggcgagaggggtggaggagcggaggaggcgaggcggcat
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| CDS seq | atgccgcctcgcctcctccgctcctccacccctctcgccgccgcccaccttcgcgcgctctccgcgttcgccccgcgcgctggggagggcgcgccccacctgttcggcggaatgcggccgcgggcacccgacctcctcgcgcgcctccccgccgagctcgtgtcgttcgcccgcgcgcgcgccgcggggcgcgccgcgccgagccagttctcctacggcaacgcgctcgccgcgtgcgcccgcgcccccgcccccgcgcttgccgagcaggtctactgcgccgcatggaaggacgggctctccgggaacgcgtacgtctgcaccggcatggtcgacctgctcgccaagagcggccgcctccgggacgcgctcagggtgttcgcggacggggacccgagcagcgccgtgtgctggaacgcggccgtctccggggcggtgcggaacggcgagggcgggctcgccgtcgagatgttccgtgatatggtgtggggctcgtgcgagcccaactcgttcacttactccggggctctcagcgcgtgcgcggcgggtgaagagctgagcgttgggcgggcggtgcatggtctggtgcttcggcgtgatcctgagtacgatgtgttcgttggaacgtcgcttgttaacatgtatgcgaaatgtggtgatatgggtgctgccatgagggagttctggagaatgccagtccggaatgtggtttcgtggaccaccgcgatagccggtttcgttcaggatgatgagccagtcagtgcaatgctgctacttagggaaatggtgcggaatggcgtggcgatcaacaaatacacagccacaagtatcttgcttgcttgcgctcagatgtctatggtaagagaggctagccagatacatggtatggttttgaagacagagatgtacttggattgcgttgtcaaggaggcattgatttcgacgtacactaactttgggtttattgagttgtcggagaaagtgtttgaagaagctggcacagtaagcaatagaagtatttggtcagccttcatatctggggtcagtaaccatagccttctgagatcagttcagttgttaaggaggatgtttcatcaaggtctaagaccgaatgacaaatgctatgcttctgttttcagctctgtaaattcaattgagtttggtggacaacttcattcatcagccataaaagaggggttcattcatggtattcttgttggcagtgcactctccaccatgtactctagatgtgataatgttcaggatagctacaaggtttttgaagagatgcaggaacgagatggagtctcatggacagcaatggttgctggttttgctacgcatggtcattcagttgaggcattcctaacattcaggaatatgattcttgatggatttaagccagatcatgtgtcgttaactgccattctttcagcttgtaatagatcagagtgtttactcaaagggaaggaagttcatggtcacacacttcgtgtctatggagaaaccacattcataaacgattgttttatttccatgtattcaaaatgtcaaggggtacaaacagctagaagaatttttgatgcaactccatgcaaagatcaggtcatgtggtcctcaatgatatctggatatgctacaaatggttgcggtgaggaagcaatctcattatttcagcttatggtggcagcaagcattcgaatagatagttatatatgctcgtctattcttagcctatgtgctgatatagcaagaccattctattgtaaaccattacatggatatgcaattaaagcaggcatattgtctgatcagtcagtaagcagttcacttgtgaaggtgtactccagaagtggcaatatggatgattctcgtaaagtttttgatgaaataagtgtcccagacttagttgcatggaccactataattgatgggtatgctcagcatggaagtagtcagaatgcattggcaatgtttgatttgatggttcagcttggggtaagaccagatactgttgtattagtgagtgttttgtctgcatgcagccgtaatggtttagttgagcaaggttttaactattttaattcaatgagaactgcatatggggttgagccagagttacagcactactgttgcatggttgatttacttggtcgatctgggaggcttgcagaggcaaaatattttgttgatagcatgcctatgaaaccagacttgatggtatggagcaccctagttgctgcttgcagagttcatgatgacactgtacttggacggtttgtagaaaataagatccgtgaaggaaattatgattcaggttcctttgcaactctgtcgaacattcttgcgaattctggagattgggaggaagtagctagaatcagaaaaacaatgaagggtgtaaataaagaacctggatggagtatggtgtaa
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| Protein seq | MPPRLLRSSTPLAAAHLRALSAFAPRAGEGAPHLFGGMRPRAPDLLARLPAELVSFARARAAGRAAPSQFSYGNALAACARAPAPALAEQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEVHGHTLRVYGETTFINDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLVAACRVHDDTVLGRFVENKIREGNYDSGSFATLSNILANSGDWEEVARIRKTMKGVNKEPGWSMV |
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| Function | Pentatricopeptide repeat-containing protein At1g74600, chloroplastic [UniProtKB/Swiss-Prot:Q9CA56] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0010240 | OsLima_09g0010240.01 | Chr09 | 15261951 | 15264383 | - | NAM | ||
| CDS seq | atgccgcctcgcctcctccgctcctccacccctctcgccgccgcccaccttcgcgcgctctccgcgttcgccccgcgcgctggggagggcgcgccccacctgttcggcggaatgcggccgcgggcacccgacctcctcgcgcgcctccccgccgagctcgtgtcgttcgcccgcgcgcgcgccgcggggcgcgccgcgccgagccagttctcctacggcaacgcgctcgccgcgtgcgcccgcgcccccgcccccgcgcttgccgagcaggtctactgcgccgcatggaaggacgggctctccgggaacgcgtacgtctgcaccggcatggtcgacctgctcgccaagagcggccgcctccgggacgcgctcagggtgttcgcggacggggacccgagcagcgccgtgtgctggaacgcggccgtctccggggcggtgcggaacggcgagggcgggctcgccgtcgagatgttccgtgatatggtgtggggctcgtgcgagcccaactcgttcacttactccggggctctcagcgcgtgcgcggcgggtgaagagctgagcgttgggcgggcggtgcatggtctggtgcttcggcgtgatcctgagtacgatgtgttcgttggaacgtcgcttgttaacatgtatgcgaaatgtggtgatatgggtgctgccatgagggagttctggagaatgccagtccggaatgtggtttcgtggaccaccgcgatagccggtttcgttcaggatgatgagccagtcagtgcaatgctgctacttagggaaatggtgcggaatggcgtggcgatcaacaaatacacagccacaagtatcttgcttgcttgcgctcagatgtctatggtaagagaggctagccagatacatggtatggttttgaagacagagatgtacttggattgcgttgtcaaggaggcattgatttcgacgtacactaactttgggtttattgagttgtcggagaaagtgtttgaagaagctggcacagtaagcaatagaagtatttggtcagccttcatatctggggtcagtaaccatagccttctgagatcagttcagttgttaaggaggatgtttcatcaaggtctaagaccgaatgacaaatgctatgcttctgttttcagctctgtaaattcaattgagtttggtggacaacttcattcatcagccataaaagaggggttcattcatggtattcttgttggcagtgcactctccaccatgtactctagatgtgataatgttcaggatagctacaaggtttttgaagagatgcaggaacgagatggagtctcatggacagcaatggttgctggttttgctacgcatggtcattcagttgaggcattcctaacattcaggaatatgattcttgatggatttaagccagatcatgtgtcgttaactgccattctttcagcttgtaatagatcagagtgtttactcaaagggaaggaagttcatggtcacacacttcgtgtctatggagaaaccacattcataaacgattgttttatttccatgtattcaaaatgtcaaggggtacaaacagctagaagaatttttgatgcaactccatgcaaagatcaggtcatgtggtcctcaatgatatctggatatgctacaaatggttgcggtgaggaagcaatctcattatttcagcttatggtggcagcaagcattcgaatagatagttatatatgctcgtctattcttagcctatgtgctgatatagcaagaccattctattgtaaaccattacatggatatgcaattaaagcaggcatattgtctgatcagtcagtaagcagttcacttgtgaaggtgtactccagaagtggcaatatggatgattctcgtaaagtttttgatgaaataagtgtcccagacttagttgcatggaccactataattgatgggtatgctcagcatggaagtagtcagaatgcattggcaatgtttgatttgatggttcagcttggggtaagaccagatactgttgtattagtgagtgttttgtctgcatgcagccgtaatggtttagttgagcaaggttttaactattttaattcaatgagaactgcatatggggttgagccagagttacagcactactgttgcatggttgatttacttggtcgatctgggaggcttgcagaggcaaaatattttgttgatagcatgcctatgaaaccagacttgatggtatggagcaccctagttgctgcttgcagagttcatgatgacactgtacttggacggtttgtagaaaataagatccgtgaaggaaattatgattcaggttcctttgcaactctgtcgaacattcttgcgaattctggagattgggaggaagtagctagaatcagaaaaacaatgaagggtgtaaataaagaacctggatggagtatggtgtaa
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| Protein seq | MPPRLLRSSTPLAAAHLRALSAFAPRAGEGAPHLFGGMRPRAPDLLARLPAELVSFARARAAGRAAPSQFSYGNALAACARAPAPALAEQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEVHGHTLRVYGETTFINDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLVAACRVHDDTVLGRFVENKIREGNYDSGSFATLSNILANSGDWEEVARIRKTMKGVNKEPGWSMV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.067988 | 0.124690 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0413300 | RBH | 0.336500 | 0.534016 | 0.502860 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g24680 | RBH | 0.233689 | 0.580530 | 0.122715 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0413300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010170 | RBH | 0.233732 | 1.033318 | 1.635655 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010120 | RBH | 0.104903 | 1.326026 | 0.982612 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010420 | RBH | 0.173098 | 0.0 | 3.301631 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010180 | RBH | 0.058428 | 0.042789 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010290 | RBH | 2.087214 | 2.838548 | 3.244075 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0247600 | RBH | 1.2465075 | 3.690676 | 1.354451 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010250 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0233400 | RBH | 1.395203 | 3.8744655 | 5.9583045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016400 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010180 | RBH | 1.760144 | 0.816378 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009980 | RBH | 0.151521 | 0.0 | 0.018799 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010040 | RBH | 0.097054 | 1.139883 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010510 | RBH | 0.193322 | 0.927237 | 0.714742 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010310 | RBH | 1.758005 | 6.499052 | 3.701491 |
