Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0010190 | OGI:09043510 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:15240410-15241946 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccgctctccacctccacgccctcatcgccggcggcggcgccgccaccaccgtcccccatctccggcagatccacgcccatctcctcacctccggccgcttaccctccctcggccccgtcctcctccgccgcctcatttcgctgcccaatccccacctccacctcgcccaccgtctcctcctctccctcccctccccatccctcgacctcttcaacctcctccttcccccgctcgcctcctcgccggacccctccaccgccgccgccctcttcctccgcctccgccgcgggggtctccgccccgacgcgcacacgctcccgcacgtcctcaaggcgctcgcgcgcctcgccccgggatccctccccgttgtcggatccgtgcactcggaggccgtcaaggacggcctcgcctccgcggtggtgtacgtcccgaacgcgctcatggccgcgtactcggcctgtgggcaactggagcgcgccgtgcaggtgttcgacgaaatgccgcgccggaccgtcgtgtcctggaacaccgcgctcaccgcctgcgcgggcaacggccaccacgagctgtgcgtcgagctgttcgcggagatgctagaggctggttccgtgccggacctgaccacgttcgtggtcatgctgtccgccgcggccgagctgggcaacctggcgctcggcaagtgggcgcatggacaggttgtttcccggaggctggacatgacgcttcagcttgggacggcggcagtgaacatgtactccaagtgtggcgcggtgagttatgccctgcgcttgttcgagaggatgcccgcgaggaatgtctggacatggactgccatgatcgtagggtttgcgcagaatggtttggctcaggaagcgctggagctgtttgacaggatgaaactctcaaagatcatacccaattatgtcacatttcttggtctgctttgtgcatgtagccatgctggcctggttgatgaggggcgccggttcttccacgaaatgcagcatgtttatggtatcgtgccgatgatgacgcactacagcgccatggttgatgtcctgggccgcaacggtcttctccaggaagcttatgactttgttgtaggaatgccagtcgaggctgacccagttgtgtggaggacattattggcagcctgccagctgcatagctccaaggactgtattgagatcattgacaaggtgcagggcaaactgctggagctagagccccggagaagtgggaactacgtcatggtttcaaacatctactgcgaaattggatcatgggacgaggcagcgaaggcaaggagggtgatgagggaaggagggatgaagaaggttgcgggagagagttgtgttgaggtgggaggacgggtgcatcggttcgtcttcggggatgattcttgccctgaatttcatggggcttgtaggattctccatgaattgaatctcaacatgagaaaatgtgaacctattgacccaatcttatttactgatgatgctgactagctttcaaatttcgtgcattcttttc
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| CDS seq | atggccgctctccacctccacgccctcatcgccggcggcggcgccgccaccaccgtcccccatctccggcagatccacgcccatctcctcacctccggccgcttaccctccctcggccccgtcctcctccgccgcctcatttcgctgcccaatccccacctccacctcgcccaccgtctcctcctctccctcccctccccatccctcgacctcttcaacctcctccttcccccgctcgcctcctcgccggacccctccaccgccgccgccctcttcctccgcctccgccgcgggggtctccgccccgacgcgcacacgctcccgcacgtcctcaaggcgctcgcgcgcctcgccccgggatccctccccgttgtcggatccgtgcactcggaggccgtcaaggacggcctcgcctccgcggtggtgtacgtcccgaacgcgctcatggccgcgtactcggcctgtgggcaactggagcgcgccgtgcaggtgttcgacgaaatgccgcgccggaccgtcgtgtcctggaacaccgcgctcaccgcctgcgcgggcaacggccaccacgagctgtgcgtcgagctgttcgcggagatgctagaggctggttccgtgccggacctgaccacgttcgtggtcatgctgtccgccgcggccgagctgggcaacctggcgctcggcaagtgggcgcatggacaggttgtttcccggaggctggacatgacgcttcagcttgggacggcggcagtgaacatgtactccaagtgtggcgcggtgagttatgccctgcgcttgttcgagaggatgcccgcgaggaatgtctggacatggactgccatgatcgtagggtttgcgcagaatggtttggctcaggaagcgctggagctgtttgacaggatgaaactctcaaagatcatacccaattatgtcacatttcttggtctgctttgtgcatgtagccatgctggcctggttgatgaggggcgccggttcttccacgaaatgcagcatgtttatggtatcgtgccgatgatgacgcactacagcgccatggttgatgtcctgggccgcaacggtcttctccaggaagcttatgactttgttgtaggaatgccagtcgaggctgacccagttgtgtggaggacattattggcagcctgccagctgcatagctccaaggactgtattgagatcattgacaaggtgcagggcaaactgctggagctagagccccggagaagtgggaactacgtcatggtttcaaacatctactgcgaaattggatcatgggacgaggcagcgaaggcaaggagggtgatgagggaaggagggatgaagaaggttgcgggagagagttgtgttgaggtgggaggacgggtgcatcggttcgtcttcggggatgattcttgccctgaatttcatggggcttgtaggattctccatgaattgaatctcaacatgagaaaatgtgaacctattgacccaatcttatttactgatgatgctgactag
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| Protein seq | MAALHLHALIAGGGAATTVPHLRQIHAHLLTSGRLPSLGPVLLRRLISLPNPHLHLAHRLLLSLPSPSLDLFNLLLPPLASSPDPSTAAALFLRLRRGGLRPDAHTLPHVLKALARLAPGSLPVVGSVHSEAVKDGLASAVVYVPNALMAAYSACGQLERAVQVFDEMPRRTVVSWNTALTACAGNGHHELCVELFAEMLEAGSVPDLTTFVVMLSAAAELGNLALGKWAHGQVVSRRLDMTLQLGTAAVNMYSKCGAVSYALRLFERMPARNVWTWTAMIVGFAQNGLAQEALELFDRMKLSKIIPNYVTFLGLLCACSHAGLVDEGRRFFHEMQHVYGIVPMMTHYSAMVDVLGRNGLLQEAYDFVVGMPVEADPVVWRTLLAACQLHSSKDCIEIIDKVQGKLLELEPRRSGNYVMVSNIYCEIGSWDEAAKARRVMREGGMKKVAGESCVEVGGRVHRFVFGDDSCPEFHGACRILHELNLNMRKCEPIDPILFTDDAD |
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| Function | Pentatricopeptide repeat-containing protein At2g36730 [UniProtKB/Swiss-Prot:Q9ZQA1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0010190 | OsLima_09g0010190.01 | Chr09 | 15240410 | 15241946 | + | NAM | ||
| CDS seq | atggccgctctccacctccacgccctcatcgccggcggcggcgccgccaccaccgtcccccatctccggcagatccacgcccatctcctcacctccggccgcttaccctccctcggccccgtcctcctccgccgcctcatttcgctgcccaatccccacctccacctcgcccaccgtctcctcctctccctcccctccccatccctcgacctcttcaacctcctccttcccccgctcgcctcctcgccggacccctccaccgccgccgccctcttcctccgcctccgccgcgggggtctccgccccgacgcgcacacgctcccgcacgtcctcaaggcgctcgcgcgcctcgccccgggatccctccccgttgtcggatccgtgcactcggaggccgtcaaggacggcctcgcctccgcggtggtgtacgtcccgaacgcgctcatggccgcgtactcggcctgtgggcaactggagcgcgccgtgcaggtgttcgacgaaatgccgcgccggaccgtcgtgtcctggaacaccgcgctcaccgcctgcgcgggcaacggccaccacgagctgtgcgtcgagctgttcgcggagatgctagaggctggttccgtgccggacctgaccacgttcgtggtcatgctgtccgccgcggccgagctgggcaacctggcgctcggcaagtgggcgcatggacaggttgtttcccggaggctggacatgacgcttcagcttgggacggcggcagtgaacatgtactccaagtgtggcgcggtgagttatgccctgcgcttgttcgagaggatgcccgcgaggaatgtctggacatggactgccatgatcgtagggtttgcgcagaatggtttggctcaggaagcgctggagctgtttgacaggatgaaactctcaaagatcatacccaattatgtcacatttcttggtctgctttgtgcatgtagccatgctggcctggttgatgaggggcgccggttcttccacgaaatgcagcatgtttatggtatcgtgccgatgatgacgcactacagcgccatggttgatgtcctgggccgcaacggtcttctccaggaagcttatgactttgttgtaggaatgccagtcgaggctgacccagttgtgtggaggacattattggcagcctgccagctgcatagctccaaggactgtattgagatcattgacaaggtgcagggcaaactgctggagctagagccccggagaagtgggaactacgtcatggtttcaaacatctactgcgaaattggatcatgggacgaggcagcgaaggcaaggagggtgatgagggaaggagggatgaagaaggttgcgggagagagttgtgttgaggtgggaggacgggtgcatcggttcgtcttcggggatgattcttgccctgaatttcatggggcttgtaggattctccatgaattgaatctcaacatgagaaaatgtgaacctattgacccaatcttatttactgatgatgctgactag
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| Protein seq | MAALHLHALIAGGGAATTVPHLRQIHAHLLTSGRLPSLGPVLLRRLISLPNPHLHLAHRLLLSLPSPSLDLFNLLLPPLASSPDPSTAAALFLRLRRGGLRPDAHTLPHVLKALARLAPGSLPVVGSVHSEAVKDGLASAVVYVPNALMAAYSACGQLERAVQVFDEMPRRTVVSWNTALTACAGNGHHELCVELFAEMLEAGSVPDLTTFVVMLSAAAELGNLALGKWAHGQVVSRRLDMTLQLGTAAVNMYSKCGAVSYALRLFERMPARNVWTWTAMIVGFAQNGLAQEALELFDRMKLSKIIPNYVTFLGLLCACSHAGLVDEGRRFFHEMQHVYGIVPMMTHYSAMVDVLGRNGLLQEAYDFVVGMPVEADPVVWRTLLAACQLHSSKDCIEIIDKVQGKLLELEPRRSGNYVMVSNIYCEIGSWDEAAKARRVMREGGMKKVAGESCVEVGGRVHRFVFGDDSCPEFHGACRILHELNLNMRKCEPIDPILFTDDAD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0412900 | RBH | 0.594243 | 0.317088 | 0.387479 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g24640 | RBH | 0.409418 | 0.207737 | 0.097158 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0412900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010120 | RBH | 0.113488 | 1.626867 | 0.555927 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010070 | RBH | 0.0 | 0.0 | 0.242558 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010370 | RBH | 0.261582 | 1.375585 | 0.821120 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010130 | RBH | 0.133528 | 0.074496 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010240 | RBH | 0.0 | 2.239207 | 1.471381 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0247200 | RBH | 0.3512495 | 0.9367465 | 0.298418 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010210 | RBH | 0.060766 | 0.0 | 0.154804 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0233100 | RBH | 0.584706 | 1.0468395 | 3.0809045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016400 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009970 | RBH | 0.118673 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009930 | RBH | 0.0 | 0.0 | 0.317531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009990 | RBH | 0.0 | 0.898685 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010460 | RBH | 0.0 | 0.523617 | 0.419188 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010260 | RBH | 0.309205 | 2.571931 | 0.510681 |
