Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0009830 | OGI:09041960 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:14797503-14798664 | ||||||||
| Gene Symbol | Os-PF1, PF1 | ||||||||||
| DNA seq | ctcatcgataaatcagacttatttttttgtccggcatggcatagaacaattcaacatcatttgataacactaaatgcagccaccaatctagaattaacacaaacgacacgaaagtcaccaacattaccataataatcagcacgcgataacacgaattcaatcacaactctcagcaacggatgatccatccagcacacctaaacctcccaccatccgattaacttacaataagcagcaacccgagccgcgcctccaatcagtacgagacataatctgaagactacgttacaacctaaaggagcttaccatcgtcgccatcgcggcgatgcggagaatcggagctaatcaagcagcggctggctccccgaccggcgcggcgggtctcaccttgggcgggcgcccacggccgcgcttgacaggcggcgcggcctcagccgccgcggcgggagccgaagctgcggcgggagcgccaatggggtcttcctgttcgaccttggccttcttgggcgggcggccgcgcgcgcggggcatgccactggtggccttcgcgaccgcctcggcgagggggtccttgggcttaggcgggcggccacgggggcgcggcgtggaggccgccggcgccgcgggcgcgggcgccggtgcggcggcggcggcggcggcgtccttgggcttgggcggcctgccgcggccgcgcttgggcgggagggacgggtcgtcgccgcggaagtagttgttcttggagaaggcgagctcgccggtctgcttcatgcgggcgaggtgcgctgtgaggagcgacgggtgcgcgggggggaggagcccctcgtacttcccctcgatgtgctgcgagatcgccgtcttgttcgacccgttcctgtcgtccagcgcctcgatcgcggccagtatcatctgcgcgcgcgcccgcaacgcggtgagcttcacctcacaggaaggggaggggaggggagaggggaaagcggttcttacctccgggtaagacggagtggcggcgggcttggggtccgcctcggccgccgccatggtcgacgcgtcctcctcggtcgccatgggagtgaggcgtggtgtgaacagggggagagaaattttcgatttggatccagggaagaagacgactagtactctcctcctcctccaagtagtagat
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| CDS seq | atggcgaccgaggaggacgcgtcgaccatggcggcggccgaggcggaccccaagcccgccgccactccgtcttacccggagatgatactggccgcgatcgaggcgctggacgacaggaacgggtcgaacaagacggcgatctcgcagcacatcgaggggaagtacgaggggctcctcccccccgcgcacccgtcgctcctcacagcgcacctcgcccgcatgaagcagaccggcgagctcgccttctccaagaacaactacttccgcggcgacgacccgtccctcccgcccaagcgcggccgcggcaggccgcccaagcccaaggacgccgccgccgccgccgccgcaccggcgcccgcgcccgcggcgccggcggcctccacgccgcgcccccgtggccgcccgcctaagcccaaggaccccctcgccgaggcggtcgcgaaggccaccagtggcatgccccgcgcgcgcggccgcccgcccaagaaggccaaggtcgaacaggaagaccccattggcgctcccgccgcagcttcggctcccgccgcggcggctgaggccgcgccgcctgtcaagcgcggccgtgggcgcccgcccaaggtgagacccgccgcgccggtcggggagccagccgctgcttga
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| Protein seq | MATEEDASTMAAAEADPKPAATPSYPEMILAAIEALDDRNGSNKTAISQHIEGKYEGLLPPAHPSLLTAHLARMKQTGELAFSKNNYFRGDDPSLPPKRGRGRPPKPKDAAAAAAAPAPAPAAPAASTPRPRGRPPKPKDPLAEAVAKATSGMPRARGRPPKKAKVEQEDPIGAPAAASAPAAAAEAAPPVKRGRGRPPKVRPAAPVGEPAAA |
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| Function | HMG-Y-related protein A [UniProtKB/Swiss-Prot:Q9FYS5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0009830 | OsLima_09g0009830.01 | Chr09 | 14797503 | 14798664 | - | NAM | ||
| CDS seq | atggcgaccgaggaggacgcgtcgaccatggcggcggccgaggcggaccccaagcccgccgccactccgtcttacccggagatgatactggccgcgatcgaggcgctggacgacaggaacgggtcgaacaagacggcgatctcgcagcacatcgaggggaagtacgaggggctcctcccccccgcgcacccgtcgctcctcacagcgcacctcgcccgcatgaagcagaccggcgagctcgccttctccaagaacaactacttccgcggcgacgacccgtccctcccgcccaagcgcggccgcggcaggccgcccaagcccaaggacgccgccgccgccgccgccgcaccggcgcccgcgcccgcggcgccggcggcctccacgccgcgcccccgtggccgcccgcctaagcccaaggaccccctcgccgaggcggtcgcgaaggccaccagtggcatgccccgcgcgcgcggccgcccgcccaagaaggccaaggtcgaacaggaagaccccattggcgctcccgccgcagcttcggctcccgccgcggcggctgaggccgcgccgcctgtcaagcgcggccgtgggcgcccgcccaaggtgagacccgccgcgccggtcggggagccagccgctgcttga
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| Protein seq | MATEEDASTMAAAEADPKPAATPSYPEMILAAIEALDDRNGSNKTAISQHIEGKYEGLLPPAHPSLLTAHLARMKQTGELAFSKNNYFRGDDPSLPPKRGRGRPPKPKDAAAAAAAPAPAPAAPAASTPRPRGRPPKPKDPLAEAVAKATSGMPRARGRPPKKAKVEQEDPIGAPAAASAPAAAAEAAPPVKRGRGRPPKVRPAAPVGEPAAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.229274 | 0.559724 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0402100 | RBH | 5.154758 | 4.882493 | 8.711248 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g23730 | RBH | 3.373574 | 3.174724 | 2.182463 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0402100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009720 | RBH | 3.038492 | 22.682266 | 13.304964 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009670 | RBH | 1.161542 | 7.916467 | 6.733171 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0009930 | RBH | 3.966764 | 6.206253 | 9.897254 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009690 | RBH | 0.917670 | 0.856608 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009870 | RBH | 7.540778 | 38.712959 | 22.574368 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0241000 | RBH | 15.3471145 | 26.8234565 | 34.574093 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009830 | RBH | 1.095715 | 2.521636 | 0.981192 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0226900 | RBH | 14.3789345 | 22.577875 | 44.142746 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016050 | RBH | 0.131168 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009590 | RBH | 0.416164 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009740 | RBH | 0.0 | 21.624144 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009560 | RBH | 1.031747 | 0.0 | 4.166656 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009580 | RBH | 1.531508 | 8.649820 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010080 | RBH | 1.311315 | 12.774638 | 4.664283 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009880 | RBH | 7.605142 | 28.932758 | 10.883899 |
