Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0009200 | OGI:09040090 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:14189600-14191312 | ||||||||
| Gene Symbol | OsFbox477, Os_F0147, OsFbox486, Os_F0355 | ||||||||||
| DNA seq | ctacttcgcgtttttgtatcctacacaatacaatcagttcaagttgaaccatttgtttcttgcatcattgctggctcatatgttggccaatgcggtcagcaaggttgtagccgcaagcgattgcctaggagtttgttcaggcaaattttgtgagcctgaattgctgctgaatgagttaaaaaaaaatgccgcctccaaTttttttgggtctaaaattctgtattgatgttgaagatgaggtttaagctgctacgcttgacttaataaaaaagagtcgtagatacatgcatatgctcccttcagattAaaaaatatatcaaacTtaaaaaaatttgactatAaatatattctaaaatatttgctttagaaaattgagatcatttgtatagattgatcttaaaatacatttcaataaaatcataatatcatatatacacacatatgtgtgtgtgtttgtgtggcaaaagttataacttttggaaaccgggtacttatccaaaacaacgttTAtttttaatctagagggagcactctataaattggtacgtagatcaattgatactaatgaaggtcaacccatacaccatagtacaccctctcagctccccagTTttctctagtttcttgctgtcccaatttgtacgaccacacatctgcacatttttcgcagcatgtgccattgctgtgatcccccatagtggaatacttTGtgttggacgatgatgattttggtacaaaggctaattcgccatcgcgagagataatgttgacatggatggtctcaggccatttgtagaacatcgggaggaacaccctgttttgcatccacttgaacttggtcttcttcaccatggatgtgagtgtacccgtgaacagcgttcgcccctgcagactctccacctgctcccactccatcctctccttgttaagcacgatgacatgtaccggtgtcccacgtcgaccaaagaggacggccataagctcgccctgatcagactcaaccaggtaactgtcgtggtactgttcgaacccgaagctcatgggcttatcgagaatcttaaatccttccgcgtgcttgcatgggtcatacacggccaacctcccatgttcgccgagaaggtatatcgaaccgcgatggaaaaccgggttggtgacgggcgatggccttagccgtggcccattagcgtcatactccgtcagtgtccagtcctcccactcgccctcgtcgccgtcgccgatctggctggtgtagccaaccgcgagcgggagaaccgcatcgatcccgaacatcctccgcgcgccgctgccgccgtagacgacgaagtcgaaatggtccgcgtacgccgcatgcggagcctgacgaacagcgccggtcacgaggtggacatcgagcgctagcctcggcttctcgagcgcgaggtgccgcccggtggcgcaacagatcttggcatcacgggcgacgtcgtcgtcgcagctggccaccaccacctcgaaggtgtagtggtagtaggggctgtagtagcggaggttcgcggcgccgacgcgggcggtgctgagcaggagcggggtgatccacgccgggtagaagggcggcacggcggagcgccagtgccggcacgacagcgcgaagctcgggtggctcgaccaccgcagctgctccaggaccgcggcgaggacgtcgagcgggagggacgaccagtcccgttcctccat
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| CDS seq | atggaggaacgggactggtcgtccctcccgctcgacgtcctcgccgcggtcctggagcagctgcggtggtcgagccacccgagcttcgcgctgtcgtgccggcactggcgctccgccgtgccgcccttctacccggcgtggatcaccccgctcctgctcagcaccgcccgcgtcggcgccgcgaacctccgctactacagcccctactaccactacaccttcgaggtggtggtggccagctgcgacgacgacgtcgcccgtgatgccaagatctgttgcgccaccgggcggcacctcgcgctcgagaagccgaggctagcgctcgatgtccacctcgtgaccggcgctgttcgtcaggctccgcatgcggcgtacgcggaccatttcgacttcgtcgtctacggcggcagcggcgcgcggaggatgttcgggatcgatgcggttctcccgctcgcggttggctacaccagccagatcggcgacggcgacgagggcgagtgggaggactggacactgacggagtatgacgctaatgggccacggctaaggccatcgcccgtcaccaacccggttttccatcgcggttcgatataccttctcggcgaacatgggaggttggccgtgtatgacccatgcaagcacgcggaaggatttaagattctcgataagcccatgagcttcgggttcgaacagtaccacgacagttacctggttgagtctgatcagggcgagcttatggccgtcctctttggtcgacgtgggacaccggtacatgtcatcgtgcttaacaaggagaggatggagtgggagcaggtggagagtctgcaggggcgaacgctgttcacgggtacactcacatccatggtgaagaagaccaagttcaagtggatgcaaaacagggtgttcctcccgatgttctacaaatggcctgagaccatccatgtcaacattatctctcgcgatggcgaattagcctttgtaccaaaatcatcatcgtccaacaCAaagtattccactatgggggatcacagcaatggcacatgctgcgaaaaatgtgcagatgtgtggtcgtacaaattgggacagcaagaaactagagaaAActggggagctgagagggtgtactatggatacaaaaacgcgaagtag
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| Protein seq | MEERDWSSLPLDVLAAVLEQLRWSSHPSFALSCRHWRSAVPPFYPAWITPLLLSTARVGAANLRYYSPYYHYTFEVVVASCDDDVARDAKICCATGRHLALEKPRLALDVHLVTGAVRQAPHAAYADHFDFVVYGGSGARRMFGIDAVLPLAVGYTSQIGDGDEGEWEDWTLTEYDANGPRLRPSPVTNPVFHRGSIYLLGEHGRLAVYDPCKHAEGFKILDKPMSFGFEQYHDSYLVESDQGELMAVLFGRRGTPVHVIVLNKERMEWEQVESLQGRTLFTGTLTSMVKKTKFKWMQNRVFLPMFYKWPETIHVNIISRDGELAFVPKSSSSNTKYSTMGDHSNGTCCEKCADVWSYKLGQQETRENWGAERVYYGYKNAK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0009200 | OsLima_09g0009200.01 | Chr09 | 14189600 | 14191312 | - | NAM | ||
| CDS seq | atggaggaacgggactggtcgtccctcccgctcgacgtcctcgccgcggtcctggagcagctgcggtggtcgagccacccgagcttcgcgctgtcgtgccggcactggcgctccgccgtgccgcccttctacccggcgtggatcaccccgctcctgctcagcaccgcccgcgtcggcgccgcgaacctccgctactacagcccctactaccactacaccttcgaggtggtggtggccagctgcgacgacgacgtcgcccgtgatgccaagatctgttgcgccaccgggcggcacctcgcgctcgagaagccgaggctagcgctcgatgtccacctcgtgaccggcgctgttcgtcaggctccgcatgcggcgtacgcggaccatttcgacttcgtcgtctacggcggcagcggcgcgcggaggatgttcgggatcgatgcggttctcccgctcgcggttggctacaccagccagatcggcgacggcgacgagggcgagtgggaggactggacactgacggagtatgacgctaatgggccacggctaaggccatcgcccgtcaccaacccggttttccatcgcggttcgatataccttctcggcgaacatgggaggttggccgtgtatgacccatgcaagcacgcggaaggatttaagattctcgataagcccatgagcttcgggttcgaacagtaccacgacagttacctggttgagtctgatcagggcgagcttatggccgtcctctttggtcgacgtgggacaccggtacatgtcatcgtgcttaacaaggagaggatggagtgggagcaggtggagagtctgcaggggcgaacgctgttcacgggtacactcacatccatggtgaagaagaccaagttcaagtggatgcaaaacagggtgttcctcccgatgttctacaaatggcctgagaccatccatgtcaacattatctctcgcgatggcgaattagcctttgtaccaaaatcatcatcgtccaacaCAaagtattccactatgggggatcacagcaatggcacatgctgcgaaaaatgtgcagatgtgtggtcgtacaaattgggacagcaagaaactagagaaAActggggagctgagagggtgtactatggatacaaaaacgcgaagtag
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| Protein seq | MEERDWSSLPLDVLAAVLEQLRWSSHPSFALSCRHWRSAVPPFYPAWITPLLLSTARVGAANLRYYSPYYHYTFEVVVASCDDDVARDAKICCATGRHLALEKPRLALDVHLVTGAVRQAPHAAYADHFDFVVYGGSGARRMFGIDAVLPLAVGYTSQIGDGDEGEWEDWTLTEYDANGPRLRPSPVTNPVFHRGSIYLLGEHGRLAVYDPCKHAEGFKILDKPMSFGFEQYHDSYLVESDQGELMAVLFGRRGTPVHVIVLNKERMEWEQVESLQGRTLFTGTLTSMVKKTKFKWMQNRVFLPMFYKWPETIHVNIISRDGELAFVPKSSSSNTKYSTMGDHSNGTCCEKCADVWSYKLGQQETRENWGAERVYYGYKNAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g22460 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009110 | RBH | 0.000000 | 2.283839 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009030 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0009310 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009050 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009250 | RBH | 0.000000 | 0.000000 | 0.984122 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0230200 | RBH | 0.0129645 | 0.145529 | 0.024171 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009210 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0214700 | RBH | 0.000298 | 0.212216 | 0.0221575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0009250 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008990 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009120 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008940 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008960 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009490 | RBH | 0.000000 | 0.000000 | 0.246115 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009270 | RBH | 0.000000 | 0.000000 | 0.000000 |
