Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0007420 | OGI:09034940 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:12289116-12293077 | ||||||||
| Gene Symbol | RLCK268, OsRLCK268 | ||||||||||
| DNA seq | atgggggtggcgccgccggagctggggcagttcgacgggtgggagagctccggggaggaggagagggagaggtgggggtggtgccgccgcagccggagccgcagcgggagccgcagcggcagcggcagcggaagcagtaggcggcggctgccacggaagggcagcggcggcggtggtggcggggaggacgccacggtggccaccgggtgctgcatccggctgtggccgatggggagctgcccgccgccgccgcggtccaaggtggacacctccaccagcagcgccagcacgcacggcggtaacgtctctttcgtcctttctaaagatgagctaacctgcaacgacttggaatttggaatctgttatgtaaatggattttggccataaatatgtctggatatttagatgtgatgtaaccacatggccttgattagcgctgaggttatagtaggttagaatgtaaatgtcgagtcgtgtgcataggcatatagttttctagagagctgagtgcagctatgtgtttgtagttagaatcctcagcgctttgcgcgcgtccctgttttgggcattgaatgtacaaattgactagtaattattatgacaagcgtgtaggacacgtaattattggcaaacagtcggcaaatcatagagatcatccacatcatatttcaagctgagctgtagttcttattactacctattaccgtttaaattggaagatggatattggatgagcatatgggaccagtggcatgagtgtttttgggggtttctattctatttttagtatgtcatgtggtttttcttgctccttgcatgccacacttaatctcgtagcaaattaattagaacggcacacataaatgagcaccattggtttctccagtcaggaatggttgttgatatgttaggatcagccacctgactttgatggtgttttgacagcagatgtggtgtttggaatcatgagtcatcattcatcaaggctgcttggctgctttaagcattcattgatggacatgaatgaatggtacatgagaaagtcatattttcttgggatccataccccaaaagaccaaaactaaactttacactccactgtgtccttcagctgtatcccagaatttactgtacagtttgccactttcattacttgtgTttatctgaattagtgttgtggggtttatttattgttgaggagatagtctttcgtttctcattagtatgccatattaaaactgttatccatttcatggaacagcagaaaagtcaaccgaaaatggtagcaggaaccatccagttgtatcagtagtctcaggctcaacaactactagtaatgctgagagcagttcatcagcatctaaagctggagaggaaataaaagttgcctcacagttgcgcaagtttgcattcaatgatctaaaatgtgccacccggaacttcaggcctgagagtatccttggagaagggggttttggatgtgtttttaaagggtggattgaagagaatggaactgcacctgtgaaacctggtacgggccttacagttgctgtcaaaacactcaatcatgatgggcttcaagggcacaaagaatgggtggtatgtgctttgttattcttattgttcaatttgcttttgttccgttcatgtttagtactgttcccattagaacccccaatgactctgacatttgttctgcttcatttcaggcagaggttgatttccttggtaaccttcaccatcccaatttggtgaggctgattggatattgtgttgaagatgaccaaagattgctggtgtatgaattcatgcctcgtggaagtttagataaccatctgttcagaagtacgtgtctgaccagtttctcaagccattgaaacttcaatttttatacaatgcctgtgctttaatgaatgaatttatcattaatcatatttgagtagctcttctgaaGTgtttggtcattgtatcttgctgctggaaaaaatattaaatagatagaaatattgaatcttatatgaattatgattcatctatagggtctcttcctctcccttggtccatcagaatgaaggttgctcttggagcagcaaagggtcttgctttccttcatgaagaagcagaaagaccagttatttaccgtgattttaaaacatctaatatactgctagatgctgtaagttttaagtccttgaattggattacgtattgcacaccacatgattcacatcttgtaattttgtatattatgctactcttgcaggattacaatgcaaaactctcagattttgggcttgccaaagatggccctgtaggtgacaaaactcatgtgtctactcgagtaatgggaacatatggttatgcagctccggagtatgttatgacaggtaagtgcttcatcagtcatcactcggacaaaacataactggtctgaagatagtctcacttccactttgttttatctctcctatgtatgccaaaaacaagtcagatatggcgatttactattacagttcttgcatcaacgatcagcatatgcaccctatggtctttcagtctctcttatcggcgacacttcaatctatggaatggaaatgattataagaagaattatcatgatatagtagattagtggttaatgtacaaaatattgtgaatgtaatatacaaaatattttagttagttcctcggatataaaactagaagtaatgatatgtatacaatgtatcaattaatttctttggtgatgattaatgtaattaatgtcagctctatttatgaactatattaagcctttacacttgatcttgggaaaataatgtagaagggaaataccataatatttaattacttgtcattacaattaatagtagttgcacaagtgtgtcttgtttgattagaaatcccagcactgttgtgaaaacacatttgcaggggcaaaacaaatatgtctaagagtgcaactgtagagttaagtgatgttgtccatatcgcagatgtttgtcattcatttgatttccaggaaaatgtattattgcctgcatatcatcaacaatcttcttaatattaggctaatgctgggcactggatttttcaatgattatttgtgcaaatgaagttcaaacacagatttgttgcctttggtatttatgcgattttcattatggcacttgttataattttgttgtattttttttccacttttcaggccatttgacatcaaagagtgatgtctatagttttggtgtggtgctacttgagatgatgtcagggcgcaggtcaatggacaagaaccgcccaaatggtgagcacaaccttgttgagtgggcacgccccctcctaggagaaaggcagcgcttctacaagctaattgaCcctcgtttggagggtaacttctcggtcaaaggtgcccagaaggcagcacagttagcacgtgcctgtctcaaccgggacccgaaagcccggccactgatgagccaagtggtagaggttctcaagccactgctcaacctcaaggacatggctagctcctcgtacttctatcagacaatgcaagctgagagaatggcgcactcgagcagcatgaatggtaggagccatgcccttaaggtgcagggttcatttgctcggaacgggcagcaaccgatgaggagcctgtccgatggcccccgtgcttccccgttccgctactcacccaagccgaacgtgaaataactagaggcgcataatcctggtctggttggtggaacttggttggggctgagtggcttggctgaacattgttgtgcaatctgaattgatctttcctgtagattgacatgtgaaaatggatataggtgaaaaggagctgtaggtaccagatttcccttgtggatgtttgcactgaggttttaactggatgctgatagacccttttctatatatttttcctccaaagtaagctagctttggttaatttaatt
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| CDS seq | atgggggtggcgccgccggagctggggcagttcgacgggtgggagagctccggggaggaggagagggagaggtgggggtggtgccgccgcagccggagccgcagcgggagccgcagcggcagcggcagcggaagcagtaggcggcggctgccacggaagggcagcggcggcggtggtggcggggaggacgccacggtggccaccgggtgctgcatccggctgtggccgatggggagctgcccgccgccgccgcggtccaaggtggacacctccaccagcagcgccagcacgcacggcgcagaaaagtcaaccgaaaatggtagcaggaaccatccagttgtatcagtagtctcaggctcaacaactactagtaatgctgagagcagttcatcagcatctaaagctggagaggaaataaaagttgcctcacagttgcgcaagtttgcattcaatgatctaaaatgtgccacccggaacttcaggcctgagagtatccttggagaagggggttttggatgtgtttttaaagggtggattgaagagaatggaactgcacctgtgaaacctggtacgggccttacagttgctgtcaaaacactcaatcatgatgggcttcaagggcacaaagaatgggtggcagaggttgatttccttggtaaccttcaccatcccaatttggtgaggctgattggatattgtgttgaagatgaccaaagattgctggtgtatgaattcatgcctcgtggaagtttagataaccatctgttcagaaggtctcttcctctcccttggtccatcagaatgaaggttgctcttggagcagcaaagggtcttgctttccttcatgaagaagcagaaagaccagttatttaccgtgattttaaaacatctaatatactgctagatgctgattacaatgcaaaactctcagattttgggcttgccaaagatggccctgtaggtgacaaaactcatgtgtctactcgagtaatgggaacatatggttatgcagctccggagtatgttatgacaggccatttgacatcaaagagtgatgtctatagttttggtgtggtgctacttgagatgatgtcagggcgcaggtcaatggacaagaaccgcccaaatggtgagcacaaccttgttgagtgggcacgccccctcctaggagaaaggcagcgcttctacaagctaattgaCcctcgtttggagggtaacttctcggtcaaaggtgcccagaaggcagcacagttagcacgtgcctgtctcaaccgggacccgaaagcccggccactgatgagccaagtggtagaggttctcaagccactgctcaacctcaaggacatggctagctcctcgtacttctatcagacaatgcaagctgagagaatggcgcactcgagcagcatgaatggtaggagccatgcccttaaggtgcagggttcatttgctcggaacgggcagcaaccgatgaggagcctgtccgatggcccccgtgcttccccgttccgctactcacccaagccgaacgtgaaataa
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| Protein seq | MGVAPPELGQFDGWESSGEEERERWGWCRRSRSRSGSRSGSGSGSSRRRLPRKGSGGGGGGEDATVATGCCIRLWPMGSCPPPPRSKVDTSTSSASTHGAEKSTENGSRNHPVVSVVSGSTTTSNAESSSSASKAGEEIKVASQLRKFAFNDLKCATRNFRPESILGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWVAEVDFLGNLHHPNLVRLIGYCVEDDQRLLVYEFMPRGSLDNHLFRRSLPLPWSIRMKVALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPVGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMMSGRRSMDKNRPNGEHNLVEWARPLLGERQRFYKLIDPRLEGNFSVKGAQKAAQLARACLNRDPKARPLMSQVVEVLKPLLNLKDMASSSYFYQTMQAERMAHSSSMNGRSHALKVQGSFARNGQQPMRSLSDGPRASPFRYSPKPNVK |
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| Function | Probable serine/threonine-protein kinase PIX7 [UniProtKB/Swiss-Prot:Q9LFP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0007420 | OsLima_09g0007420.01 | Chr09 | 12289116 | 12293077 | + | NAM | ||
| CDS seq | atgggggtggcgccgccggagctggggcagttcgacgggtgggagagctccggggaggaggagagggagaggtgggggtggtgccgccgcagccggagccgcagcgggagccgcagcggcagcggcagcggaagcagtaggcggcggctgccacggaagggcagcggcggcggtggtggcggggaggacgccacggtggccaccgggtgctgcatccggctgtggccgatggggagctgcccgccgccgccgcggtccaaggtggacacctccaccagcagcgccagcacgcacggcgcagaaaagtcaaccgaaaatggtagcaggaaccatccagttgtatcagtagtctcaggctcaacaactactagtaatgctgagagcagttcatcagcatctaaagctggagaggaaataaaagttgcctcacagttgcgcaagtttgcattcaatgatctaaaatgtgccacccggaacttcaggcctgagagtatccttggagaagggggttttggatgtgtttttaaagggtggattgaagagaatggaactgcacctgtgaaacctggtacgggccttacagttgctgtcaaaacactcaatcatgatgggcttcaagggcacaaagaatgggtggcagaggttgatttccttggtaaccttcaccatcccaatttggtgaggctgattggatattgtgttgaagatgaccaaagattgctggtgtatgaattcatgcctcgtggaagtttagataaccatctgttcagaaggtctcttcctctcccttggtccatcagaatgaaggttgctcttggagcagcaaagggtcttgctttccttcatgaagaagcagaaagaccagttatttaccgtgattttaaaacatctaatatactgctagatgctgattacaatgcaaaactctcagattttgggcttgccaaagatggccctgtaggtgacaaaactcatgtgtctactcgagtaatgggaacatatggttatgcagctccggagtatgttatgacaggccatttgacatcaaagagtgatgtctatagttttggtgtggtgctacttgagatgatgtcagggcgcaggtcaatggacaagaaccgcccaaatggtgagcacaaccttgttgagtgggcacgccccctcctaggagaaaggcagcgcttctacaagctaattgaCcctcgtttggagggtaacttctcggtcaaaggtgcccagaaggcagcacagttagcacgtgcctgtctcaaccgggacccgaaagcccggccactgatgagccaagtggtagaggttctcaagccactgctcaacctcaaggacatggctagctcctcgtacttctatcagacaatgcaagctgagagaatggcgcactcgagcagcatgaatggtaggagccatgcccttaaggtgcagggttcatttgctcggaacgggcagcaaccgatgaggagcctgtccgatggcccccgtgcttccccgttccgctactcacccaagccgaacgtgaaataa
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| Protein seq | MGVAPPELGQFDGWESSGEEERERWGWCRRSRSRSGSRSGSGSGSSRRRLPRKGSGGGGGGEDATVATGCCIRLWPMGSCPPPPRSKVDTSTSSASTHGAEKSTENGSRNHPVVSVVSGSTTTSNAESSSSASKAGEEIKVASQLRKFAFNDLKCATRNFRPESILGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWVAEVDFLGNLHHPNLVRLIGYCVEDDQRLLVYEFMPRGSLDNHLFRRSLPLPWSIRMKVALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPVGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMMSGRRSMDKNRPNGEHNLVEWARPLLGERQRFYKLIDPRLEGNFSVKGAQKAAQLARACLNRDPKARPLMSQVVEVLKPLLNLKDMASSSYFYQTMQAERMAHSSSMNGRSHALKVQGSFARNGQQPMRSLSDGPRASPFRYSPKPNVK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.069386 | 0.370376 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0361100 | RBH | 2.755226 | 2.592065 | 6.849056 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19700 | RBH | 1.398789 | 1.509069 | 1.503698 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0361100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007340 | RBH | 0.446895 | 11.078451 | 5.651223 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007320 | RBH | 0.138019 | 5.793861 | 1.577922 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007560 | RBH | 0.733028 | 11.814191 | 11.183753 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007370 | RBH | 0.067458 | 0.379063 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007500 | RBH | 2.846658 | 13.936994 | 17.642069 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0203200 | RBH | 3.3108575 | 19.3317015 | 21.8470715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007460 | RBH | 0.233895 | 0.958508 | 0.646883 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0182400 | RBH | 4.9616055 | 24.149354 | 16.180035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015640 | SBH | 0.0 | 0.059551 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007240 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007150 | RBH | 0.970623 | 21.855242 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007160 | RBH | 1.074522 | 0.0 | 1.324577 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007240 | RBH | 0.076418 | 9.162874 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007760 | RBH | 0.521246 | 6.007640 | 2.718784 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007560 | RBH | 0.560828 | 16.238190 | 6.580587 |
