Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0006700 | OGI:09032130 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:11264516-11266891 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acaaaaattagcatccactattttatttcatagcataagttaactctgtcattacataaatacgcatctatatcagacagttctcagaaactcaagtgtcaaacatcataccatattaacaagcacaataacgatgataatgttattgcattactaagatccctgctttaacagattttctggcaaaataactttcaagattggagcatcagaggagatctccagtgtatctccatgctgaattgaatgcattacatgtgaaccatcaaaataaacagcgccttcctcattgtaccaaacgacaagtatgtgttgaccttgcttaactaacccatgcagcagtggcttgtcagcatcccttggagaaatgggctcccttatcatatactgaagctcatggcttgatattggcatcacgaatcctcctgccgatagcatagcagcagttgatccagcaggcgttgcgaccctgagaccacttgacctgcaattaattaaatgcgagctctctccagtgttgcttctcttcctgagatggcaataacatcagaattgattaaaaaaattaaaaaattaacgcaaagaattgaaggcaatacctaaatgagaatcgtgatacacttgctggacaggggtgtgagaccaatatatcattcagagcataagttggtagctgaagtccatttagtttcactgagatccttgacaactctgaaggttgcctactaccatcaagggttgcatcaagtatctgggaatcgtcatgttcaatgtatcattaattaatgtttagattagtacgaattcctgtaatagaagaattggattgctccaaaaaaaattgcaatggaaagttacctgctcaaagtttgcagccgtagctgcacaaagatgtcctgtgcttctccttgcatcaaattcatcagttaattcatcaacctgcaaaggaataatctatatataaacctaaccaagcatacaggtaagcatcagtctgcttggaagcatgccaaaagcaacttgacaaacatggatcatatggttcttgacaataatctgaagaactaacctcatcaggacaagtagggtctgaattaacacctaaaacgggaattgagctattcaaaaaatggctagcccgtagaagagtgccatcaccaccaacagaaatcacaagatccacatcatgtattggattagacatatcatttcgctgcactgaaatccagtcaatggatttacgctgcagtacgcttttgcagagattgattgtttccttgtgaactctgcacctatcatccagataattcaagacctgtaagaatattgcaaaatgatcatgagaggcatgagtaccgcaaaattcatatcataataactagttgtgcaagcaagaaaagcagggtagagaactcctacactcaactagatatgcaatacctcccagccacattgtctactattcagttcacaataaggaaagccacacccttgattatacttaattagaattactaaacaaccagaagtagtccctttactgactaacatcaaaatagacaagaccaataagacttcctggttccacctgtatcatatcaggaacactgggcagagacaataaccatagttcagacacacgcatttcaacaaacaaatggtgtgcttcatgatagcaccacgaaagttcaaaagaagtgcgattaagatgaagatagccacccacagaagaaggaacaaaaccagaactcccccatcttagactatttctgctgctccatcacctcaaagaacatgcaacatggtccatttgaaccaaaacgatgacaaaagaagaagagaaaaagaaaatcaaacggacacctcttgactctttcagttttgatcagaaacgcgcgcacccaccatggatcagagcaaagcacgattcctgaaaacaacaagcgttgcatccagccattcatttcgctaacaccgtcacgggagctcgcatttcctgcgcgacgaactcctctaccgtttaccccgccggagcagtgagaacatggggggaggcaccccacccggtactcgaaacggagagagagagagagagagagagagagagagagagagagctgtgaccttgggattggatacacgcagcggcggcggcgggggcggaggcgaggaggcggcggcggcgagcgggcggggagggtagacgtcgaagggcttgacgaagaggagcacgcggcggagcgccattggagcccctcgtctcggcttccctgccttcttgtacccgcggttcgtcgcgttGGCggcggcggcggcggcggcggcgccccccggcgtggcgtctgcgccgtcgggttgtgcggtctgtttctgacg
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| CDS seq | atggcgctccgccgcgtgctcctcttcgtcaagcccttcgacgtctaccctccccgcccgctcgccgccgccgcctcctcgcctccgcccccgccgccgccgctgcgtgtatccaatcccaaggtcttgaattatctggatgataggtgcagagttcacaaggaaacaatcaatctctgcaaaagcgtactgcagcgtaaatccattgactggatttcagtgcagcgaaatgatatgtctaatccaatacatgatgtggatcttgtgatttctgttggtggtgatggcactcttctacgggctagccattttttgaatagctcaattcccgttttaggtgttaattcagaccctacttgtcctgatgaggttgatgaattaactgatgaatttgatgcaaggagaagcacaggacatctttgtgcagctacggctgcaaactttgagcagatacttgatgcaacccttgatggtagtaggcaaccttcagagttgtcaaggatctcagtgaaactaaatggacttcagctaccaacttatgctctgaatgatatattggtctcacacccctgtccagcaagtgtatcacgattctcatttaggaagagaagcaacactggagagagctcgcatttaattaattgcaggtcaagtggtctcagggtcgcaacgcctgctggatcaactgctgctatgctatcggcaggaggattcgtgatgccaatatcaagccatgagcttcagtatatgataagggagcccatttctccaagggatgctgacaagccactgctgcatgggttagttaagcaaggtcaacacatacttgtcgtttggtacaatgaggaaggcgctgtttattttgatggttcacatgtaatgcattcaattcagcatggagatacactggagatctcctctgatgctccaatcttgaaagttattttgccagaaaatctgttaaagcagggatcttag
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| Protein seq | MALRRVLLFVKPFDVYPPRPLAAAASSPPPPPPPLRVSNPKVLNYLDDRCRVHKETINLCKSVLQRKSIDWISVQRNDMSNPIHDVDLVISVGGDGTLLRASHFLNSSIPVLGVNSDPTCPDEVDELTDEFDARRSTGHLCAATAANFEQILDATLDGSRQPSELSRISVKLNGLQLPTYALNDILVSHPCPASVSRFSFRKRSNTGESSHLINCRSSGLRVATPAGSTAAMLSAGGFVMPISSHELQYMIREPISPRDADKPLLHGLVKQGQHILVVWYNEEGAVYFDGSHVMHSIQHGDTLEISSDAPILKVILPENLLKQGS |
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| Function | Probable NADH kinase [UniProtKB/Swiss-Prot:Q6EQG2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0006700 | OsLima_09g0006700.01 | Chr09 | 11264516 | 11266891 | - | NAM | ||
| CDS seq | atggcgctccgccgcgtgctcctcttcgtcaagcccttcgacgtctaccctccccgcccgctcgccgccgccgcctcctcgcctccgcccccgccgccgccgctgcgtgtatccaatcccaaggtcttgaattatctggatgataggtgcagagttcacaaggaaacaatcaatctctgcaaaagcgtactgcagcgtaaatccattgactggatttcagtgcagcgaaatgatatgtctaatccaatacatgatgtggatcttgtgatttctgttggtggtgatggcactcttctacgggctagccattttttgaatagctcaattcccgttttaggtgttaattcagaccctacttgtcctgatgaggttgatgaattaactgatgaatttgatgcaaggagaagcacaggacatctttgtgcagctacggctgcaaactttgagcagatacttgatgcaacccttgatggtagtaggcaaccttcagagttgtcaaggatctcagtgaaactaaatggacttcagctaccaacttatgctctgaatgatatattggtctcacacccctgtccagcaagtgtatcacgattctcatttaggaagagaagcaacactggagagagctcgcatttaattaattgcaggtcaagtggtctcagggtcgcaacgcctgctggatcaactgctgctatgctatcggcaggaggattcgtgatgccaatatcaagccatgagcttcagtatatgataagggagcccatttctccaagggatgctgacaagccactgctgcatgggttagttaagcaaggtcaacacatacttgtcgtttggtacaatgaggaaggcgctgtttattttgatggttcacatgtaatgcattcaattcagcatggagatacactggagatctcctctgatgctccaatcttgaaagttattttgccagaaaatctgttaaagcagggatcttag
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| Protein seq | MALRRVLLFVKPFDVYPPRPLAAAASSPPPPPPPLRVSNPKVLNYLDDRCRVHKETINLCKSVLQRKSIDWISVQRNDMSNPIHDVDLVISVGGDGTLLRASHFLNSSIPVLGVNSDPTCPDEVDELTDEFDARRSTGHLCAATAANFEQILDATLDGSRQPSELSRISVKLNGLQLPTYALNDILVSHPCPASVSRFSFRKRSNTGESSHLINCRSSGLRVATPAGSTAAMLSAGGFVMPISSHELQYMIREPISPRDADKPLLHGLVKQGQHILVVWYNEEGAVYFDGSHVMHSIQHGDTLEISSDAPILKVILPENLLKQGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.065750 | 0.168603 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0345700 | RBH | 0.386915 | 1.152272 | 0.208234 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g17680 | RBH | 0.261652 | 0.774999 | 0.053604 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0345700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006630 | RBH | 0.494318 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006640 | RBH | 0.000000 | 0.663583 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006850 | RBH | 0.0 | 0.0 | 1.616878 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006720 | RBH | 0.046428 | 0.076805 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006820 | RBH | 1.656385 | 2.677602 | 5.980694 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0189000 | RBH | 0.812915 | 1.7263095 | 1.461545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006850 | RBH | 0.000000 | 0.000000 | 0.195627 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0165100 | RBH | 0.8195285 | 1.7069935 | 3.412337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006550 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006550 | RBH | 3.025991 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006460 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006530 | RBH | 0.261467 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007030 | RBH | 0.000000 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006890 | RBH | 0.0 | 0.0 | 0.000000 |
