Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0006480 | OGI:09031450 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:11023634-11025461 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaaacgactcttccacattcaggtacaatattatttaatagctcttttccttaatcgttattgctataaacAaagggcaacaagctggttaattgagcccggtccacaCTCcAcacacggtttgggcgtttggctagttctaagttgcacgaacgtaactgtcggcagtttccttccttccaggcttccacaattcgacctccagtttagagatagaggctcaacataaccttatctaccagtcgttcaccaagccaataaaaagacaatgcaaggccgtcgcagtgtttagctccaacatcgatctatctcttctagctaatcccccaccattttttctctttgcctgcttctctgtgtcgacgcgagcttctatctgtcctactcctagctggttctggggttcagctccactcttcaacaaagagcaaactcccacatggacacctccgactctatcggtgtcgtgttaatagtccgtttccttgtgttgccggttgtgggcttacttctagctctgttcttgaggtcgagggccaagaggatcaattcctctacacaaattacgcataccGTCGgTCGGCGAGTCGTCAAACATCGAGGGTGGCAACGCCGAGTTGGAGATCGCGGTGGCCGCGGCCGGGCCGAGACGGTACAGCTACGCCGAGCTCGCCGCCGCGACGCGTGACTTCGCGGAGGAGGAAAAGCTCGGACGAGGAGGCTTTGGCAGCGTTTACCGAGGCCGCCTCCCCGTCGTCCCGGGTGGCGACGTCGACGGCGGTGGCGGCCAGCAGGTGGCCATCAAGTTCTTGTCGGAGTCGTCGTCGCAGGGAAGGAAGGAGTTCGAGGCCGAGGTGAGGATCATTACCCGTCTGAGGCATCGCAATCTTGTGCAGTTGCTAGGCTGGTGCGATTGCCCCAGGGGTCTCATGCTCGTCTACGAACTTGTGCCGGGAGGGAGCCTAGAGAAGCATATTTATGACAACCAAAGGCTATTAACATGGTCAGAGAGGTACACTGATTAAGTAAATTAAACTGAAATTAACTACTTGTCATGTTTAAGCATGGAACATGTAATTTTGGTGAAATTTAGTTGAATATCAACTGATGACACTCTCCCTCTCTATTTTTGTTGtttgtttattaataggtacaagatcattataggattgggatcagcgttgcgttaccttcaccaagaatgggagcaatgcgtcctgcacggtgacatcaagccaagcaacatcatggttgactcgtcgtacaacaccaagcttggtgactttgggcttgccaggctcgtcaaccacggcgaacgatggaagaccacgacggctgtgcagggcaccgcggggtacatcgacccggagttcataaatacgcaacgaccgagcaccgagtccgacgtctacagcttcggcatggtcctcctcgagattgtttgtgccaagccaccggtggtcttgcacgaggacgagccgagcttcgtgctgctgaggtgggtgtggagcctgtacagccagaacgcgatcctcgatgccgtggacgaacggctgcgtggtgtctttcgcgacgaacggcagatggagcgtgtgctggtcgtcgggctgtggtgcgcgcaccctgacctgagcgagcgcccatccatcgcccgcgccatgaacgtcctgcagtctgacgacacgaggttgccggatctctcgccgcagatgtacaagtccaaggtctcaccgcctccgagagaagtcgccatGgggggtgaatacgacagtgtcagtactgctagcacaaccgcaacgcgttcctccgggtcatttgtcggttga
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| CDS seq | atgaaacgactcttccacattcagTCGTCAAACATCGAGGGTGGCAACGCCGAGTTGGAGATCGCGGTGGCCGCGGCCGGGCCGAGACGGTACAGCTACGCCGAGCTCGCCGCCGCGACGCGTGACTTCGCGGAGGAGGAAAAGCTCGGACGAGGAGGCTTTGGCAGCGTTTACCGAGGCCGCCTCCCCGTCGTCCCGGGTGGCGACGTCGACGGCGGTGGCGGCCAGCAGGTGGCCATCAAGTTCTTGTCGGAGTCGTCGTCGCAGGGAAGGAAGGAGTTCGAGGCCGAGGTGAGGATCATTACCCGTCTGAGGCATCGCAATCTTGTGCAGTTGCTAGGCTGGTGCGATTGCCCCAGGGGTCTCATGCTCGTCTACGAACTTGTGCCGGGAGGGAGCCTAGAGAAGCATATTTATGACAACCAAAGGCTATTAACATGGTCAGAGAGgtacaagatcattataggattgggatcagcgttgcgttaccttcaccaagaatgggagcaatgcgtcctgcacggtgacatcaagccaagcaacatcatggttgactcgtcgtacaacaccaagcttggtgactttgggcttgccaggctcgtcaaccacggcgaacgatggaagaccacgacggctgtgcagggcaccgcggggtacatcgacccggagttcataaatacgcaacgaccgagcaccgagtccgacgtctacagcttcggcatggtcctcctcgagattgtttgtgccaagccaccggtggtcttgcacgaggacgagccgagcttcgtgctgctgaggtgggtgtggagcctgtacagccagaacgcgatcctcgatgccgtggacgaacggctgcgtggtgtctttcgcgacgaacggcagatggagcgtgtgctggtcgtcgggctgtggtgcgcgcaccctgacctgagcgagcgcccatccatcgcccgcgccatgaacgtcctgcagtctgacgacacgaggttgccggatctctcgccgcagatgtacaagtccaaggtctcaccgcctccgagagaagtcgccatGgggggtgaatacgacagtgtcagtactgctagcacaaccgcaacgcgttcctccgggtcatttgtcggttga
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| Protein seq | MKRLFHIQSSNIEGGNAELEIAVAAAGPRRYSYAELAAATRDFAEEEKLGRGGFGSVYRGRLPVVPGGDVDGGGGQQVAIKFLSESSSQGRKEFEAEVRIITRLRHRNLVQLLGWCDCPRGLMLVYELVPGGSLEKHIYDNQRLLTWSERYKIIIGLGSALRYLHQEWEQCVLHGDIKPSNIMVDSSYNTKLGDFGLARLVNHGERWKTTTAVQGTAGYIDPEFINTQRPSTESDVYSFGMVLLEIVCAKPPVVLHEDEPSFVLLRWVWSLYSQNAILDAVDERLRGVFRDERQMERVLVVGLWCAHPDLSERPSIARAMNVLQSDDTRLPDLSPQMYKSKVSPPPREVAMGGEYDSVSTASTTATRSSGSFVG |
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| Function | Probable kinase CHARK [UniProtKB/Swiss-Prot:Q2QRN7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0006480 | OsLima_09g0006480.01 | Chr09 | 11023634 | 11025461 | + | NAM | ||
| CDS seq | atgaaacgactcttccacattcagTCGTCAAACATCGAGGGTGGCAACGCCGAGTTGGAGATCGCGGTGGCCGCGGCCGGGCCGAGACGGTACAGCTACGCCGAGCTCGCCGCCGCGACGCGTGACTTCGCGGAGGAGGAAAAGCTCGGACGAGGAGGCTTTGGCAGCGTTTACCGAGGCCGCCTCCCCGTCGTCCCGGGTGGCGACGTCGACGGCGGTGGCGGCCAGCAGGTGGCCATCAAGTTCTTGTCGGAGTCGTCGTCGCAGGGAAGGAAGGAGTTCGAGGCCGAGGTGAGGATCATTACCCGTCTGAGGCATCGCAATCTTGTGCAGTTGCTAGGCTGGTGCGATTGCCCCAGGGGTCTCATGCTCGTCTACGAACTTGTGCCGGGAGGGAGCCTAGAGAAGCATATTTATGACAACCAAAGGCTATTAACATGGTCAGAGAGgtacaagatcattataggattgggatcagcgttgcgttaccttcaccaagaatgggagcaatgcgtcctgcacggtgacatcaagccaagcaacatcatggttgactcgtcgtacaacaccaagcttggtgactttgggcttgccaggctcgtcaaccacggcgaacgatggaagaccacgacggctgtgcagggcaccgcggggtacatcgacccggagttcataaatacgcaacgaccgagcaccgagtccgacgtctacagcttcggcatggtcctcctcgagattgtttgtgccaagccaccggtggtcttgcacgaggacgagccgagcttcgtgctgctgaggtgggtgtggagcctgtacagccagaacgcgatcctcgatgccgtggacgaacggctgcgtggtgtctttcgcgacgaacggcagatggagcgtgtgctggtcgtcgggctgtggtgcgcgcaccctgacctgagcgagcgcccatccatcgcccgcgccatgaacgtcctgcagtctgacgacacgaggttgccggatctctcgccgcagatgtacaagtccaaggtctcaccgcctccgagagaagtcgccatGgggggtgaatacgacagtgtcagtactgctagcacaaccgcaacgcgttcctccgggtcatttgtcggttga
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| Protein seq | MKRLFHIQSSNIEGGNAELEIAVAAAGPRRYSYAELAAATRDFAEEEKLGRGGFGSVYRGRLPVVPGGDVDGGGGQQVAIKFLSESSSQGRKEFEAEVRIITRLRHRNLVQLLGWCDCPRGLMLVYELVPGGSLEKHIYDNQRLLTWSERYKIIIGLGSALRYLHQEWEQCVLHGDIKPSNIMVDSSYNTKLGDFGLARLVNHGERWKTTTAVQGTAGYIDPEFINTQRPSTESDVYSFGMVLLEIVCAKPPVVLHEDEPSFVLLRWVWSLYSQNAILDAVDERLRGVFRDERQMERVLVVGLWCAHPDLSERPSIARAMNVLQSDDTRLPDLSPQMYKSKVSPPPREVAMGGEYDSVSTASTTATRSSGSFVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.111050 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0339000 | SBH | 0.0 | 0.571398 | 1.361807 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16950 | SBH | 0.0 | 0.383962 | 0.350235 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0339000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006330 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006350 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006560 | SBH | 0.287820 | 0.0 | 0.302329 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006400 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006500 | RBH | 0.0 | 2.470027 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0185400 | RBH | 0.3008635 | 11.5989095 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006620 | RBH | 0.0 | 0.0 | 0.050541 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0161200 | RBH | 0.568095 | 13.139856 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006320 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006240 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006310 | RBH | 0.0 | 5.094132 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006550 | RBH | 0.681358 | 0.0 | 0.562662 |
