Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0005600 | OGI:09027630 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:9851680-9855491 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacgtcattgtgtttgctactgatgatctgaacgttccatgaaaaccatagggtactctttgtggcaatactattttggccacaggagcaccttcaaatgtttgggcgtcaataatgtgcacctgcaacatagaaacatgaaaaaaaCaaattcaaattcaaatttgaatctgtgtgtcattcatacagaaaatggcgtgcgcatgtgatatgatgtaacaagcacttgcctgcgatgtattagacctctcgtcatgtacaaaagaaattatccacccatcatcttcgtgtgagccaccaactcttggaacaaatgctgctccagagaagaattgatcttctccaaacccgtgatattctgtctttattagatcttcagatgtctggttcatgacatgaatgcagtgagttaataatataagataaagattggttgaagtactgtagcaagtccatttccaatgtacctctgcaattacattatctgcctcttcaagacaaagttttgcaaggcctccatatttcaggattactataaaatacagaaagaactatcaatcaaggtgtgatgcacaatcatatttcttgtgaaatatacttctaatccatgccatggacctccagatttgataaattacataaaaactgttttctttaactaatacctttctcattaacgccgtaagagctttccaaagaatccaccacttgtgcataggcataactatgatgcaagcctgtgtagtggtcattgatcacagggaattccatggaaaactcagttccacttaaatattgccctgaaacagcctttgtcttcgtgtttaatctccactggtataatcgagagaaaaattcttcattaattccttgtttcacagaacacttacaaggatcagagagcaaatcatttttgtttaggctgatccgagggcctggaatgatggagtcagccgcacgaaagcccctgataacaacctattttaccaagataaaaaaatgagattcatactggatatgcttggtaatgatggatagttgggtaaaatcagaattactatgctaatgcaactacaagtatatggaacaagctttacaaaactataaaAATactatacctcatcaccctcttcaaagcagttgataaaatggaacatgcagaatggttcaacgtcaaaccacataactgattctgcatcaccataacggggcataactcctattcttgcatagctgtccttctcaaacttgatcaacctgttccaggggattgcgttcttatggttttcaggtttaagccaagaatctctttaataaaataagcttgagtgaaatacttactgattgcctctgataagtctactgatgtcgatggtaagaggTatgtccattattatgttgtacctgcattagtagaaaaaatgtgtaaattgaacttttgctttactggagactgataattaagtagaatatgtcgaaatagattgtagtttagtcattaaactacagcgaagaggctctgattggtacccggacatacttaacagtaactcctatgtcatggcagagtatacatctgtccagtttgaggtcaactttatgttttagttgagttccatcagctgccatgaaataaaacttcaattGgggtcaaactttaaatttaaccttgatagagaggacagaagtaaattctaactatacaattaaatacctgagacaactccgaccattaggaaaggcctctttgcatctgaaccaaaaatgactagctctcctgatccaggagctacctacatccatttgaaccaagtgatttaaagcgatttaaatgataaaacaaaatagcactaaaacatgattttactcagaatgtgaagtcatgtgatgtatcatactttgcagttgttcataactatatatctatagtgtatgatgttcaaataaaaaaatattctacattatttatttatatgtatttagttgtggtgagctcctcatatgtttgtcttcgcatttaaatggcaaagatgtgccatatagcgaaaccacttgctattctgcaataggcttccatcctacgtgctacacatctcattgcgtgacaatatagtccataggcaataatgtgccatatttttggctcgataatcttcttattgaataaaatttccagagcacagatgtaattgaaacaatctgatgattctatttgaagtgcctgggcacctgactttgcacacgtgtttttccaataaccctatatatatctataaagtgtatcccactaagtgtgtagttaatgttaattctttcttctctcataaagccacatcaccttaattatttttagcctttagatcattcattaagggtgcaaattgcatctcttctctctaaaagacatcatatttataacctttagataattgatcaatgtacaaaatatgtaagcatatgaaataaaatcgtatagtacgtaagaaaattttaccatatctcctattttaacacacaattcacccgcaacgttgctgcggggtacccatctagttatatcttctgcctataaatgcttcaattactgattcctattgctcatgtagcttacagaaaatgaccagccatacctttgggtgagctgtgaaaggccttttccattccccattaatgtcccagctatcacccgtgtcgagattctgaatgctgatttcctgaggcaggtggttctcagaaacagcatacacctttccagcatgctcaaatacattggtgttgctgatgttcttgttcactttgccaaacctcatctgcattgcatataatttatccatttcagattgtctgAAaaaaaataacatatagtttattaggcttgtgaagtgttatttttacatagttgagaatgtaggccgcgacgatggctgcagagtcgcccatgatggcagggaggaaacatggcttctgtctggttttctcaatctttaatgtttcagattgcacatatcgatttgcataggagactgaccaagtatctgaactgttctttgtgaagtagatggcatggagcatgccctcgccttcaacccatatttcgctggattttccgaagattgagacggtcgaatggagggctccAaacagtggattggaacctgttgagatttccaccattagcttattattatggtcagcaattctcatgtactgcacacagttatacttatttgttgatactgtaacaagaaaagaatgatgccaccaccatttctgatgtatacaccctctgggaaatcttcaggtatctctccttcaatctgcagaatctctatggcttcactgatctcattgactggggcaaaattgttctgcagaattgtaaaaccatttattttgttattgatgatggacacaatggggaatgaagcaatccttggatcaagtacctctgatgggagcataggttggtcagaaaacttgaaggttgagtcgaccaacgcatccaaaagcccctgttttgctgtctccagcgcctttgaggcttcgtcaatcctgaaagaaagtcgcctctgaagctcctgaaacaaaggtctctggagaaaGAAAGgatctgaagatcaggtatctatcttggagtatgtggtattgcagactaaaaacaagagaagatctaactacattctgcatgagaagaaaatacctttgggtttgtggctgtggattttggctgggttcttgcacccagagaagaggcaggtctgaaggcaggagaggccttgcagacacatggatgcagagaagctgtcatcat
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| CDS seq | atgatgacagcttctctgcatccatgtgtctgcaaggcctctcctgccttcagacctgcctcttctctgggtgcaagaacccagccaaaatccacagccacaaacccaaagagacctttgtttcaggagcttcagaggcgactttctttcaggattgacgaagcctcaaaggcgctggagacagcaaaacaggggcttttggatgcgttggtcgactcaaccttcaagttttctgaccaacctatgctcccatcagagaacaattttgccccagtcaatgagatcagtgaagccatagagattctgcagattgaaggagagatacctgaagatttcccagagggttccaatccactgttTggagccctccattcgaccgtctcaatcttcggaaaatccagcgaaatatgggttgaaggcgagggcatgctccatgccatctacttcacaaagaacagttcagatacttggtcagtctcctatgcaaatcgatatgtgcaatctgaaacattaaagattgagaaaaccagacagaagccatgtttcctccctgccatcatgggcgactctgcagccatcgtcgcggcctacattctcaactatatgaggtttggcaaagtgaacaagaacatcagcaacaccaatgtatttgagcatgctggaaaggtgtatgctgtttctgagaaccacctgcctcaggaaatcagcattcagaatctcgacacgggtgatagctgggacattaatggggaatggaaaaggcctttcacagctcacccaaaggtagctcctggatcaggagagctagtcatttttggttcagatgcaaagaggcctttcctaatggtcggagttgtctcagctgatggaactcaactaaaacataaagttgacctcaaactggacagatgtatactctgccatgacataggagttactgttaagtacaacataataatggacatAcctcttaccatcgacatcagtagacttatcagaggcaatcagttgatcaagtttgagaaggacagctatgcaagaataggagttatgccccgttatggtgatgcagaatcagttatgtggtttgacgttgaaccattctgcatgttccattttatcaactgctttgaagagggtgatgaggttgttatcaggggctttcgtgcggctgactccatcattccaggccctcggatcagcctaaacaaaaatgatttgctctctgatccttgtaagtgttctgtgaaacaaggaattaatgaagaatttttctctcgattataccagtggagattaaacacgaagacaaaggctgtttcagggcaatatttaagtggaactgagttttccatggaattccctgtgatcaatgaccactacacaggcttgcatcatagttatgcctatgcacaagtggtggattctttggaaagctcttacggcgttaatgagaaagtaatcctgaaatatggaggccttgcaaaactttgtcttgaagaggcagataatgtaattgcagagacatctgaagatctaataaagacagaatatcacgggtttggagaagatcaattcttctctggagcagcatttgttccaagagtgcacattattgacgcccaaacatttgaaggtgctcctgtggccaaaatagtattgccacaaagagtaccctatggttttcatggaacgttcagatcatcagtagcaaacacaatgacgtga
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| Protein seq | MMTASLHPCVCKASPAFRPASSLGARTQPKSTATNPKRPLFQELQRRLSFRIDEASKALETAKQGLLDALVDSTFKFSDQPMLPSENNFAPVNEISEAIEILQIEGEIPEDFPEGSNPLFGALHSTVSIFGKSSEIWVEGEGMLHAIYFTKNSSDTWSVSYANRYVQSETLKIEKTRQKPCFLPAIMGDSAAIVAAYILNYMRFGKVNKNISNTNVFEHAGKVYAVSENHLPQEISIQNLDTGDSWDINGEWKRPFTAHPKVAPGSGELVIFGSDAKRPFLMVGVVSADGTQLKHKVDLKLDRCILCHDIGVTVKYNIIMDIPLTIDISRLIRGNQLIKFEKDSYARIGVMPRYGDAESVMWFDVEPFCMFHFINCFEEGDEVVIRGFRAADSIIPGPRISLNKNDLLSDPCKCSVKQGINEEFFSRLYQWRLNTKTKAVSGQYLSGTEFSMEFPVINDHYTGLHHSYAYAQVVDSLESSYGVNEKVILKYGGLAKLCLEEADNVIAETSEDLIKTEYHGFGEDQFFSGAAFVPRVHIIDAQTFEGAPVAKIVLPQRVPYGFHGTFRSSVANTMT |
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| Function | Carotenoid 9,10(9',10')-cleavage dioxygenase [UniProtKB/Swiss-Prot:Q84KG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0005600 | OsLima_09g0005600.01 | Chr09 | 9851680 | 9855491 | - | NAM | ||
| CDS seq | atgatgacagcttctctgcatccatgtgtctgcaaggcctctcctgccttcagacctgcctcttctctgggtgcaagaacccagccaaaatccacagccacaaacccaaagagacctttgtttcaggagcttcagaggcgactttctttcaggattgacgaagcctcaaaggcgctggagacagcaaaacaggggcttttggatgcgttggtcgactcaaccttcaagttttctgaccaacctatgctcccatcagagaacaattttgccccagtcaatgagatcagtgaagccatagagattctgcagattgaaggagagatacctgaagatttcccagagggttccaatccactgttTggagccctccattcgaccgtctcaatcttcggaaaatccagcgaaatatgggttgaaggcgagggcatgctccatgccatctacttcacaaagaacagttcagatacttggtcagtctcctatgcaaatcgatatgtgcaatctgaaacattaaagattgagaaaaccagacagaagccatgtttcctccctgccatcatgggcgactctgcagccatcgtcgcggcctacattctcaactatatgaggtttggcaaagtgaacaagaacatcagcaacaccaatgtatttgagcatgctggaaaggtgtatgctgtttctgagaaccacctgcctcaggaaatcagcattcagaatctcgacacgggtgatagctgggacattaatggggaatggaaaaggcctttcacagctcacccaaaggtagctcctggatcaggagagctagtcatttttggttcagatgcaaagaggcctttcctaatggtcggagttgtctcagctgatggaactcaactaaaacataaagttgacctcaaactggacagatgtatactctgccatgacataggagttactgttaagtacaacataataatggacatAcctcttaccatcgacatcagtagacttatcagaggcaatcagttgatcaagtttgagaaggacagctatgcaagaataggagttatgccccgttatggtgatgcagaatcagttatgtggtttgacgttgaaccattctgcatgttccattttatcaactgctttgaagagggtgatgaggttgttatcaggggctttcgtgcggctgactccatcattccaggccctcggatcagcctaaacaaaaatgatttgctctctgatccttgtaagtgttctgtgaaacaaggaattaatgaagaatttttctctcgattataccagtggagattaaacacgaagacaaaggctgtttcagggcaatatttaagtggaactgagttttccatggaattccctgtgatcaatgaccactacacaggcttgcatcatagttatgcctatgcacaagtggtggattctttggaaagctcttacggcgttaatgagaaagtaatcctgaaatatggaggccttgcaaaactttgtcttgaagaggcagataatgtaattgcagagacatctgaagatctaataaagacagaatatcacgggtttggagaagatcaattcttctctggagcagcatttgttccaagagtgcacattattgacgcccaaacatttgaaggtgctcctgtggccaaaatagtattgccacaaagagtaccctatggttttcatggaacgttcagatcatcagtagcaaacacaatgacgtga
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| Protein seq | MMTASLHPCVCKASPAFRPASSLGARTQPKSTATNPKRPLFQELQRRLSFRIDEASKALETAKQGLLDALVDSTFKFSDQPMLPSENNFAPVNEISEAIEILQIEGEIPEDFPEGSNPLFGALHSTVSIFGKSSEIWVEGEGMLHAIYFTKNSSDTWSVSYANRYVQSETLKIEKTRQKPCFLPAIMGDSAAIVAAYILNYMRFGKVNKNISNTNVFEHAGKVYAVSENHLPQEISIQNLDTGDSWDINGEWKRPFTAHPKVAPGSGELVIFGSDAKRPFLMVGVVSADGTQLKHKVDLKLDRCILCHDIGVTVKYNIIMDIPLTIDISRLIRGNQLIKFEKDSYARIGVMPRYGDAESVMWFDVEPFCMFHFINCFEEGDEVVIRGFRAADSIIPGPRISLNKNDLLSDPCKCSVKQGINEEFFSRLYQWRLNTKTKAVSGQYLSGTEFSMEFPVINDHYTGLHHSYAYAQVVDSLESSYGVNEKVILKYGGLAKLCLEEADNVIAETSEDLIKTEYHGFGEDQFFSGAAFVPRVHIIDAQTFEGAPVAKIVLPQRVPYGFHGTFRSSVANTMT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0321200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g15240 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0321200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005400 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005440 | RBH | 0.0 | 0.511064 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005620 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005460 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005700 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0163100 | RBH | 0 | 0.4539345 | 0.469792 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005860 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0141700 | RBH | 0.0213185 | 0.0444955 | 0.672252 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013280 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005510 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005580 | RBH | 0.0 | 0.0 | 0.0 |
