Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0005450 | OGI:09026410 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:9434551-9435087 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaagtgtcaactccttgaacaaatcatcaggggtgtagtactctgcgggttgaggctgaagggaaatcaagctgctgctgtctaacccaacatggttgttgttgatgtcgaagaattcactgtctcttttggtatcgaattcgacagcaaacaagaagttttcatcatcaaagggatcaagtcccatgtacataccttgcaagttgttctgtgatccaatgtttgtagatattaccaatgcaaacccattagcactcctgttggcataatcagaggagatgacgaacacaaaacttgtcgagaaagaaggtatttttccagctgacgaagggaagctccgggaagcatggctacttttttgggggatgttgccaaggttcaggagtccccttgtgactgaagcttccccgttaagactaagatcagtatctttaaatccattgcagatgaattggtcagaatcagcatctagcttagtggcatggaggatgaggaaaaggagaaagaagaagggcagcagagaggaaggaagcat
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| CDS seq | atgcttccttcctctctgctgcccttcttctttctccttttcctcatcctccatgccactaagctagatgctgattctgaccaattcatctgcaatggatttaaagatactgatcttagtcttaacggggaagcttcagtcacaaggggactcctgaaccttggcaacatcccccaaaaaagtagccatgcttcccggagcttcccttcgtcagctggaaaaataccttctttctcgacaagttttgtgttcgtcatctcctctgattatgccaacaggagtgctaatgggtttgcattggtaatatctacaaacattggatcacagaacaacttgcaaggtatgtacatgggacttgatccctttgatgatgaaaacttcttgtttgctgtcgaattcgataccaaaagagacagtgaattcttcgacatcaacaacaaccatgttgggttagacagcagcagcttgatttcccttcagcctcaacccgcagagtactacacccctgatgatttgttcaaggagttgacactttga
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| Protein seq | MLPSSLLPFFFLLFLILHATKLDADSDQFICNGFKDTDLSLNGEASVTRGLLNLGNIPQKSSHASRSFPSSAGKIPSFSTSFVFVISSDYANRSANGFALVISTNIGSQNNLQGMYMGLDPFDDENFLFAVEFDTKRDSEFFDINNNHVGLDSSSLISLQPQPAEYYTPDDLFKELTL |
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| Function | L-type lectin-domain containing receptor kinase IV.1 [UniProtKB/Swiss-Prot:O80939] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0005450 | OsLima_09g0005450.01 | Chr09 | 9434551 | 9435087 | - | NAM | ||
| CDS seq | atgcttccttcctctctgctgcccttcttctttctccttttcctcatcctccatgccactaagctagatgctgattctgaccaattcatctgcaatggatttaaagatactgatcttagtcttaacggggaagcttcagtcacaaggggactcctgaaccttggcaacatcccccaaaaaagtagccatgcttcccggagcttcccttcgtcagctggaaaaataccttctttctcgacaagttttgtgttcgtcatctcctctgattatgccaacaggagtgctaatgggtttgcattggtaatatctacaaacattggatcacagaacaacttgcaaggtatgtacatgggacttgatccctttgatgatgaaaacttcttgtttgctgtcgaattcgataccaaaagagacagtgaattcttcgacatcaacaacaaccatgttgggttagacagcagcagcttgatttcccttcagcctcaacccgcagagtactacacccctgatgatttgttcaaggagttgacactttga
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| Protein seq | MLPSSLLPFFFLLFLILHATKLDADSDQFICNGFKDTDLSLNGEASVTRGLLNLGNIPQKSSHASRSFPSSAGKIPSFSTSFVFVISSDYANRSANGFALVISTNIGSQNNLQGMYMGLDPFDDENFLFAVEFDTKRDSEFFDINNNHVGLDSSSLISLQPQPAEYYTPDDLFKELTL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g14660 | RBH | 0.0 | 0.0 | 0.300957 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005200 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005230 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005420 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005280 | SBH | 0.0 | 0.115922 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005490 | SBH | 1.339444 | 10.140817 | 7.343295 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0154700 | RBH | 0.2598405 | 1.8226315 | 0.9926275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005650 | SBH | 0.0 | 0.112593 | 0.364654 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0136000 | RBH | 0 | 0.089364 | 0.2164115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005310 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005200 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005260 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005530 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005420 | RBH | 0.0 | 0.0 | 0.593590 |
