Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0005130 | OGI:09024430 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:8945347-8947247 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtacaatgaacatgccaccttcagcagaatgaaacaagacagaaacgttacaaggaaatgagcatcgatggagtcacaggtaagtaatgttcatgaagtaaattaaggaaatattcccttccattgccacatatatacagtgctagctctctctcttcattttcaatcgcttttgaggtgcctctgtcgagtgtagtctatgccaaatggcctaaaaatttatatgctatatttgtgatttgcaattttacctgattatttctttcctcagattcattctttcgttgcataTttatatttcaataattcataaactggtccatagtcaacagattatgtattattatatgtgcttcagaatttcagatcaccatataaattataaagatttcgcaattaagcatatcatgtgcttcagatcaccatatattatatatatgacacttggcatgcttaaccagaagaattttcaggggattaccaaacccaaattgacatcaatcttctcgccgaccaactagaggcaaaactatgcgacgttcctttggacgacggcggccggcgacacggctcgccggagtgccacatttccatcgtgaagccgcaagtccgcctcgtcgacgtatcgcagtacgctccgcaggtgctgctcgtcggcgcctaccaccacaggtcgctggaccggtgtgagctggacaagctggcggcgctccggcgtgccctccccgacggcgacgacgagcgggcgtccacgctgaggcgctacctggcggccatcgccgacctcgaaagcgaggcgcggagctactaccgcgatgacacggatggcatgagcgcggaggagtttgcgttgatgctgctgctcgacgggtggtacatactccactacttcggcgtcggcgtcggcggcggcgggagagcggtggacatcttcgccgtgcgcgacgtgttctacctgctcgagaaccagatacccttcttcatcctcgagaaggtctacgagctgatccactctccccctccttctccgggagctacagccatcgccggcggcgggtcgtcgtcttcctccgtcgtggttgtcgatgggttcgtgcgccatctccggtcactcctccgagaccagggctactcgaatctggaggtggacatcaccagcacacgcccctgtcacctcgtccatttactgcacatgcacttcacacccatggcgatggcgccggccgccgacgacgctgccgctgtccccatCcccaccaggcgcgcgcgcgccaccgtgtaccgctggcgccgggcgacgcagtaccacgccgccggcgtgaggttcaagagacgggccctcggcctcggcgacgcacggtgcgtcctcgacgtggagctccggcggctgacgctgcacgtcccgacgctgacggtggacaacaacacgtggcgggtcctgcgcaacctgatggcgctggagcagaacaacccaaacctgggcagccacgtcacggcctactgcctcttcatgtcgcatctcgccggcacggcgagcgacgtcgcgctcctggcgaggaagaagatcatcgtgcacttcatggggtgcgacgaggacgtcgccgacgggttcgccggcctgtgcaggggcgtggcgctcgacgtcgacgacgcgcgccggaactacctgcagccgacgtgggagaggatggagcggtggtacagcagccggccggtcaactggatggcgctgctgcggcggcggcatttgagcaacccgctggtggcgatcgcgctgctcgccgccattgctggcctagtctgtgaagttcttcaggctgtgtatgccgtcaagagctacaagactagaagctaagccactgagacgtatgccactgtatgcctaccgattttacgttgat
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| CDS seq | atgagcatcgatggagtcacaggggattaccaaacccaaattgacatcaatcttctcgccgaccaactagaggcaaaactatgcgacgttcctttggacgacggcggccggcgacacggctcgccggagtgccacatttccatcgtgaagccgcaagtccgcctcgtcgacgtatcgcagtacgctccgcaggtgctgctcgtcggcgcctaccaccacaggtcgctggaccggtgtgagctggacaagctggcggcgctccggcgtgccctccccgacggcgacgacgagcgggcgtccacgctgaggcgctacctggcggccatcgccgacctcgaaagcgaggcgcggagctactaccgcgatgacacggatggcatgagcgcggaggagtttgcgttgatgctgctgctcgacgggtggtacatactccactacttcggcgtcggcgtcggcggcggcgggagagcggtggacatcttcgccgtgcgcgacgtgttctacctgctcgagaaccagatacccttcttcatcctcgagaaggtctacgagctgatccactctccccctccttctccgggagctacagccatcgccggcggcgggtcgtcgtcttcctccgtcgtggttgtcgatgggttcgtgcgccatctccggtcactcctccgagaccagggctactcgaatctggaggtggacatcaccagcacacgcccctgtcacctcgtccatttactgcacatgcacttcacacccatggcgatggcgccggccgccgacgacgctgccgctgtccccatCcccaccaggcgcgcgcgcgccaccgtgtaccgctggcgccgggcgacgcagtaccacgccgccggcgtgaggttcaagagacgggccctcggcctcggcgacgcacggtgcgtcctcgacgtggagctccggcggctgacgctgcacgtcccgacgctgacggtggacaacaacacgtggcgggtcctgcgcaacctgatggcgctggagcagaacaacccaaacctgggcagccacgtcacggcctactgcctcttcatgtcgcatctcgccggcacggcgagcgacgtcgcgctcctggcgaggaagaagatcatcgtgcacttcatggggtgcgacgaggacgtcgccgacgggttcgccggcctgtgcaggggcgtggcgctcgacgtcgacgacgcgcgccggaactacctgcagccgacgtgggagaggatggagcggtggtacagcagccggccggtcaactggatggcgctgctgcggcggcggcatttgagcaacccgctggtggcgatcgcgctgctcgccgccattgctggcctagtctgtgaagttcttcaggctgtgtatgccgtcaagagctacaagactagaagctaa
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| Protein seq | MSIDGVTGDYQTQIDINLLADQLEAKLCDVPLDDGGRRHGSPECHISIVKPQVRLVDVSQYAPQVLLVGAYHHRSLDRCELDKLAALRRALPDGDDERASTLRRYLAAIADLESEARSYYRDDTDGMSAEEFALMLLLDGWYILHYFGVGVGGGGRAVDIFAVRDVFYLLENQIPFFILEKVYELIHSPPPSPGATAIAGGGSSSSSVVVVDGFVRHLRSLLRDQGYSNLEVDITSTRPCHLVHLLHMHFTPMAMAPAADDAAAVPIPTRRARATVYRWRRATQYHAAGVRFKRRALGLGDARCVLDVELRRLTLHVPTLTVDNNTWRVLRNLMALEQNNPNLGSHVTAYCLFMSHLAGTASDVALLARKKIIVHFMGCDEDVADGFAGLCRGVALDVDDARRNYLQPTWERMERWYSSRPVNWMALLRRRHLSNPLVAIALLAAIAGLVCEVLQAVYAVKSYKTRS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0005130 | OsLima_09g0005130.01 | Chr09 | 8945347 | 8947247 | + | NAM | ||
| CDS seq | atgagcatcgatggagtcacaggggattaccaaacccaaattgacatcaatcttctcgccgaccaactagaggcaaaactatgcgacgttcctttggacgacggcggccggcgacacggctcgccggagtgccacatttccatcgtgaagccgcaagtccgcctcgtcgacgtatcgcagtacgctccgcaggtgctgctcgtcggcgcctaccaccacaggtcgctggaccggtgtgagctggacaagctggcggcgctccggcgtgccctccccgacggcgacgacgagcgggcgtccacgctgaggcgctacctggcggccatcgccgacctcgaaagcgaggcgcggagctactaccgcgatgacacggatggcatgagcgcggaggagtttgcgttgatgctgctgctcgacgggtggtacatactccactacttcggcgtcggcgtcggcggcggcgggagagcggtggacatcttcgccgtgcgcgacgtgttctacctgctcgagaaccagatacccttcttcatcctcgagaaggtctacgagctgatccactctccccctccttctccgggagctacagccatcgccggcggcgggtcgtcgtcttcctccgtcgtggttgtcgatgggttcgtgcgccatctccggtcactcctccgagaccagggctactcgaatctggaggtggacatcaccagcacacgcccctgtcacctcgtccatttactgcacatgcacttcacacccatggcgatggcgccggccgccgacgacgctgccgctgtccccatCcccaccaggcgcgcgcgcgccaccgtgtaccgctggcgccgggcgacgcagtaccacgccgccggcgtgaggttcaagagacgggccctcggcctcggcgacgcacggtgcgtcctcgacgtggagctccggcggctgacgctgcacgtcccgacgctgacggtggacaacaacacgtggcgggtcctgcgcaacctgatggcgctggagcagaacaacccaaacctgggcagccacgtcacggcctactgcctcttcatgtcgcatctcgccggcacggcgagcgacgtcgcgctcctggcgaggaagaagatcatcgtgcacttcatggggtgcgacgaggacgtcgccgacgggttcgccggcctgtgcaggggcgtggcgctcgacgtcgacgacgcgcgccggaactacctgcagccgacgtgggagaggatggagcggtggtacagcagccggccggtcaactggatggcgctgctgcggcggcggcatttgagcaacccgctggtggcgatcgcgctgctcgccgccattgctggcctagtctgtgaagttcttcaggctgtgtatgccgtcaagagctacaagactagaagctaa
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| Protein seq | MSIDGVTGDYQTQIDINLLADQLEAKLCDVPLDDGGRRHGSPECHISIVKPQVRLVDVSQYAPQVLLVGAYHHRSLDRCELDKLAALRRALPDGDDERASTLRRYLAAIADLESEARSYYRDDTDGMSAEEFALMLLLDGWYILHYFGVGVGGGGRAVDIFAVRDVFYLLENQIPFFILEKVYELIHSPPPSPGATAIAGGGSSSSSVVVVDGFVRHLRSLLRDQGYSNLEVDITSTRPCHLVHLLHMHFTPMAMAPAADDAAAVPIPTRRARATVYRWRRATQYHAAGVRFKRRALGLGDARCVLDVELRRLTLHVPTLTVDNNTWRVLRNLMALEQNNPNLGSHVTAYCLFMSHLAGTASDVALLARKKIIVHFMGCDEDVADGFAGLCRGVALDVDDARRNYLQPTWERMERWYSSRPVNWMALLRRRHLSNPLVAIALLAAIAGLVCEVLQAVYAVKSYKTRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.219892 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0305300 | RBH | 1.408404 | 1.346211 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g13470 | RBH | 0.934751 | 0.888627 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0305300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004890 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005100 | RBH | 0.952903 | 0.0 | 2.488391 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005000 | RBH | 0.0 | 0.000000 | 0.750336 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0142500 | RBH | 5.1386775 | 1.734958 | 0.4090935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005150 | RBH | 0.305789 | 0.106435 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0130500 | RBH | 2.0433115 | 1.7258845 | 1.1853505 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012580 | SBH | 0.0 | 0.200589 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005020 | RBH | 0.605179 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005000 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004880 | RBH | 0.183469 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004940 | RBH | 0.079559 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005210 | RBH | 0.282371 | 0.629906 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004970 | RBH | 0.000000 | 0.0 | 0.0 |
