Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0004920 | OGI:09023370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:8524039-8528771 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaggaaggtacttacgtgtagatcgtgcatacatatcgtcattataattatattatctattatttatgaatgtagtgttccacgtccatgatatatatgctgagaatttttccagctaaatagtatagtatcagttacgtagttattaacaaattttgctgccaaatgttttcgttaaatttgttcaattttcggaaagttctccatcatctttgggcatctcttaatattatgtcaatggttttgctaatttgcaattatacgtacaagcgaacttcctttgtttgtcatcagccaagcgccttggagtcttggacgttacatgtcttgaaattacatagacatatagtatgattatatctagttctcttatatttatcgcatatcgttgtttgttttcatccctacgcgcttaagtggcgaagccagagatcacataagagtagggctaaggtagggctcaactaatagggtattcatttttttacaaaatttacatggtgaattaacaaaatttaactgagttcttagaggcaggcctagggctcaagccctagctgagccctaggcctgcctccgcccctggcgctatatattaaagctatttatttgttaacaccatggatgataggttaatttatttttgtcgtgttggcatgcgtatgactagcatatggtcttgggtgcccttataattattatctcacatctatctatctattatatactaaaagtccattaaacttcccatgcataaacgctttcaaaccgtcatggtctcctacaaacgctcctaataagccaccacatgatgttctaataaattagaaaaggtatgataaATatataaccattgatttttccttaaatcggtgaacccattaattttaaccattagatctttatcgggaaattttttttccggttgcgcaagtacttactgcccccaccctacggccagcctccaactctcccctcccctattttctactccctccatccaaaagattaagacatattttattttattttgtttttagaaagtctaaaacctatttgtaatctctgtgctaaattaaatttttgaccgaaacccaagaagtcatctcagtacgtattgttggttgcatgcatgtgtatagttcgttggttttatcacatgatggatgagttaattactacttgatcttggtgataaaagaaatatatacttttggatgaagagagtagctaacttctcctattttgtagctaccacttaggtccgtcttaagattttctaattagatttatcttaaaaaccacacgtagaaatggtcccatatcccttctgtgatgtgcacgtatgtgtttatgtacgtaccatcttttttgttctttttccttcatggttagatgagataaaaaaacaaattaataatttaatacccatattaactatgttttaagttgtaaaattatgttactcaagttatattctagctatgtgcatgccatcgaaacaatcatAaaaagtacaaatcaatttataaaatatattatataattgtatagcaatcaccgagccccatatgaccgaacagattggacctcagagaggattgaagttctatattaaaaaatattcgtaataaataaaagtacgaatacttgaaagttgttttgattttttttcttattacaattttacaatggcgtagtaaccttttcgactatcactttggttcaattttctccggcacttatgcaggtatatacgaagttatatatatgaTGATtgacaataatgattatatcaccctatataactttatttacaaatagtcataaattattaatttttaaacacattaaacgtgttatataaccctcctactaaagttcttaaagcctataataaatttgagataatagcactatatattctttaaaaaggtaagataacaaacacttaacttgtattaaatttcctatcggataatttgtatggcttaatttgtatgtgttttcccatgttatagctagaccatcatactgagggaaaaaaagtcttacaattatgttattaagaaaaaaacatacaggtatcatgtaagcttgtattaagccgtcacaaggagagtaaggttgtagaagatgatgactagggtcaagttgcattagatttctaaccaaccgaaccacaatactacatgagtccaacaaggatcacaacgagccaccaagacatgacaacaagggaaacccttgacaacaaatttgtgatatatgactaaacattgtttgaactttgtatatctatatatattattattagtatcatctttatttgaaaagggccgaggagctccatatttagttaaaattatcagaattgatattaatgttatgaacaaccaattaggtaccactatcagccatcagacatgcgctagagtcgctaaggaaaacattgaaaaaaCaaatttcaaataataattagttttgtaagatctcaattttagtactatatattaaacttgatgcgtgcaaacaagaactccaattcttcccctgcaagcaagcctcgatggatttattaaatgacgtatggttgccttatatataaaaaatcgtatcggatataaatatgtaatttctaataatttttagttatcaaaaaacaatttaacatttagaaaaatagcagtgtatgtgcaatatcataggatacctatctagttctactaaaatagtgacacattctaaaaatatatactgcgataatccaacaaagtatagtatttcaaaaggaatttatatttttttatatgtggtcttatgataaaatgaatgacgttgtggttatatcagatgttaatgatgtgcctgaaaacaaaaagcatgactcgtggctataattaacatgatgcgttatgagcgcctacgtttgtacatgatgaacttttgacttctatggttagggggggggtgagggttgaaaataacattcacttgttcaattttaaaatgcccgtgctaactcttgtcttttagtgtgtccaagcgttaatttgtcatatatatagtagtttaccatataatttgtagacgttcaataatattattgtgaaaaagaaaaaaatctgacgatgtaaatagtatataagtaaatatcattagatagtctctgcctctctggtctaaaatggtagcaacgggctcttttaatttgatttgcaggaaaccccaatccgaaaacaatcatcgacatgaaggcattggttgagggtttggacgagagcatgcgcaatttggatttgaagggcaagggaatcgtcccttcttcagagtaccacatctcaatggtgaagagcggcattcgcaacgtcgacagttcccagtacgccccacactcgatcctcgtcggcccctaccactgcgatcccgaccagcggatggaacccgtgaagctggaggcgctccacggcgccctccccggcgacgagcaggagcggcggtccacgctgcaccgctacctgggcgagatcgccgccgccaacttccttgccgaagtgaggagatactacgcagacggcgccaataagttcgaggacctggcgctgtcgaaactgttgctggtcgatgggttctacatcctccattgctttggcatcggcagattcgggggaggaagcagctcctccggcggcGggatgtgcgcgcaggacaacatcgagcacatccgcgacgtgttctacctcctggagaaccagatacccttcttcgtcctcgtgaagatccacgacctgttcttcccgccggaaacatcccccatcaagtctaccgccgagattgtgctcgacgacctggagaagtctctccgaccccttctaacattcctcggctacacgcagctggaaatcaggggtgtctccccatggcatctcctccacctgctctacatgcacttcaaacccaccgccgtaccagagccagacgacgagatgccggccaccggcgccaccgccgccgcctctaacgtgcagcaagttgcgcgaccgcctactagtcattcgtggaggatgtggctcacgggcaccgccgctaccaccccggctccggtaggcgaaggcggcgacgccgccgctggcaacaagccacaccctgcctaccggtggcacggggcgacgcagtaccacgccgccggcatgacgttcgagaagcggagactggacagcagcagcaaggcgcgcaacatcctggacgtggagctccggcggctgacggtgtacatcccgaccatcacggtggacaacaacacgttcaggatcctgcgcaacttgctggcgctggagcagcagagcccggcgctgggcgtggacgtcacggcctactgcctcttcatgtcgcacctcgccggcacggcgaaggacgtggacctgctggtgaggaaggaggtcatcgtccacttcatgggctccgacgaggaggtggctcagggattcgccgacctctgcaagggcctctccgtgaacatcagcgacaccggccgcaactacctgcacaagacctgggagaagatggagaaacggtacaacagccggcatatcaactggatcaagcagctgcaacggaaacacctgagcaactccgcgttggtgttcgccctgctggttgccatgattccttttgtctgcacaattctccagaccgtctatgccgtcaagagctacaaggcttcaaattaa
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| CDS seq | atggaggaaggaaaccccaatccgaaaacaatcatcgacatgaaggcattggttgagggtttggacgagagcatgcgcaatttggatttgaagggcaagggaatcgtcccttcttcagagtaccacatctcaatggtgaagagcggcattcgcaacgtcgacagttcccagtacgccccacactcgatcctcgtcggcccctaccactgcgatcccgaccagcggatggaacccgtgaagctggaggcgctccacggcgccctccccggcgacgagcaggagcggcggtccacgctgcaccgctacctgggcgagatcgccgccgccaacttccttgccgaagtgaggagatactacgcagacggcgccaataagttcgaggacctggcgctgtcgaaactgttgctggtcgatgggttctacatcctccattgctttggcatcggcagattcgggggaggaagcagctcctccggcggcGggatgtgcgcgcaggacaacatcgagcacatccgcgacgtgttctacctcctggagaaccagatacccttcttcgtcctcgtgaagatccacgacctgttcttcccgccggaaacatcccccatcaagtctaccgccgagattgtgctcgacgacctggagaagtctctccgaccccttctaacattcctcggctacacgcagctggaaatcaggggtgtctccccatggcatctcctccacctgctctacatgcacttcaaacccaccgccgtaccagagccagacgacgagatgccggccaccggcgccaccgccgccgcctctaacgtgcagcaagttgcgcgaccgcctactagtcattcgtggaggatgtggctcacgggcaccgccgctaccaccccggctccggtaggcgaaggcggcgacgccgccgctggcaacaagccacaccctgcctaccggtggcacggggcgacgcagtaccacgccgccggcatgacgttcgagaagcggagactggacagcagcagcaaggcgcgcaacatcctggacgtggagctccggcggctgacggtgtacatcccgaccatcacggtggacaacaacacgttcaggatcctgcgcaacttgctggcgctggagcagcagagcccggcgctgggcgtggacgtcacggcctactgcctcttcatgtcgcacctcgccggcacggcgaaggacgtggacctgctggtgaggaaggaggtcatcgtccacttcatgggctccgacgaggaggtggctcagggattcgccgacctctgcaagggcctctccgtgaacatcagcgacaccggccgcaactacctgcacaagacctgggagaagatggagaaacggtacaacagccggcatatcaactggatcaagcagctgcaacggaaacacctgagcaactccgcgttggtgttcgccctgctggttgccatgattccttttgtctgcacaattctccagaccgtctatgccgtcaagagctacaaggcttcaaattaa
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| Protein seq | MEEGNPNPKTIIDMKALVEGLDESMRNLDLKGKGIVPSSEYHISMVKSGIRNVDSSQYAPHSILVGPYHCDPDQRMEPVKLEALHGALPGDEQERRSTLHRYLGEIAAANFLAEVRRYYADGANKFEDLALSKLLLVDGFYILHCFGIGRFGGGSSSSGGGMCAQDNIEHIRDVFYLLENQIPFFVLVKIHDLFFPPETSPIKSTAEIVLDDLEKSLRPLLTFLGYTQLEIRGVSPWHLLHLLYMHFKPTAVPEPDDEMPATGATAAASNVQQVARPPTSHSWRMWLTGTAATTPAPVGEGGDAAAGNKPHPAYRWHGATQYHAAGMTFEKRRLDSSSKARNILDVELRRLTVYIPTITVDNNTFRILRNLLALEQQSPALGVDVTAYCLFMSHLAGTAKDVDLLVRKEVIVHFMGSDEEVAQGFADLCKGLSVNISDTGRNYLHKTWEKMEKRYNSRHINWIKQLQRKHLSNSALVFALLVAMIPFVCTILQTVYAVKSYKASN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0004920 | OsLima_09g0004920.01 | Chr09 | 8524039 | 8528771 | + | NAM | ||
| CDS seq | atggaggaaggaaaccccaatccgaaaacaatcatcgacatgaaggcattggttgagggtttggacgagagcatgcgcaatttggatttgaagggcaagggaatcgtcccttcttcagagtaccacatctcaatggtgaagagcggcattcgcaacgtcgacagttcccagtacgccccacactcgatcctcgtcggcccctaccactgcgatcccgaccagcggatggaacccgtgaagctggaggcgctccacggcgccctccccggcgacgagcaggagcggcggtccacgctgcaccgctacctgggcgagatcgccgccgccaacttccttgccgaagtgaggagatactacgcagacggcgccaataagttcgaggacctggcgctgtcgaaactgttgctggtcgatgggttctacatcctccattgctttggcatcggcagattcgggggaggaagcagctcctccggcggcGggatgtgcgcgcaggacaacatcgagcacatccgcgacgtgttctacctcctggagaaccagatacccttcttcgtcctcgtgaagatccacgacctgttcttcccgccggaaacatcccccatcaagtctaccgccgagattgtgctcgacgacctggagaagtctctccgaccccttctaacattcctcggctacacgcagctggaaatcaggggtgtctccccatggcatctcctccacctgctctacatgcacttcaaacccaccgccgtaccagagccagacgacgagatgccggccaccggcgccaccgccgccgcctctaacgtgcagcaagttgcgcgaccgcctactagtcattcgtggaggatgtggctcacgggcaccgccgctaccaccccggctccggtaggcgaaggcggcgacgccgccgctggcaacaagccacaccctgcctaccggtggcacggggcgacgcagtaccacgccgccggcatgacgttcgagaagcggagactggacagcagcagcaaggcgcgcaacatcctggacgtggagctccggcggctgacggtgtacatcccgaccatcacggtggacaacaacacgttcaggatcctgcgcaacttgctggcgctggagcagcagagcccggcgctgggcgtggacgtcacggcctactgcctcttcatgtcgcacctcgccggcacggcgaaggacgtggacctgctggtgaggaaggaggtcatcgtccacttcatgggctccgacgaggaggtggctcagggattcgccgacctctgcaagggcctctccgtgaacatcagcgacaccggccgcaactacctgcacaagacctgggagaagatggagaaacggtacaacagccggcatatcaactggatcaagcagctgcaacggaaacacctgagcaactccgcgttggtgttcgccctgctggttgccatgattccttttgtctgcacaattctccagaccgtctatgccgtcaagagctacaaggcttcaaattaa
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| Protein seq | MEEGNPNPKTIIDMKALVEGLDESMRNLDLKGKGIVPSSEYHISMVKSGIRNVDSSQYAPHSILVGPYHCDPDQRMEPVKLEALHGALPGDEQERRSTLHRYLGEIAAANFLAEVRRYYADGANKFEDLALSKLLLVDGFYILHCFGIGRFGGGSSSSGGGMCAQDNIEHIRDVFYLLENQIPFFVLVKIHDLFFPPETSPIKSTAEIVLDDLEKSLRPLLTFLGYTQLEIRGVSPWHLLHLLYMHFKPTAVPEPDDEMPATGATAAASNVQQVARPPTSHSWRMWLTGTAATTPAPVGEGGDAAAGNKPHPAYRWHGATQYHAAGMTFEKRRLDSSSKARNILDVELRRLTVYIPTITVDNNTFRILRNLLALEQQSPALGVDVTAYCLFMSHLAGTAKDVDLLVRKEVIVHFMGSDEEVAQGFADLCKGLSVNISDTGRNYLHKTWEKMEKRYNSRHINWIKQLQRKHLSNSALVFALLVAMIPFVCTILQTVYAVKSYKASN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0305300 | SBH | 1.408404 | 1.346211 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g13250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0305300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004830 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004850 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004980 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004790 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0134000 | RBH | 0 | 0.5769395 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004940 | RBH | 0.0 | 0.550139 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0126700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005060 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004790 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004870 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004660 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004720 | RBH | 0.0 | 0.915890 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005020 | RBH | 0.0 | 0.369289 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004860 | RBH | 0.0 | 0.0 | 0.0 |
