Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0003820 | OGI:09018170 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:6575605-6576146 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccctaaagatcaatgattagcatcggtattgtgaatgtcttcaaacatcttctcaagtaactcctcattttgcaagccgaccttcataaatttggtacaacctgctatgtcctacatgacataacattataaaataagttagaacacttcttttggtttgcatttgtttaatttaacaccatatgaATaaaaacttactgattttagttgtttccagcgtgcagaaatagttgtgactgctttccttgcatcatccaatcccaaatctgtttgagatttcaatttttttcaacaattgtactcgatcctaaatttatcctatttgtccttaatttgaagcctagtgtatctcagccctatccttgaggcaaatcgctcaatgacttcatcataacccagaattggataaatgagtatttggacgattacctgtagctacttgatcaacaaaaatgtcacacacaactctagtgttgtagtcattccaataagaagaatcaatgggtattttaacacccttcgatggcacattttgagccat
More
|
||||||||||
| CDS seq | atggctcaaaatgtgccatcgaagggtgttaaaatacccattgattcttcttattggaatgactacaacactagagttgtgtgtgacatttttgttgatcaagtagctacagatttgggattggatgatgcaaggaaagcagtcacaactatttctgcacgctggaaacaactaaaatcagacatagcaggttgtaccaaatttatgaaggtcggcttgcaaaatgaggagttacttgagaagatgtttgaagacattcacaataccgatgctaatcattga |
||||||||||
| Protein seq | MAQNVPSKGVKIPIDSSYWNDYNTRVVCDIFVDQVATDLGLDDARKAVTTISARWKQLKSDIAGCTKFMKVGLQNEELLEKMFEDIHNTDANH |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0003820 | OsLima_09g0003820.01 | Chr09 | 6575605 | 6576146 | - | NAM | ||
| CDS seq | atggctcaaaatgtgccatcgaagggtgttaaaatacccattgattcttcttattggaatgactacaacactagagttgtgtgtgacatttttgttgatcaagtagctacagatttgggattggatgatgcaaggaaagcagtcacaactatttctgcacgctggaaacaactaaaatcagacatagcaggttgtaccaaatttatgaaggtcggcttgcaaaatgaggagttacttgagaagatgtttgaagacattcacaataccgatgctaatcattga
More
|
|||||||
| Protein seq | MAQNVPSKGVKIPIDSSYWNDYNTRVVCDIFVDQVATDLGLDDARKAVTTISARWKQLKSDIAGCTKFMKVGLQNEELLEKMFEDIHNTDANH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g10830 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0003730 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0003780 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001120 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0003880 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0101000 | RBH | 0 | 0.017138 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003790 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0100100 | RBH | 0 | 0.06414 | 0.0247885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0003840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0003770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003800 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003910 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003800 | RBH | 0.0 | 0.0 | 0.0 |
