Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0003120 | OGI:09015370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:5687532-5692085 | ||||||||
| Gene Symbol | RPM1, OsRPM1, - | ||||||||||
| DNA seq | aggGAAgagaagggaccttctcacgcctccgccggtcgctcggccggcgaccggcgaccaacctgccgattccccgataccctcgtgagtctatctcgtcgactctatcgtccgccgccatctcgaaggtatattaggtgcttcagatttgagggtgggggttgtttcagactcctgatttacacaaggtgcgatggtctctatgtgccactgccatgaacatggagcgatttccttgtgctgctccttccagAaaaataatagtgtgattcctgactgctgctgatgctgctgcttgtgtgatttcattcacttttggtgtctctatgctgcagtattgcagcccagtgttcacctgactcactttttattaggagattcacatttgttcatgtaatggaaacttgctatatactagtatgtttcaggagtaattggttcaaagctcacagtctacactcgaagtttgtgaccgaccagcaaacactggtcttgccgtttcgggttttcaatttagtactttactagaaaaaatacccgtgcgttgcaacgggtgaagtctattttaatcatattattgttatatggtttagttaagatgaaattcactgtggaagttcgcttggatatatatatttttagaaaattatgagttgcagttaggagtccgatcgcctcaagttagcatgcgagtttttttaaacaaatttcttatatgattccttatgtattaccaaaagtgaactacggagtatcttagaaaccgactcaaatacggatatgtatttccaaaagcaaacaaacttaaaaaccgactcatacacggatgacgtaccaaaataccggcaaaaacatcttcaatttttataatagtagagatattgcacttggccacctgacttgagatcaattatgttgaaccttttgtcaaaataatagctactgacatgagcaagtttgtctgttagttgactgacttactacagttttgtttcaacattactagaaaaggacttactacagttgactgacttatgctggtctggtcaagtctctggttttcagcttggcatacaagcagcttactttagagatataatcaaatcttttgttcacattgcagagagtgagtaggtaagatAGCAagaaaatgatgactaaaaatctcatatattctggcaaaatctcatatcttctatatgtgacatggacacaaggaggtaaggaacaagcatcatgggcataatataaccgtggaatgagctagggatctacctgctgaaattcaggagcagatctattctgactctgctgattggtccatatttcagtcctaccatacgcatatgtgagttccggctttactgtaactgcgattgcataaattctatcattctatcactagtcttgacaaccttctgatgtttgttcaggtatgtatgattttgatatcttttctctgtctttctctctcttcctctctcTCTGtctgtgtgtggcagtacatgtacaatttcatgataaagtaaatcttgatcatatgttgcattatgttcaatgattatgaaacttacagtcttgtactgcttcatttgggcctgattgagtttttacatgcaaatgattgatgttatcaagactaataatcagttcctcctcatggtaatgaagcattggtagaaataaggttaaaacattatgcttattgaacttgtattaagtacttttcatacttcatttgacatgtaaatttagaaagcatttgaattatgtttgattggcttgcaaataattcaatatggatttagtattatatctaatggttttctaaataacagcatgatttgttaactgcatacaagtcctaagtgcatcaagtcattttttgactcacaaattttatcaaatattctatggtggaagaatggcagaagccttggtatttatcgttcttcaaaagattggtgctgctttagggagagaagcactcaatgtcgtaggcacacagttacaaaaacagccaccaactttagttgatgttgagaataacatgaggcagcttaaaatcgagtttcatgtcatgaaagcttttctcactcagcagcaaatacatttctcacaagatagagcctacgatgcttggcttgatgaagtaaagaatgttgcacatgaagctgaggatgtgattgatgagtatgtctatctagctgggcagacagccaaagaaacaagcaagctaaagaaactgttccattgctccaaaactaccagtgattggcacattattgcaacacaactttcacaaatcaaatctcgccttcaaaacctcacaaacatgaaggctcgttatggcatttcagcaaatgacagtgaagatggtagcacttcaagtcatgagagcctaaaggagcttacatctgattcagcgtattttgatactgaagatgatatggttggcaataaagaagaatccgaaaaagttatgaaattattgatacatggcgaagaaacccgtacagtcatatccatttgtggaatgggtgggctaggaaaaacaactcttgcccgggccatctataaaaagaatgagattagaaagaactttgattgcttttcgtggattacaatctcccaaaactacaaggttgaagatttgtttagaagaatactcaaacaatttctggatatgaatgagaacattcctgatcagactgacattatgtatagggtaagcttggtagagaggctaagaaattacctgcaggacaaaaagtatttaattttcttggatgacatgtggagtcaagatgcttggattctattggatcgtgcttttgtgaaaaataaaaaaggaagtagaattgtcattacaactagaaatgaagatgtagcatcaattgcaaataacgggtgttcttttaagcctaagtacctaccatGgggggatgcatgggatctcttctgccgaaaagcgtttcacaggctagaccagaatggttgtcctcaagttgtgatgcactgggcagaaaaaattgtcagcaagtgtgaaggattgcctcttgctattgttgccattggaagtcttctatcctataagcaaatagatgaggcagagtggaagttgttctatggtcaacttaactggcaactaaccaagaaccaaaagctcaactatgtaacaagtattctcaatctcagcttcgattatctaccagcaaatctaaaaaattgcttcctttattgtagcatgttccctgaagaccatgagatcagaagaaaacagataattcggctatggatagctgaaggttttattgaagaaaggggagatattacattggaagaagtggctgaagactacctcaaagaacttgttcaacgttcacttcttcaagttgcttggacaaaagagtatgagagaccaaagtcatttcgcatgcatgatcttgtgagagacataacagtgacaaaatgcaaaactgaaaagttttctctcctagcagacaacacgtgtgttacAaaactgagtgatgaagcacgccgagtttccttagtgaagggcgggaaatcaatggaatctggccaaggttcaagaaagatcaggtcctttattttgttcgatgaggaagtgcaattctcatggatacaaaaggcaacttcgaatttcagattgctaagggtcttgtccttacgttatgcaaaaattgtgaagcttcctgatgctgtaacttatctgttcaatttgcattatcttgatttacgtcatacagaagttcaagagatccagcagtcaattgggaagctgaggaagctacaaactttggatcttagggagacatttgtagaacagctgccagaagaaataaagtttctaaccaagttgcggttcctatctgtcgatgttgactgtgatcctagcaacttacacagacactttcctcggttccaggccactcgaatttgttctgaattttatcttctgacggatttacaagtgctaggagacataaaagcaagcaaacatgttgttaccaatcttagtagattaacacagctacgatgtcttggcatctgcgacgtgaagcaggatcatatggagaaactatgtgtctccataaaaagtatgccaaatcttattaggttgggtatagtctcacatggtgaggatgaaatacttgatctacaacatttgggccatgttccagatttggaatggctgcacctacgagggaagttacatggagcaggtgctacatcaaatttgcagaatttcagtaaattaagatacctaagcatagggtggtccaggttgcaggttgatcctcttcctgcaatctcacatttgtcgaacctagcagaactttaccttcagaaagcctatgatggtttgttgatgacctttcaggctggctggcttccaaatcttagggaattgggtttagctggcatggaccagttacgttcaattgatattgaagctggcacaatgccaaacttgagcattttggtattatgtgggctgcagaatatgatatctgtgccagtaggatttaa
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| CDS seq | atggcagaagccttggtatttatcgttcttcaaaagattggtgctgctttagggagagaagcactcaatgtcgtaggcacacagttacaaaaacagccaccaactttagttgatgttgagaataacatgaggcagcttaaaatcgagtttcatgtcatgaaagcttttctcactcagcagcaaatacatttctcacaagatagagcctacgatgcttggcttgatgaagtaaagaatgttgcacatgaagctgaggatgtgattgatgagtatgtctatctagctgggcagacagccaaagaaacaagcaagctaaagaaactgttccattgctccaaaactaccagtgattggcacattattgcaacacaactttcacaaatcaaatctcgccttcaaaacctcacaaacatgaaggctcgttatggcatttcagcaaatgacagtgaagatggtagcacttcaagtcatgagagcctaaaggagcttacatctgattcagcgtattttgatactgaagatgatatggttggcaataaagaagaatccgaaaaagttatgaaattattgatacatggcgaagaaacccgtacagtcatatccatttgtggaatgggtgggctaggaaaaacaactcttgcccgggccatctataaaaagaatgagattagaaagaactttgattgcttttcgtggattacaatctcccaaaactacaaggttgaagatttgtttagaagaatactcaaacaatttctggatatgaatgagaacattcctgatcagactgacattatgtatagggtaagcttggtagagaggctaagaaattacctgcaggacaaaaagtatttaattttcttggatgacatgtggagtcaagatgcttggattctattggatcgtgcttttgtgaaaaataaaaaaggaagtagaattgtcattacaactagaaatgaagatgtagcatcaattgcaaataacgggtgttcttttaagcctaagtacctaccatGgggggatgcatgggatctcttctgccgaaaagcgtttcacaggctagaccagaatggttgtcctcaagttgtgatgcactgggcagaaaaaattgtcagcaagtgtgaaggattgcctcttgctattgttgccattggaagtcttctatcctataagcaaatagatgaggcagagtggaagttgttctatggtcaacttaactggcaactaaccaagaaccaaaagctcaactatgtaacaagtattctcaatctcagcttcgattatctaccagcaaatctaaaaaattgcttcctttattgtagcatgttccctgaagaccatgagatcagaagaaaacagataattcggctatggatagctgaaggttttattgaagaaaggggagatattacattggaagaagtggctgaagactacctcaaagaacttgttcaacgttcacttcttcaagttgcttggacaaaagagtatgagagaccaaagtcatttcgcatgcatgatcttgtgagagacataacagtgacaaaatgcaaaactgaaaagttttctctcctagcagacaacacgtgtgttacAaaactgagtgatgaagcacgccgagtttccttagtgaagggcgggaaatcaatggaatctggccaaggttcaagaaagatcaggtcctttattttgttcgatgaggaagtgcaattctcatggatacaaaaggcaacttcgaatttcagattgctaagggtcttgtccttacgttatgcaaaaattgtgaagcttcctgatgctgtaacttatctgttcaatttgcattatcttgatttacgtcatacagaagttcaagagatccagcagtcaattgggaagctgaggaagctacaaactttggatcttagggagacatttgtagaacagctgccagaagaaataaagtttctaaccaagttgcggttcctatctgtcgatgttgactgtgatcctagcaacttacacagacactttcctcggttccaggccactcgaatttgttctgaattttatcttctgacggatttacaagtgctaggagacataaaagcaagcaaacatgttgttaccaatcttagtagattaacacagctacgatgtcttggcatctgcgacgtgaagcaggatcatatggagaaactatgtgtctccataaaaagtatgccaaatcttattaggttgggtatagtctcacatggtgaggatgaaatacttgatctacaacatttgggccatgttccagatttggaatggctgcacctacgagggaagttacatggagcaggtgctacatcaaatttgcagaatttcagtaaattaagatacctaagcatagggtggtccaggttgcaggttgatcctcttcctgcaatctcacatttgtcgaacctagcagaactttaccttcagaaagcctatgatgaatatgatatctgtgccagtaggatttaa
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| Protein seq | MAEALVFIVLQKIGAALGREALNVVGTQLQKQPPTLVDVENNMRQLKIEFHVMKAFLTQQQIHFSQDRAYDAWLDEVKNVAHEAEDVIDEYVYLAGQTAKETSKLKKLFHCSKTTSDWHIIATQLSQIKSRLQNLTNMKARYGISANDSEDGSTSSHESLKELTSDSAYFDTEDDMVGNKEESEKVMKLLIHGEETRTVISICGMGGLGKTTLARAIYKKNEIRKNFDCFSWITISQNYKVEDLFRRILKQFLDMNENIPDQTDIMYRVSLVERLRNYLQDKKYLIFLDDMWSQDAWILLDRAFVKNKKGSRIVITTRNEDVASIANNGCSFKPKYLPWGDAWDLFCRKAFHRLDQNGCPQVVMHWAEKIVSKCEGLPLAIVAIGSLLSYKQIDEAEWKLFYGQLNWQLTKNQKLNYVTSILNLSFDYLPANLKNCFLYCSMFPEDHEIRRKQIIRLWIAEGFIEERGDITLEEVAEDYLKELVQRSLLQVAWTKEYERPKSFRMHDLVRDITVTKCKTEKFSLLADNTCVTKLSDEARRVSLVKGGKSMESGQGSRKIRSFILFDEEVQFSWIQKATSNFRLLRVLSLRYAKIVKLPDAVTYLFNLHYLDLRHTEVQEIQQSIGKLRKLQTLDLRETFVEQLPEEIKFLTKLRFLSVDVDCDPSNLHRHFPRFQATRICSEFYLLTDLQVLGDIKASKHVVTNLSRLTQLRCLGICDVKQDHMEKLCVSIKSMPNLIRLGIVSHGEDEILDLQHLGHVPDLEWLHLRGKLHGAGATSNLQNFSKLRYLSIGWSRLQVDPLPAISHLSNLAELYLQKAYDEYDICASRI |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0003120 | OsLima_09g0003120.01 | Chr09 | 5687532 | 5692085 | + | NAM | ||
| CDS seq | atggcagaagccttggtatttatcgttcttcaaaagattggtgctgctttagggagagaagcactcaatgtcgtaggcacacagttacaaaaacagccaccaactttagttgatgttgagaataacatgaggcagcttaaaatcgagtttcatgtcatgaaagcttttctcactcagcagcaaatacatttctcacaagatagagcctacgatgcttggcttgatgaagtaaagaatgttgcacatgaagctgaggatgtgattgatgagtatgtctatctagctgggcagacagccaaagaaacaagcaagctaaagaaactgttccattgctccaaaactaccagtgattggcacattattgcaacacaactttcacaaatcaaatctcgccttcaaaacctcacaaacatgaaggctcgttatggcatttcagcaaatgacagtgaagatggtagcacttcaagtcatgagagcctaaaggagcttacatctgattcagcgtattttgatactgaagatgatatggttggcaataaagaagaatccgaaaaagttatgaaattattgatacatggcgaagaaacccgtacagtcatatccatttgtggaatgggtgggctaggaaaaacaactcttgcccgggccatctataaaaagaatgagattagaaagaactttgattgcttttcgtggattacaatctcccaaaactacaaggttgaagatttgtttagaagaatactcaaacaatttctggatatgaatgagaacattcctgatcagactgacattatgtatagggtaagcttggtagagaggctaagaaattacctgcaggacaaaaagtatttaattttcttggatgacatgtggagtcaagatgcttggattctattggatcgtgcttttgtgaaaaataaaaaaggaagtagaattgtcattacaactagaaatgaagatgtagcatcaattgcaaataacgggtgttcttttaagcctaagtacctaccatGgggggatgcatgggatctcttctgccgaaaagcgtttcacaggctagaccagaatggttgtcctcaagttgtgatgcactgggcagaaaaaattgtcagcaagtgtgaaggattgcctcttgctattgttgccattggaagtcttctatcctataagcaaatagatgaggcagagtggaagttgttctatggtcaacttaactggcaactaaccaagaaccaaaagctcaactatgtaacaagtattctcaatctcagcttcgattatctaccagcaaatctaaaaaattgcttcctttattgtagcatgttccctgaagaccatgagatcagaagaaaacagataattcggctatggatagctgaaggttttattgaagaaaggggagatattacattggaagaagtggctgaagactacctcaaagaacttgttcaacgttcacttcttcaagttgcttggacaaaagagtatgagagaccaaagtcatttcgcatgcatgatcttgtgagagacataacagtgacaaaatgcaaaactgaaaagttttctctcctagcagacaacacgtgtgttacAaaactgagtgatgaagcacgccgagtttccttagtgaagggcgggaaatcaatggaatctggccaaggttcaagaaagatcaggtcctttattttgttcgatgaggaagtgcaattctcatggatacaaaaggcaacttcgaatttcagattgctaagggtcttgtccttacgttatgcaaaaattgtgaagcttcctgatgctgtaacttatctgttcaatttgcattatcttgatttacgtcatacagaagttcaagagatccagcagtcaattgggaagctgaggaagctacaaactttggatcttagggagacatttgtagaacagctgccagaagaaataaagtttctaaccaagttgcggttcctatctgtcgatgttgactgtgatcctagcaacttacacagacactttcctcggttccaggccactcgaatttgttctgaattttatcttctgacggatttacaagtgctaggagacataaaagcaagcaaacatgttgttaccaatcttagtagattaacacagctacgatgtcttggcatctgcgacgtgaagcaggatcatatggagaaactatgtgtctccataaaaagtatgccaaatcttattaggttgggtatagtctcacatggtgaggatgaaatacttgatctacaacatttgggccatgttccagatttggaatggctgcacctacgagggaagttacatggagcaggtgctacatcaaatttgcagaatttcagtaaattaagatacctaagcatagggtggtccaggttgcaggttgatcctcttcctgcaatctcacatttgtcgaacctagcagaactttaccttcagaaagcctatgatgaatatgatatctgtgccagtaggatttaa
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| Protein seq | MAEALVFIVLQKIGAALGREALNVVGTQLQKQPPTLVDVENNMRQLKIEFHVMKAFLTQQQIHFSQDRAYDAWLDEVKNVAHEAEDVIDEYVYLAGQTAKETSKLKKLFHCSKTTSDWHIIATQLSQIKSRLQNLTNMKARYGISANDSEDGSTSSHESLKELTSDSAYFDTEDDMVGNKEESEKVMKLLIHGEETRTVISICGMGGLGKTTLARAIYKKNEIRKNFDCFSWITISQNYKVEDLFRRILKQFLDMNENIPDQTDIMYRVSLVERLRNYLQDKKYLIFLDDMWSQDAWILLDRAFVKNKKGSRIVITTRNEDVASIANNGCSFKPKYLPWGDAWDLFCRKAFHRLDQNGCPQVVMHWAEKIVSKCEGLPLAIVAIGSLLSYKQIDEAEWKLFYGQLNWQLTKNQKLNYVTSILNLSFDYLPANLKNCFLYCSMFPEDHEIRRKQIIRLWIAEGFIEERGDITLEEVAEDYLKELVQRSLLQVAWTKEYERPKSFRMHDLVRDITVTKCKTEKFSLLADNTCVTKLSDEARRVSLVKGGKSMESGQGSRKIRSFILFDEEVQFSWIQKATSNFRLLRVLSLRYAKIVKLPDAVTYLFNLHYLDLRHTEVQEIQQSIGKLRKLQTLDLRETFVEQLPEEIKFLTKLRFLSVDVDCDPSNLHRHFPRFQATRICSEFYLLTDLQVLGDIKASKHVVTNLSRLTQLRCLGICDVKQDHMEKLCVSIKSMPNLIRLGIVSHGEDEILDLQHLGHVPDLEWLHLRGKLHGAGATSNLQNFSKLRYLSIGWSRLQVDPLPAISHLSNLAELYLQKAYDEYDICASRI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.042999 | 0.085248 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0267800 | RBH | 0.205153 | 0.213254 | 0.341371 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g09490 | RBH | 0.154023 | 0.229857 | 0.097559 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0267800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0003110 | RBH | 0.247283 | 2.441939 | 0.951202 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0003110 | RBH | 0.218136 | 1.048699 | 1.183370 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0003150 | RBH | 0.257032 | 0.0 | 2.301605 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0002990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0003190 | RBH | 0.267182 | 0.000000 | 1.396171 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0083600 | RBH | 0.2248375 | 0.4341885 | 0.059001 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003090 | RBH | 0.067881 | 0.000000 | 0.043305 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0086900 | RBH | 0.5288235 | 0.766572 | 0.9008785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0003260 | RBH | 0.090739 | 0.044362 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0003140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0003150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003060 | RBH | 0.0 | 0.0 | 0.074983 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003290 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003180 | RBH | 0.133272 | 0.0 | 0.0 |
