Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0021140 | OGI:08073370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:26402720-26404680 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacaccttaaacatcttgcgtgcaacccacagcgacatctgaagacccattgccgcaaaaaagatagatatcaccgaacgaacactcgaaaaaaaaacccgttatggtgaacgcatgtcgatttgtcctgggttcgataagccaattaggatatcctcaaacaccgaaaaggcgagaacagacaaacaatttagggactagagagtgaataaacttgtggtacaaagtagtaagaaggagaaagatgtatacatatagagataggggtaataaatttattttgagaactgattggtgtgtcatgaattaagccccgctatcgtcctaggcctattccatggtacgcaaaacaccacccgaaatgcagagaatgttctctgatcatgaactacctcatatgaatgaaattcgtgcatttcaatggagcgcaatctttcagaaacacttctacatttatgctctccgctttcatgtctctgactctgaatgtccatgaaatcgcactgcaggtgagaacgaaattcaccatgtacgggaggatggtgtacgtccacatggacgacgtcgcgagctgccgcatcctgctctacgagacaccccgtgcagccgggaggtacatctgcaactctgctgtcctgaacatcaatgagctgctcgtcaccttgctgttcttcttcttctgtgattcgttggttgtatttgtgttactgaaaatggcattcaggcattgctccgactgtatatttctgtgtagtttactgtgcgtttacggggtaacaggtgatggcatgaagttcagagatgtggaggagaatctataacgatagatcttttataggaacgaactatattatatatcatccttgttgcatgtcacctaaatgattatgaaaaaaattaaaaaaatttgagaagatgtattagaatgtggtatatcactctacaagcatgcaagttcaaattcaatttcgtgtagaaattgaatttgaatttgcatgtttgtggagcgatatatcacatgttaatatatcttctttttttttcaaattttttcataactatttgggtgacaggcaaacaacaaagggatatcccctcgagggataaaaatccactcccaaaatagaacaagaagatctctggcttcttgtataagaataagatgttaacaagtactccctccatccaaaaaaaacccaacctaagatgggatgggagatattctagtacaacgtatgtggacagacatatgtccagatgcattgtactagaatgtgtcccatcccatcctaggttgggtttttttttttgggacggagggagtatctatctatatctgtaaacgctcaagcgaccagaacactttaatctcttggatgaccgaagggaagttatgccagagccaaaagtagccatgtgtggccaatgctttgatgttcttcttcgccaagaagaagtcgagacacttgctcttcaactccgagcagccgcacatcttggcatagcccagtgtcctcgccaccgtctccaccgacaagctctcctcaagttttcgggcgcacatgagcttcagcctgtcgagcttatactcgtgcgccgccgcgagcagccggtggagcatgtcggtgttggcgtcgctgctgtcaggcgacgacgagtgggctcccgccggcaggaagtcgccggtgtacatgaagtgcagcaaagcttcgaacatcgccggcttgatgtcgttcagggtgatgttgcaggctgctgcctccgccgtggagccgaggagcagagccttgaagaccggcgagcacgcggcaagcagggcccggtgcgcgtggaacgtctcgccaccgacgaagaagaacacgtcggagccgttcaagtggtccacccggcacatgtgtatcgcggccgctccatcccccaaccctcgcgcgcgccgccggcgccgtgccgacgaggccat
More
|
||||||||||
| CDS seq | atggcctcgtcggcacggcgccggcggcgcgcgcgagggttgggggatggagcggccgcgatacacatgtgccgggtggaccacttgaacggctccgacgtgttcttcttcgtcggtggcgagacgttccacgcgcaccgggccctgcttgccgcgtgctcgccggtcttcaaggctctgctcctcggctccacggcggaggcagcagcctgcaacatcaccctgaacgacatcaagccggcgatgttcgaagctttgctgcacttcatgtacaccggcgacttcctgccggcgggagcccactcgtcgtcgcctgacagcagcgacgccaacaccgacatgctccaccggctgctcgcggcggcgcacgagtataagctcgacaggctgaagctcatgtgcgcccgaaaacttgaggagagcttgtcggtggagacggtggcgaggacactgggctatgccaagatgtgcggctgctcggagttgaagagcaataacacaaatacaaccaacgaatcacagaagaagaagaacagcaagatgtcgctgtgggttgcacgcaagatgtttaaggtgtag
More
|
||||||||||
| Protein seq | MASSARRRRRARGLGDGAAAIHMCRVDHLNGSDVFFFVGGETFHAHRALLAACSPVFKALLLGSTAEAAACNITLNDIKPAMFEALLHFMYTGDFLPAGAHSSSPDSSDANTDMLHRLLAAAHEYKLDRLKLMCARKLEESLSVETVARTLGYAKMCGCSELKSNNTNTTNESQKKKNSKMSLWVARKMFKV |
||||||||||
| Function | BTB/POZ and MATH domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8L765] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0021140 | OsLima_08g0021140.01 | Chr08 | 26402720 | 26404680 | - | NAM | ||
| CDS seq | atggcctcgtcggcacggcgccggcggcgcgcgcgagggttgggggatggagcggccgcgatacacatgtgccgggtggaccacttgaacggctccgacgtgttcttcttcgtcggtggcgagacgttccacgcgcaccgggccctgcttgccgcgtgctcgccggtcttcaaggctctgctcctcggctccacggcggaggcagcagcctgcaacatcaccctgaacgacatcaagccggcgatgttcgaagctttgctgcacttcatgtacaccggcgacttcctgccggcgggagcccactcgtcgtcgcctgacagcagcgacgccaacaccgacatgctccaccggctgctcgcggcggcgcacgagtataagctcgacaggctgaagctcatgtgcgcccgaaaacttgaggagagcttgtcggtggagacggtggcgaggacactgggctatgccaagatgtgcggctgctcggagttgaagagcaataacacaaatacaaccaacgaatcacagaagaagaagaacagcaagatgtcgctgtgggttgcacgcaagatgtttaaggtgtag
More
|
|||||||
| Protein seq | MASSARRRRRARGLGDGAAAIHMCRVDHLNGSDVFFFVGGETFHAHRALLAACSPVFKALLLGSTAEAAACNITLNDIKPAMFEALLHFMYTGDFLPAGAHSSSPDSSDANTDMLHRLLAAAHEYKLDRLKLMCARKLEESLSVETVARTLGYAKMCGCSELKSNNTNTTNESQKKKNSKMSLWVARKMFKV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0516200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40460 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0516200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022640 | SBH | 0.000000 | 0.198087 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022520 | SBH | 0.000000 | 0.094169 | 0.028506 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022420 | SBH | 0.058541 | 0.230410 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0022040 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022410 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0415000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0022300 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0436400 | SBH | 0 | 0.0190255 | 0.0083255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021660 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021270 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022610 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021980 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G022150 | RBH | 0.0 | 0.000000 | 0.089066 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0022330 | SBH | 0.000000 | 0.000000 | 0.000000 |
