Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0020890 | OGI:08072970 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:26201876-26205438 | ||||||||
| Gene Symbol | PI55-1, pi55-1, pi55(t), OsIRL4 | ||||||||||
| DNA seq | cctttctacagtatctctttattaaaggagaacacacgcttgcatagttgcattgctcaattagccacaggagtctttgaattctccattctgcctttcaataaagacaatacaccatttctacaagaaaaaatcatatagaaacgaaacaacataagcaaagtgccgtgctttctaattgcacccgccaagatggtacactcaaatacaagttgcaaaaaccaaaatccagaatgcacataacagtaagaattcaaaaagagtacgcgctaacagagctaaaccaccatattctgaaggctgactgtactgaagaagccccaagtcatgagcagaaggttaagctatgcgacatcttgtatcctgcagaagaatttaacagatacagttgaatatattgatctccaaaagaatcaatcagcaaatcaaaacaggaaaggacagcaatcttgattatggttgtattaacacttttcttatggatagcctggataggttgcagataggcctatgggattcaacagtatagtataaccttctgttcacctagccagaatcataagaaattacacagcttgctgattctttggtctaaggttattcaaagctgaaatatcatagtagaaaggagagcaaataagcctgatttgatctaagcatatctctgttctacaacagaaacctgctgccccatcaccaaagagcaggctctgggcaaatcatataaccggtactgatgacagtaagcaactgaagaggagaacaatcgttcactgctcacctagcctccatatatcatgttgcattgtctatccggtcatgctttcttttgttaggcctggagaaaaagcaaaagtggacccaggtcttctttggcttcattggctctgactttgtagttctcttggaagcatcagacatgtattgaacgacagcctacacaacataaaaaaagaagtcactaaactacataaagaatgatgaccaatatataactcaaggaaaattagtgagaaatacctgagctccctttaaagctatatcccttggtggcacttgtaaagggttctcttctgcacggagcacacggagatgctttaggtttccaaaagaatccggaagaaccctaatctgattgttgctcatatccaactcttccagcatctcaaggttgccaatagagcgaggcagatattgtaggtcagcaaaattgttcccaacgttcagtttaatgagagaggtagcaaagcagaagttctcagggattgactcgagctcgttgaagctcacatcgacctccttcagtttagtgagagaggccattgtagttggaaggctcctgagattgttatatctcacggagaggatctctagagactctagctttccaaccgcctcaggaagagcctttaggtgattataacctgcctgcagttcaaccagtgaaacacagtgaccaatggtgtaaggcaactcatcaaggtcatttgtctcgacgattagcttcttcagtcgtgtaaggcttcctattgaatcagggagtgacgaaagcccgttggaacccacatcaagctcctcaagatttaacagcctgccaatgctagaaggcaatgacgagagctgattacctctcatgttgaggtaaatcaagctgcggagatccccaattgattcagggagctgactgattcgattagcatgaatatcaagcttggccaaagaaaagagcttcccgattgcgtctggcaaagccagcagccggttttccgaaatatcaagggtaactagcccagtgagctttccaattgaatcaggtagccactcaatctgcgccatgagtttgccttggaggttaagatcccgagcacctttcttcgcagatacctcaatcatgctagctagcttaataaggctcaatttctcattatcatcccctacaattccaatcatcaaccaatgaatcagtccatacacaaacaattccaactctaatatttaacatgttcaattaattatccaattaacaaacattgtctagtttgatagctaagaaacattcaattttgtaggcatagagtgtataaacaatcgccgcacatgcttccaacgtatgacttttcactcataaaacatctaataattcccaagaaagtacaccaaaccaattcatttcaccacaattctggcaaacagaagcaattcaaaagcagaaagtgctctcaccataattgccatccgctcgaaccgcgacggaattcgcttcgacgggtcctcgcggtagatgggaattcgtcgccgcagctccaccatcccacattgctgccttcgccttcctgacatagctgtcgtccatggagacgcgccccgtgctcgtgctcgtccccgccaccctgctcgccgtgaacccattggtgcccgacgaggcgtggcgctcggcgttgcccacggcggacgacgacgacgagccggcggcagcggtgctggtggtggtggtggcggcagcgggtgcggcgatgcgcggcgcggcgcgggtggaggtggaggggaggcactgggaggcgcgctggatgaggtcgtcgaagagggtgtggagcgcctcgagctcgaggaggcgcgcggcgtcgcgcttctgctcgcggcactggaacccggcgagcgcgcggtgcatctcctgggcgacgcagaggagctcgtcgggcacggcgggggacctgcgcagccgcgccacggcgtcggcgcgcgcccgctcctcccggtcggccgccgccgccagcgcctccgccgcctccacctcctccaccgccggccgcgccggcagcgaccggtgcagccgcatcacctccccgaccaacccatccaccgtgtcgaacaccccggcctccacccccacggcgcccatttcctcaactcagcaaagcggaatccgatctccttcctcaccgcggcgacgaacacccgcaaggggatctccctctccccctctttatgctcgaatccgcctctcgccgctgctctttctcgccatcgccaactgctcgtcacgtgtcgcccgtggtcacctcggatgccttgaggataagaagaaccacaggtgtgtgacgcagatcaaagcttttggaccccagaaaaaagaagaagaagaagaaagcgagcaacaactttttctgcaacaccagtaactctagatcgatccaagaacgaaagaattgcctccccaaatgcgaatctaccaacctcaagaactcactcacaaacactcccccaaccaagaatcaccaaaaaaggagaacaaaacacacacaaatgacaagatcctgtcgaattggagcaaaatttgcccctctctctctctctctctttctttctccgagctttgtgccgtgggttgttcttgctgttcttgggatggggaaattggaaaaaaaaaaagaaaaaccagaagcacaaagctccaatcttcttccacgttagaacaacgcaacggatcggaatggaggatgcagcagcagcttgccttgggatgagagagagagagagagatggaaggatggatggacagtgct
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| CDS seq | atgggcgccgtgggggtggaggccggggtgttcgacacggtggatgggttggtcggggaggtgatgcggctgcaccggtcgctgccggcgcggccggcggtggaggaggtggaggcggcggaggcgctggcggcggcggccgaccgggaggagcgggcgcgcgccgacgccgtggcgcggctgcgcaggtcccccgccgtgcccgacgagctcctctgcgtcgcccaggagatgcaccgcgcgctcgccgggttccagtgccgcgagcagaagcgcgacgccgcgcgcctcctcgagctcgaggcgctccacaccctcttcgacgacctcatccagcgcgcctcccagtgcctcccctccacctccacccgcgccgcgccgcgcatcgccgcacccgctgccgccaccaccaccaccagcaccgctgccgccggctcgtcgtcgtcgtccgccgtgggcaacgccgagcgccacgcctcgtcgggcaccaatgggttcacggcgagcagggtggcggggacgagcacgagcacggggcgcgtctccatggacgacagctatgtcaggaaggcgaaggcagcaatgtgggatggtggagctgcggcgacgaattcccatctaccgcgaggacccgtcgaagcgaattccgtcgcggttcgagcggatggcaattatggggatgataatgagaaattgagccttattaagctagctagcatgattgaggtatctgcgaagaaaggtgctcgggatcttaacctccaaggcaaactcatggcgcagattgagtggctacctgattcaattggaaagctcactgggctagttacccttgatatttcggaaaaccggctgctggctttgccagacgcaatcgggaagctcttttctttggccaagcttgatattcatgctaatcgaatcagtcagctccctgaatcaattggggatctccgcagcttgatttacctcaacatgagaggtaatcagctctcgtcattgccttctagcattggcaggctgttaaatcttgaggagcttgatgtgggttccaacgggctttcgtcactccctgattcaataggaagccttacacgactgaagaagctaatcgtcgagacaaatgaccttgatgagttgccttacaccattggtcactgtgtttcactggttgaactgcaggcaggttataatcacctaaaggctcttcctgaggcggttggaaagctagagtctctagagatcctctccgtgagatataacaatctcaggagccttccaactacaatggcctctctcactaaactgaaggaggtcgatgtgagcttcaacgagctcgagtcaatccctgagaacttctgctttgctacctctctcattaaactgaacgttgggaacaattttgctgacctacaatatctgcctcgctctattggcaaccttgagatgctggaagagttggatatgagcaacaatcagattagggttcttccggattcttttggaaacctaaagcatctccgtgtgctccgtgcagaagagaaccctttacaagtgccaccaagggatatagctttaaagggagctcaggctgtcgttcaatacatgtctgatgcttccaagagaactacaaagtcagagccaatgaagccaaagaagacctgggtccacttttgctttttctccaggcctaacaaaagaaagcatgaccggatagacaatgcaacatga
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| Protein seq | MGAVGVEAGVFDTVDGLVGEVMRLHRSLPARPAVEEVEAAEALAAAADREERARADAVARLRRSPAVPDELLCVAQEMHRALAGFQCREQKRDAARLLELEALHTLFDDLIQRASQCLPSTSTRAAPRIAAPAAATTTTSTAAAGSSSSSAVGNAERHASSGTNGFTASRVAGTSTSTGRVSMDDSYVRKAKAAMWDGGAAATNSHLPRGPVEANSVAVRADGNYGDDNEKLSLIKLASMIEVSAKKGARDLNLQGKLMAQIEWLPDSIGKLTGLVTLDISENRLLALPDAIGKLFSLAKLDIHANRISQLPESIGDLRSLIYLNMRGNQLSSLPSSIGRLLNLEELDVGSNGLSSLPDSIGSLTRLKKLIVETNDLDELPYTIGHCVSLVELQAGYNHLKALPEAVGKLESLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFATSLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPLQVPPRDIALKGAQAVVQYMSDASKRTTKSEPMKPKKTWVHFCFFSRPNKRKHDRIDNAT |
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| Function | Plant intracellular Ras-group-related LRR protein 4 [UniProtKB/Swiss-Prot:Q6Z8P4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0020890 | OsLima_08g0020890.01 | Chr08 | 26201876 | 26205438 | - | NAM | ||
| CDS seq | atgggcgccgtgggggtggaggccggggtgttcgacacggtggatgggttggtcggggaggtgatgcggctgcaccggtcgctgccggcgcggccggcggtggaggaggtggaggcggcggaggcgctggcggcggcggccgaccgggaggagcgggcgcgcgccgacgccgtggcgcggctgcgcaggtcccccgccgtgcccgacgagctcctctgcgtcgcccaggagatgcaccgcgcgctcgccgggttccagtgccgcgagcagaagcgcgacgccgcgcgcctcctcgagctcgaggcgctccacaccctcttcgacgacctcatccagcgcgcctcccagtgcctcccctccacctccacccgcgccgcgccgcgcatcgccgcacccgctgccgccaccaccaccaccagcaccgctgccgccggctcgtcgtcgtcgtccgccgtgggcaacgccgagcgccacgcctcgtcgggcaccaatgggttcacggcgagcagggtggcggggacgagcacgagcacggggcgcgtctccatggacgacagctatgtcaggaaggcgaaggcagcaatgtgggatggtggagctgcggcgacgaattcccatctaccgcgaggacccgtcgaagcgaattccgtcgcggttcgagcggatggcaattatggggatgataatgagaaattgagccttattaagctagctagcatgattgaggtatctgcgaagaaaggtgctcgggatcttaacctccaaggcaaactcatggcgcagattgagtggctacctgattcaattggaaagctcactgggctagttacccttgatatttcggaaaaccggctgctggctttgccagacgcaatcgggaagctcttttctttggccaagcttgatattcatgctaatcgaatcagtcagctccctgaatcaattggggatctccgcagcttgatttacctcaacatgagaggtaatcagctctcgtcattgccttctagcattggcaggctgttaaatcttgaggagcttgatgtgggttccaacgggctttcgtcactccctgattcaataggaagccttacacgactgaagaagctaatcgtcgagacaaatgaccttgatgagttgccttacaccattggtcactgtgtttcactggttgaactgcaggcaggttataatcacctaaaggctcttcctgaggcggttggaaagctagagtctctagagatcctctccgtgagatataacaatctcaggagccttccaactacaatggcctctctcactaaactgaaggaggtcgatgtgagcttcaacgagctcgagtcaatccctgagaacttctgctttgctacctctctcattaaactgaacgttgggaacaattttgctgacctacaatatctgcctcgctctattggcaaccttgagatgctggaagagttggatatgagcaacaatcagattagggttcttccggattcttttggaaacctaaagcatctccgtgtgctccgtgcagaagagaaccctttacaagtgccaccaagggatatagctttaaagggagctcaggctgtcgttcaatacatgtctgatgcttccaagagaactacaaagtcagagccaatgaagccaaagaagacctgggtccacttttgctttttctccaggcctaacaaaagaaagcatgaccggatagacaatgcaacatga
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| Protein seq | MGAVGVEAGVFDTVDGLVGEVMRLHRSLPARPAVEEVEAAEALAAAADREERARADAVARLRRSPAVPDELLCVAQEMHRALAGFQCREQKRDAARLLELEALHTLFDDLIQRASQCLPSTSTRAAPRIAAPAAATTTTSTAAAGSSSSSAVGNAERHASSGTNGFTASRVAGTSTSTGRVSMDDSYVRKAKAAMWDGGAAATNSHLPRGPVEANSVAVRADGNYGDDNEKLSLIKLASMIEVSAKKGARDLNLQGKLMAQIEWLPDSIGKLTGLVTLDISENRLLALPDAIGKLFSLAKLDIHANRISQLPESIGDLRSLIYLNMRGNQLSSLPSSIGRLLNLEELDVGSNGLSSLPDSIGSLTRLKKLIVETNDLDELPYTIGHCVSLVELQAGYNHLKALPEAVGKLESLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFATSLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPLQVPPRDIALKGAQAVVQYMSDASKRTTKSEPMKPKKTWVHFCFFSRPNKRKHDRIDNAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.164077 | 0.087669 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0511700 | RBH | 2.153203 | 0.758717 | 4.771375 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40090 | RBH | 1.462475 | 0.863461 | 1.403451 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0511700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021850 | RBH | 0.674724 | 6.599193 | 5.184623 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021740 | RBH | 0.297859 | 0.770347 | 2.951717 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021620 | RBH | 0.852486 | 5.050380 | 10.148176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021810 | RBH | 0.043188 | 0.504454 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0021670 | RBH | 5.374839 | 10.794127 | 15.865081 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0405800 | RBH | 10.782529 | 12.824387 | 22.6650085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021550 | RBH | 0.139610 | 0.807660 | 1.722041 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0425500 | RBH | 13.8699315 | 7.695297 | 26.293593 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0014140 | SBH | 0.0 | 0.325756 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021200 | RBH | 0.057740 | 9.632220 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021010 | RBH | 3.369764 | 13.204638 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021850 | RBH | 1.245808 | 1.222389 | 1.272581 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021220 | RBH | 0.185822 | 5.142744 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021360 | RBH | 0.139719 | 5.345693 | 3.543197 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021530 | RBH | 1.594687 | 11.177722 | 6.025936 |
