Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0020500 | OGI:08071910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:25864562-25867615 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgttcgttccggaatcctctcgaccgtcgggaaacttgagccttcagcttcctccttcctcccccatcgccaatggcatccccttccctcgctgcagcaaatacacctcgcgagatcctcctcctcctcctcctcccgcgtcgaagcgaaatcgaagcacacactcctcctttcacctccccttcacttctcctcgccgcccaagggaagggcaaaggtgggggaatcttagcttacataggacccaggggggcgtcagcgtcgtctctgcttctccttgtcttgtttgcaggaattgaggggaattctttcttttttcttcgctggatttggtttggttggttcgctggtatgtgcctctgatccctcgtttatagtggctgtggttctaagctggtgtatgtgtataccatcgttgatatgagagattgtgcgcggagaatttggtgctgcgtacctgaatgttttgtttgtgcagcattttgatattccgttgcttttggtaggtcggatatgtttatttgttagtaatactaatagtttcgcgttgtttatcgttagcaaaagccatgtagtatcagttcacgacttcgttattttcgattgtacgctttgtcatcgcaaaatcttttgtatggattttttggctgaacaacatcgtgtggagtagtgctgttgctgaactgattgatctactttagttggaagaccctaatcttgtgtttctcatattaatgcaataaaacgggtgtcattttttttttgaaaaacaaaacaaaagcaagttggaaatgaaaatgtcaccattttgcatgagttttgacattgaatttggtcattcgtgtacagctgatattggttggaccggatgcggctctactcatctgcagtcaatttgcggcgaccttctaaacgtaccatgtattcccaatctagtcagtttcatggaggattaacacagagtttgggattacggaagtgttcacgctcgcagacatccagttataatgtgaagctgggtcttgtcgattgttctctacataggaatataaaatcttctgaccggcctagtctgaggtactttgttagcttagtgggtcggcagttccgttgtggactgtcaggcaaagaaggtagtttaaatatgaagctcgacatgccttcccgtgacaatttctctagtatgagctggaaatggagaggtttgcatcaaaaaataggaggtacaaccagtggactttgcttaggttttgcagtttctggaatagcaaatgctgaggttcctgtggagataagcatcagcaattcagcagcatctaccagttcaactcatggcaaagaagtctatacggattattcagtaacaggtgggtattcatttttttaggtttagcaattttgcttgttgggggttaatttggatcttgagaatagtagtatgtgataacatgtgatttatttacaaaacctctagggattcctggagatggaagatgcttattccgctctgtgattcatggggcatgcattagggcaggaagacccataccaaatgaagatcttcagagaaagctagctgacgaattgagggcaatggtatagcttgtttcttgtgtatagtcatacttttggttatttgtgttgtttcttttctaagctcagatataatttaattatttctaggttgctgatgaatttgttaagaggcgggaagaatcggaatggttagttgatttgataccctttctcatcatttttaatgctgctgtaagttgttatcatcaatatatttcgattactgtgttttgatgtaataccgatttgcaggtttattgagggagatttcgacacatatgtgtcccatattaggcatccacatgtgtggggcggtgaaccagaattattcatggcttcacatgttcttgagtaagtagtagggtctattatgtgttctagttacattgatttcaaagatgtcatagttcatagctatcactgtcggtaatgacaccaaaatgttatatttgtgcttgccagctaaaattttatatcgttcaggtattatagagttccatataacacaacatacatatatataatgaaaagaaaaagaaacctttgtttttactgtagtgtgagatgtctgtgtgaacagaaaagggatttgatcaagtcaaatcattttgagacctaaattccaacaatatcaccatgagacaatgaattggatttttttaatcgaattgattaaatttagggtagttggatttttaaaaccaagtacacccttgtattggtggaatgaaaatgtagctatcaggtagcatagaagtatgaacactgctttcagctgttgtcttatagagtaatagagatctaacatcatattctgttcataggatgccaataacggtttacatgcatgatgaagatgctggtggtttaatagcaattgctgaatatggccaacaatatggaaaagaagatccaatccaagttctatatgatggttttgctcattatgatgctgtacagattccagcaaaaaaatgctccagagagatgacttgtgaatttttgaaatttcaaggttcaaatggtaggatttggtcttaacccatttccttcctttccatgtatttgcaagtatcgaagttctggtggttgacattgacaatatcgcgccggtgagagtgaagactagctgtgatctagacattgcttttcttgttaaaagaagcaaaatccaccactctgatcaaccttgtctatattcttcaaatggctttgtgttcaggatccaggcataaactcctgaatcgagatggaaatagatgacaaggcatatgtttctcgatgtgaatctgctgaaagagccgaaactgaattgttgttatccacactctagtaatgcttctggtaaaacgtgagacaaggcagcataagcttatggatgattgaatcctgcttggttagttaatacactgattgtaggcacatgtaagggtgtaagcctgtaacttactgcaatatcctgcatactaatgtgatgac
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| CDS seq | atgcggctctactcatctgcagtcaatttgcggcgaccttctaaacgtaccatgtattcccaatctagtcagtttcatggaggattaacacagagtttgggattacggaagtgttcacgctcgcagacatccagttataatgtgaagctgggtcttgtcgattgttctctacataggaatataaaatcttctgaccggcctagtctgaggtactttgttagcttagtgggtcggcagttccgttgtggactgtcaggcaaagaaggtagtttaaatatgaagctcgacatgccttcccgtgacaatttctctagtatgagctggaaatggagaggtttgcatcaaaaaataggaggtacaaccagtggactttgcttaggttttgcagtttctggaatagcaaatgctgaggttcctgtggagataagcatcagcaattcagcagcatctaccagttcaactcatggcaaagaagtctatacggattattcagtaacagggattcctggagatggaagatgcttattccgctctgtgattcatggggcatgcattagggcaggaagacccataccaaatgaagatcttcagagaaagctagctgacgaattgagggcaatggttgctgatgaatttgttaagaggcgggaagaatcggaatggtttattgagggagatttcgacacatatgtgtcccatattaggcatccacatgtgtggggcggtgaaccagaattattcatggcttcacatgttcttgagatgccaataacggtttacatgcatgatgaagatgctggtggtttaatagcaattgctgaatatggccaacaatatggaaaagaagatccaatccaagttctatatgatggttttgctcattatgatgctgtacagattccagcaaaaaaatgctccagagagatgacttgtgaatttttgaaatttcaaggttcaaatggtaggatttggtcttaa
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| Protein seq | MRLYSSAVNLRRPSKRTMYSQSSQFHGGLTQSLGLRKCSRSQTSSYNVKLGLVDCSLHRNIKSSDRPSLRYFVSLVGRQFRCGLSGKEGSLNMKLDMPSRDNFSSMSWKWRGLHQKIGGTTSGLCLGFAVSGIANAEVPVEISISNSAASTSSTHGKEVYTDYSVTGIPGDGRCLFRSVIHGACIRAGRPIPNEDLQRKLADELRAMVADEFVKRREESEWFIEGDFDTYVSHIRHPHVWGGEPELFMASHVLEMPITVYMHDEDAGGLIAIAEYGQQYGKEDPIQVLYDGFAHYDAVQIPAKKCSREMTCEFLKFQGSNGRIWS |
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| Function | OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 [UniProtKB/Swiss-Prot:Q8LBZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0020500 | OsLima_08g0020500.01 | Chr08 | 25864562 | 25867615 | + | NAM | ||
| CDS seq | atgcggctctactcatctgcagtcaatttgcggcgaccttctaaacgtaccatgtattcccaatctagtcagtttcatggaggattaacacagagtttgggattacggaagtgttcacgctcgcagacatccagttataatgtgaagctgggtcttgtcgattgttctctacataggaatataaaatcttctgaccggcctagtctgaggtactttgttagcttagtgggtcggcagttccgttgtggactgtcaggcaaagaaggtagtttaaatatgaagctcgacatgccttcccgtgacaatttctctagtatgagctggaaatggagaggtttgcatcaaaaaataggaggtacaaccagtggactttgcttaggttttgcagtttctggaatagcaaatgctgaggttcctgtggagataagcatcagcaattcagcagcatctaccagttcaactcatggcaaagaagtctatacggattattcagtaacagggattcctggagatggaagatgcttattccgctctgtgattcatggggcatgcattagggcaggaagacccataccaaatgaagatcttcagagaaagctagctgacgaattgagggcaatggttgctgatgaatttgttaagaggcgggaagaatcggaatggtttattgagggagatttcgacacatatgtgtcccatattaggcatccacatgtgtggggcggtgaaccagaattattcatggcttcacatgttcttgagatgccaataacggtttacatgcatgatgaagatgctggtggtttaatagcaattgctgaatatggccaacaatatggaaaagaagatccaatccaagttctatatgatggttttgctcattatgatgctgtacagattccagcaaaaaaatgctccagagagatgacttgtgaatttttgaaatttcaaggttcaaatggtaggatttggtcttaa
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| Protein seq | MRLYSSAVNLRRPSKRTMYSQSSQFHGGLTQSLGLRKCSRSQTSSYNVKLGLVDCSLHRNIKSSDRPSLRYFVSLVGRQFRCGLSGKEGSLNMKLDMPSRDNFSSMSWKWRGLHQKIGGTTSGLCLGFAVSGIANAEVPVEISISNSAASTSSTHGKEVYTDYSVTGIPGDGRCLFRSVIHGACIRAGRPIPNEDLQRKLADELRAMVADEFVKRREESEWFIEGDFDTYVSHIRHPHVWGGEPELFMASHVLEMPITVYMHDEDAGGLIAIAEYGQQYGKEDPIQVLYDGFAHYDAVQIPAKKCSREMTCEFLKFQGSNGRIWS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0506000 | RBH | 0.136241 | 0.293779 | 1.244801 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39560 | RBH | 0.091775 | 0.196822 | 0.320149 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0506000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021440 | RBH | 0.0 | 0.0 | 3.313033 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021350 | RBH | 0.000000 | 0.0 | 0.883515 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021230 | RBH | 0.0 | 0.0 | 2.816663 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021420 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0021280 | RBH | 0.575361 | 0.0 | 5.098577 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0398800 | RBH | 1.316741 | 1.5577695 | 7.6211515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021170 | RBH | 0.079978 | 0.134864 | 0.900712 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0419100 | RBH | 3.376945 | 1.6612435 | 4.1244615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0014740 | RBH | 0.165395 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020790 | RBH | 0.101900 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021460 | RBH | 0.0 | 0.252233 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020830 | RBH | 0.132361 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020990 | RBH | 0.0 | 0.0 | 0.115366 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021150 | RBH | 0.0 | 2.205946 | 2.558830 |
