Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0017970 | OGI:08066320 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:23631686-23633384 | ||||||||
| Gene Symbol | CYP76M1, CYP76M1 | ||||||||||
| DNA seq | ggactactatccgtgaacaagaaatggatgtcaaccagctctggttactgtgggcaacactcgccgtgtcactgctctactacatcagcaaccggagacgccgcgtgggcggccggcgacgatgtccacctggtcccatgccgctcccgctcgtcggcaacctgctcaacctgcgcggccacctcccacccgcgctcgcgaggctagcgcgcacgtacggccccgtgatgatgctaaagatgggcctcaccaccaccgtcgtcatctcctccggcgacgcggcgagggaggccttcacgaagcacgaccggcacctcgccgcgcgcaccgtcctggacgtcactcgttctctcgacttcgccgaccggtccatgatatggctgccgagctccgataccgtctggaagacgctccgcggcgtcacggcggcgagcatcttctcgccgcgtggcctcgccgccctgcgcggcgtccgcgagagcaaggtgcgggacctggtgggctacttccgtgggcgcgccggggaggtcgtggacgtccgccacgccgtgtacggctgcatgctcagcctcgtgtcgagcgcgttcttctccgtcgacgtggtcgacctgagcgccgagtccgagaacgagttccggcagagcatgacgttcctcatggaggtggtgtcgaagacgaacgtctccgatttcttccctttcctccggccgctcgacttgcagggatggcgtcgcttgaccgaaaggtatctgggcagagtcacctgcttcttggatgacgtgatcgaccgccgtttcgccgccgacgcctcggcaaacaggcacggcgacttcttggactccctcctcgacctcgtgtccaccggcaagatcgtccgcgaaaacgtgacaaccattttgctcgacgtgttcatagccgggagcgacacgatcacggccacggtggagtgggcgatggccgagctgctccgcaacccaagcgaaatggccaaggtgcgcgccgagatggacggcgctctcggcggcaagaaaaccgtcgacgagcccgacatcgcgaggctgccgtacctccaggcggtcgtgaaagaggcgatgcggctgcacccggcagcgccgctgctgttgccccaccgggcggtggaggacggcgtggaggtcggcggctactgcgtgccgaagggctcgatggtgatcttcaacgtgtgggcgataatgcgcgacccggcggcgtgggagaggccggaggagttcatgccggagcggttcatccgccggggagatgatgacgaggtggatttctgggggaagacgttcgagttcatcccgttcgggtccggccggagggtgtgcgccggcctgccgatggcggaacgtgtcgtgccgttcatgctggcgtcgctgctgcgcgcgttcgagtggcgactccccgacggcgtgtcggccgaggagttggacatgcgccacaggtttaccattgccaacttccgtgccatccctctcaaggccgtgcccgttgtggtcagctagttgctctctttcactgcatcaatggtgaattgtggcgcgtacgtctctccatttggcccacatatgtcaagttggatattataattgaagctagtggtgtaagttgttcaatttaacattatcgtaatgataaagattttaatgataaataattatctaaatctatacatatt
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| CDS seq | atggatgtcaaccagctctggttactgtgggcaacactcgccgtgtcactgctctactacatcagcaaccggagacgccgcgtgggcggccggcgacgatgtccacctggtcccatgccgctcccgctcgtcggcaacctgctcaacctgcgcggccacctcccacccgcgctcgcgaggctagcgcgcacgtacggccccgtgatgatgctaaagatgggcctcaccaccaccgtcgtcatctcctccggcgacgcggcgagggaggccttcacgaagcacgaccggcacctcgccgcgcgcaccgtcctggacgtcactcgttctctcgacttcgccgaccggtccatgatatggctgccgagctccgataccgtctggaagacgctccgcggcgtcacggcggcgagcatcttctcgccgcgtggcctcgccgccctgcgcggcgtccgcgagagcaaggtgcgggacctggtgggctacttccgtgggcgcgccggggaggtcgtggacgtccgccacgccgtgtacggctgcatgctcagcctcgtgtcgagcgcgttcttctccgtcgacgtggtcgacctgagcgccgagtccgagaacgagttccggcagagcatgacgttcctcatggaggtggtgtcgaagacgaacgtctccgatttcttccctttcctccggccgctcgacttgcagggatggcgtcgcttgaccgaaaggtatctgggcagagtcacctgcttcttggatgacgtgatcgaccgccgtttcgccgccgacgcctcggcaaacaggcacggcgacttcttggactccctcctcgacctcgtgtccaccggcaagatcgtccgcgaaaacgtgacaaccattttgctcgacgtgttcatagccgggagcgacacgatcacggccacggtggagtgggcgatggccgagctgctccgcaacccaagcgaaatggccaaggtgcgcgccgagatggacggcgctctcggcggcaagaaaaccgtcgacgagcccgacatcgcgaggctgccgtacctccaggcggtcgtgaaagaggcgatgcggctgcacccggcagcgccgctgctgttgccccaccgggcggtggaggacggcgtggaggtcggcggctactgcgtgccgaagggctcgatggtgatcttcaacgtgtgggcgataatgcgcgacccggcggcgtgggagaggccggaggagttcatgccggagcggttcatccgccggggagatgatgacgaggtggatttctgggggaagacgttcgagttcatcccgttcgggtccggccggagggtgtgcgccggcctgccgatggcggaacgtgtcgtgccgttcatgctggcgtcgctgctgcgcgcgttcgagtggcgactccccgacggcgtgtcggccgaggagttggacatgcgccacaggtttaccattgccaacttccgtgccatccctctcaaggccgtgcccgttgtggtcagctag
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| Protein seq | MDVNQLWLLWATLAVSLLYYISNRRRRVGGRRRCPPGPMPLPLVGNLLNLRGHLPPALARLARTYGPVMMLKMGLTTTVVISSGDAAREAFTKHDRHLAARTVLDVTRSLDFADRSMIWLPSSDTVWKTLRGVTAASIFSPRGLAALRGVRESKVRDLVGYFRGRAGEVVDVRHAVYGCMLSLVSSAFFSVDVVDLSAESENEFRQSMTFLMEVVSKTNVSDFFPFLRPLDLQGWRRLTERYLGRVTCFLDDVIDRRFAADASANRHGDFLDSLLDLVSTGKIVRENVTTILLDVFIAGSDTITATVEWAMAELLRNPSEMAKVRAEMDGALGGKKTVDEPDIARLPYLQAVVKEAMRLHPAAPLLLPHRAVEDGVEVGGYCVPKGSMVIFNVWAIMRDPAAWERPEEFMPERFIRRGDDDEVDFWGKTFEFIPFGSGRRVCAGLPMAERVVPFMLASLLRAFEWRLPDGVSAEELDMRHRFTIANFRAIPLKAVPVVVS |
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| Function | Cytochrome P450 76M5 [UniProtKB/Swiss-Prot:Q6YTF5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0017970 | OsLima_08g0017970.01 | Chr08 | 23631686 | 23633384 | + | NAM | ||
| CDS seq | atggatgtcaaccagctctggttactgtgggcaacactcgccgtgtcactgctctactacatcagcaaccggagacgccgcgtgggcggccggcgacgatgtccacctggtcccatgccgctcccgctcgtcggcaacctgctcaacctgcgcggccacctcccacccgcgctcgcgaggctagcgcgcacgtacggccccgtgatgatgctaaagatgggcctcaccaccaccgtcgtcatctcctccggcgacgcggcgagggaggccttcacgaagcacgaccggcacctcgccgcgcgcaccgtcctggacgtcactcgttctctcgacttcgccgaccggtccatgatatggctgccgagctccgataccgtctggaagacgctccgcggcgtcacggcggcgagcatcttctcgccgcgtggcctcgccgccctgcgcggcgtccgcgagagcaaggtgcgggacctggtgggctacttccgtgggcgcgccggggaggtcgtggacgtccgccacgccgtgtacggctgcatgctcagcctcgtgtcgagcgcgttcttctccgtcgacgtggtcgacctgagcgccgagtccgagaacgagttccggcagagcatgacgttcctcatggaggtggtgtcgaagacgaacgtctccgatttcttccctttcctccggccgctcgacttgcagggatggcgtcgcttgaccgaaaggtatctgggcagagtcacctgcttcttggatgacgtgatcgaccgccgtttcgccgccgacgcctcggcaaacaggcacggcgacttcttggactccctcctcgacctcgtgtccaccggcaagatcgtccgcgaaaacgtgacaaccattttgctcgacgtgttcatagccgggagcgacacgatcacggccacggtggagtgggcgatggccgagctgctccgcaacccaagcgaaatggccaaggtgcgcgccgagatggacggcgctctcggcggcaagaaaaccgtcgacgagcccgacatcgcgaggctgccgtacctccaggcggtcgtgaaagaggcgatgcggctgcacccggcagcgccgctgctgttgccccaccgggcggtggaggacggcgtggaggtcggcggctactgcgtgccgaagggctcgatggtgatcttcaacgtgtgggcgataatgcgcgacccggcggcgtgggagaggccggaggagttcatgccggagcggttcatccgccggggagatgatgacgaggtggatttctgggggaagacgttcgagttcatcccgttcgggtccggccggagggtgtgcgccggcctgccgatggcggaacgtgtcgtgccgttcatgctggcgtcgctgctgcgcgcgttcgagtggcgactccccgacggcgtgtcggccgaggagttggacatgcgccacaggtttaccattgccaacttccgtgccatccctctcaaggccgtgcccgttgtggtcagctag
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| Protein seq | MDVNQLWLLWATLAVSLLYYISNRRRRVGGRRRCPPGPMPLPLVGNLLNLRGHLPPALARLARTYGPVMMLKMGLTTTVVISSGDAAREAFTKHDRHLAARTVLDVTRSLDFADRSMIWLPSSDTVWKTLRGVTAASIFSPRGLAALRGVRESKVRDLVGYFRGRAGEVVDVRHAVYGCMLSLVSSAFFSVDVVDLSAESENEFRQSMTFLMEVVSKTNVSDFFPFLRPLDLQGWRRLTERYLGRVTCFLDDVIDRRFAADASANRHGDFLDSLLDLVSTGKIVRENVTTILLDVFIAGSDTITATVEWAMAELLRNPSEMAKVRAEMDGALGGKKTVDEPDIARLPYLQAVVKEAMRLHPAAPLLLPHRAVEDGVEVGGYCVPKGSMVIFNVWAIMRDPAAWERPEEFMPERFIRRGDDDEVDFWGKTFEFIPFGSGRRVCAGLPMAERVVPFMLASLLRAFEWRLPDGVSAEELDMRHRFTIANFRAIPLKAVPVVVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.618711 | 0.143036 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0465700 | RBH | 2.850025 | 2.351447 | 0.705339 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g36310 | RBH | 1.907048 | 1.576636 | 0.179657 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0465700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018870 | RBH | 0.481328 | 3.089031 | 0.373284 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018750 | RBH | 1.338238 | 1.265928 | 1.686928 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0018670 | RBH | 1.360871 | 0.0 | 1.169096 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0018870 | RBH | 0.293468 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0018720 | RBH | 7.273605 | 1.993225 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0364200 | RBH | 1.855906 | 7.712963 | 0.9924275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0018640 | RBH | 0.342094 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0382600 | RBH | 1.8049475 | 3.2578815 | 0.5905725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0012250 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0018240 | RBH | 1.207598 | 5.309384 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0018080 | RBH | 4.159925 | 7.441654 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0018920 | RBH | 0.108109 | 0.0 | 0.135020 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0018290 | RBH | 0.208720 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G018470 | RBH | 0.368814 | 0.0 | 0.208855 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0018580 | RBH | 0.280051 | 2.329433 | 0.462530 |
