Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0017580 | OGI:08065370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:23189232-23192394 | ||||||||
| Gene Symbol | RLCK255, OsRLCK255, PTK13, OsPTK13 | ||||||||||
| DNA seq | gtccaaagcaaggcacacctttttattcctttttattaccatgccagtaagaccaaacaaggttttcaaggcaaaatagcaggcaaccattggccaattctatcttcgctcttgattaaccacgatgaaaaatccacaatcaggattctcatcacattattggcacattacggccaataacagaacactatcaataaaatgaataaatcccacacaaaaaaccaatgtggtgttgtgtgtcctgtatcacaacacctctaagatctagcttagttatgtacagatccttttgtttcccctaattaatattactcctatatcttcccctcttaggtctgaccatgaaattctaggcacccctctccttgagatagctcggtgtccttctgtgccgcctgagcgaggtggtgtacgatccgatggagccgtcgcgttgcagcacgatgtcagcatggattgcagagtttgggttcttctgccggtatcgatcatggtgactctggtgcttctcttccactgtcgcctcgatcctcatgtcaaccttgttctcaccatctacttgcttggttttggtcacatcgtccttcttgttatcttccacaacgacggtgaacacaaatgtaccaatttggaggtagtcattcatgtccaatatgggctctagggccttgaccacctccctcatgctgggcctggactttggtgatgggctcaagcacttgtaggctaccaaagcagcctcttgggcccctttgtaggagtattggccctccatggctgggtccatgacgacccggtgcaactggtcgggcttcttgaggtactttcttgtccaatccaccaggctttgctccctatggcgacgagagcggtccaccgagtgccgacccgataatagctccagtagtaccacaccaaaactatacacatcgctcttgtcggtcaggtgccctgtcatgatgtactcgggcgccgcatacccgtttgtccccatgacacgcgtcgtgacatgggtcgcgtcgccctgcggcccatccttggcaagcccaaagtcggaaagcttggtgttgaagtcctgaaatcaaatgaatcagagatcgggttaggcagggatcacagttgacaattacaatgacatgcaggagacagacgacaatgtttctgtcagtatcatgctagtaatcacgccagtcggccagtgccattaactggcataatgattctgtacggatatgatgctagggatggatttttattaggtgctgtgtagccatctattcctagagaagacagcatgagctgggatctctgaaccctgaaggttgggccatccaagaaccttccaagttgcaatcatgtctaacgaacccacacacccagccaacgattttggaacgtgtggcacgcagactttgacagtcaaatctagacttgataacttgacaagtggtatcccatcaaaattttcagaaataagaagcgaaaaatggtctgaaagttaggtggtgtttacatccagggacttaactttagtttctgtctttagacactaatttagagtattaaatatagactacttacaaaactaattacataaataaaagctaattcacgagacaaattttttaagcctaattaatctataattagagaatgtttactgtagcatcacataggctaatcatggattaattaggctcattagattcgtctcgcaaattagtccaagattatggataggttttattaatagtctacgtttaatatttataattaattttcaaacatccgatgtgatagggacttaaaagttttagtcccatctgtggccttagtaaaatttttcacggcagtttgaattttcgctctcaggacatggtagttttttttttctttaacgactgaaatttctactgcactcgagtgaaatgactgcgaaaagtacacagtggaatcaagaacgggatggtgctcaccgagtcgaggaggatgttggatgccttgaagtcacggtagatgaccggcgtgtcggcgtcgtggaggaaggcgagccccttcgccgcgccgacggcggtctgcatcctcctcatccatggcatggcgccatcgagacctgcacggacaggaggacggttcagcgtcagctaaagtcttccccggaattttttcagagctgaaacttcagcgatggcgtaagcgcgctctaagcgcaaatgatcggttaaccactcgtgtataaacaccagtaatctcccggattctattgacgattgcgacgggggtaaaaaaaaaaaaagaagaaaagattcaacagttggtaattattctcgtgtgcttacttttgaagagatgcttctccaagctcccgttgctcatgtactcgtacaccagcatccggtgttcgtcctcgtagcagtagccgatcagcttgacgagattcttgtgcctcaactgaccaaggaagaacacctcagcctgcaagaaagaaaggttcgttgattaattagcacggtgagctaaagctcgagctagcccaacaatggcggaaggaacgcgtgaggtggagagtgacgtaccagccactccctgtggccctgcgtgccgcagtcgaggtcgaggtacttgacggcgacggcctgcgcggcgaggccggggcggaggccgtcgtcggcgcggcccttgtacacggggccgaacccgccggagccgaggtagttggcgcgggagaagccgccggtgacggccctcatctcggcgtaggtgaaggcgtacaggttcgagcccgacagcgtcagcgacaggtcctccggcgtgagggtccccgtcgagctcaggctcgacagcgacaccctcgacgccgacgacgccgacgacgacgacgacagcagccgctggtggtgaccaccccctctgaccctcctcctctccggcggcacgtcgtcctcaacgccggccaccccgccgccgccgacgcagcagagcatcgacttccacgacgtccgcaactcagccatcgaatcgatcaaatccaagatgaacaagaagccaagaaaaaccaatcgcccacgaacacgaagcagcagagagccagagaccgaaatgcagagacggagacagcgagtaccagagcttgtaaagaagaagaagaagagaggacagagtt
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| CDS seq | atggctgagttgcggacgtcgtggaagtcgatgctctgctgcgtcggcggcggcggggtggccggcgttgaggacgacgtgccgccggagaggaggagggtcagagggggtggtcaccaccagcggctgctgtcgtcgtcgtcgtcggcgtcgtcggcgtcgagggtgtcgctgtcgagcctgagctcgacggggaccctcacgccggaggacctgtcgctgacgctgtcgggctcgaacctgtacgccttcacctacgccgagatgagggccgtcaccggcggcttctcccgcgccaactacctcggctccggcgggttcggccccgtgtacaagggccgcgccgacgacggcctccgccccggcctcgccgcgcaggccgtcgccgtcaagtacctcgacctcgactgcggcacgcagggccacagggagtggctggctgaggtgttcttccttggtcagttgaggcacaagaatctcgtcaagctgatcggctactgctacgaggacgaacaccggatgctggtgtacgagtacatgagcaacgggagcttggagaagcatctcttcaaaagtctcgatggcgccatgccatggatgaggaggatgcagaccgccgtcggcgcggcgaaggggctcgccttcctccacgacgccgacacgccggtcatctaccgtgacttcaaggcatccaacatcctcctcgactcggacttcaacaccaagctttccgactttgggcttgccaaggatgggccgcagggcgacgcgacccatgtcacgacgcgtgtcatggggacaaacgggtatgcggcgcccgagtacatcatgacagggcacctgaccgacaagagcgatgtgtatagttttggtgtggtactactggagctattatcgggtcggcactcggtggaccgctctcgtcgccatagggagcaaagcctggtggattggacaagaaagtacctcaagaagcccgaccagttgcaccgggtcgtcatggacccagccatggagggccaatactcctacaaaggggcccaagaggctgctttggtagcctacaagtgcttgagcccatcaccaaagtccaggcccagcatgagggaggtggtcaaggccctagagcccatattggacatgaatgactacctccaaattggtacatttgtgttcaccgtcgttgtggaagataacaagaaggacgatgtgaccaaaaccaagcaagtagatggtgagaacaaggttgacatgaggatcgaggcgacagtggaagagaagcaccagagtcaccatgatcgataccggcagaagaacccaaactctgcaatccatgctgacatcgtgctgcaacgcgacggctccatcggatcgtacaccacctcgctcaggcggcacagaaggacaccgagctatctcaaggagaggggtgcctag
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| Protein seq | MAELRTSWKSMLCCVGGGGVAGVEDDVPPERRRVRGGGHHQRLLSSSSSASSASRVSLSSLSSTGTLTPEDLSLTLSGSNLYAFTYAEMRAVTGGFSRANYLGSGGFGPVYKGRADDGLRPGLAAQAVAVKYLDLDCGTQGHREWLAEVFFLGQLRHKNLVKLIGYCYEDEHRMLVYEYMSNGSLEKHLFKSLDGAMPWMRRMQTAVGAAKGLAFLHDADTPVIYRDFKASNILLDSDFNTKLSDFGLAKDGPQGDATHVTTRVMGTNGYAAPEYIMTGHLTDKSDVYSFGVVLLELLSGRHSVDRSRRHREQSLVDWTRKYLKKPDQLHRVVMDPAMEGQYSYKGAQEAALVAYKCLSPSPKSRPSMREVVKALEPILDMNDYLQIGTFVFTVVVEDNKKDDVTKTKQVDGENKVDMRIEATVEEKHQSHHDRYRQKNPNSAIHADIVLQRDGSIGSYTTSLRRHRRTPSYLKERGA |
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| Function | Serine/threonine-protein kinase RIPK [UniProtKB/Swiss-Prot:Q9ZUF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0017580 | OsLima_08g0017580.01 | Chr08 | 23189232 | 23192394 | - | NAM | ||
| CDS seq | atggctgagttgcggacgtcgtggaagtcgatgctctgctgcgtcggcggcggcggggtggccggcgttgaggacgacgtgccgccggagaggaggagggtcagagggggtggtcaccaccagcggctgctgtcgtcgtcgtcgtcggcgtcgtcggcgtcgagggtgtcgctgtcgagcctgagctcgacggggaccctcacgccggaggacctgtcgctgacgctgtcgggctcgaacctgtacgccttcacctacgccgagatgagggccgtcaccggcggcttctcccgcgccaactacctcggctccggcgggttcggccccgtgtacaagggccgcgccgacgacggcctccgccccggcctcgccgcgcaggccgtcgccgtcaagtacctcgacctcgactgcggcacgcagggccacagggagtggctggctgaggtgttcttccttggtcagttgaggcacaagaatctcgtcaagctgatcggctactgctacgaggacgaacaccggatgctggtgtacgagtacatgagcaacgggagcttggagaagcatctcttcaaaagtctcgatggcgccatgccatggatgaggaggatgcagaccgccgtcggcgcggcgaaggggctcgccttcctccacgacgccgacacgccggtcatctaccgtgacttcaaggcatccaacatcctcctcgactcggacttcaacaccaagctttccgactttgggcttgccaaggatgggccgcagggcgacgcgacccatgtcacgacgcgtgtcatggggacaaacgggtatgcggcgcccgagtacatcatgacagggcacctgaccgacaagagcgatgtgtatagttttggtgtggtactactggagctattatcgggtcggcactcggtggaccgctctcgtcgccatagggagcaaagcctggtggattggacaagaaagtacctcaagaagcccgaccagttgcaccgggtcgtcatggacccagccatggagggccaatactcctacaaaggggcccaagaggctgctttggtagcctacaagtgcttgagcccatcaccaaagtccaggcccagcatgagggaggtggtcaaggccctagagcccatattggacatgaatgactacctccaaattggtacatttgtgttcaccgtcgttgtggaagataacaagaaggacgatgtgaccaaaaccaagcaagtagatggtgagaacaaggttgacatgaggatcgaggcgacagtggaagagaagcaccagagtcaccatgatcgataccggcagaagaacccaaactctgcaatccatgctgacatcgtgctgcaacgcgacggctccatcggatcgtacaccacctcgctcaggcggcacagaaggacaccgagctatctcaaggagaggggtgcctag
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| Protein seq | MAELRTSWKSMLCCVGGGGVAGVEDDVPPERRRVRGGGHHQRLLSSSSSASSASRVSLSSLSSTGTLTPEDLSLTLSGSNLYAFTYAEMRAVTGGFSRANYLGSGGFGPVYKGRADDGLRPGLAAQAVAVKYLDLDCGTQGHREWLAEVFFLGQLRHKNLVKLIGYCYEDEHRMLVYEYMSNGSLEKHLFKSLDGAMPWMRRMQTAVGAAKGLAFLHDADTPVIYRDFKASNILLDSDFNTKLSDFGLAKDGPQGDATHVTTRVMGTNGYAAPEYIMTGHLTDKSDVYSFGVVLLELLSGRHSVDRSRRHREQSLVDWTRKYLKKPDQLHRVVMDPAMEGQYSYKGAQEAALVAYKCLSPSPKSRPSMREVVKALEPILDMNDYLQIGTFVFTVVVEDNKKDDVTKTKQVDGENKVDMRIEATVEEKHQSHHDRYRQKNPNSAIHADIVLQRDGSIGSYTTSLRRHRRTPSYLKERGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.115194 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0457400 | RBH | 0.264798 | 0.135778 | 0.646128 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g35600 | RBH | 0.170649 | 0.087027 | 0.158504 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0457400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018410 | RBH | 0.0 | 3.843357 | 0.327755 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018300 | RBH | 0.0 | 1.943337 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0018230 | RBH | 0.0 | 2.880442 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0018500 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0018320 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0359000 | RBH | 0.2255755 | 6.856798 | 0.899564 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0018260 | RBH | 0.0 | 0.245659 | 0.063692 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0375600 | RBH | 0.6010515 | 8.050483 | 0.036759 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011920 | RBH | 0.0 | 0.358753 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017850 | RBH | 0.0 | 6.167489 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0017710 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0018500 | RBH | 0.0 | 0.203675 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017900 | RBH | 0.0 | 2.470405 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G018090 | RBH | 0.0 | 0.0 | 0.183381 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0018170 | RBH | 0.0 | 5.100535 | 0.291471 |
