Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0017530 | OGI:08065250 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:23148370-23149932 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcataaggagtagagatgaacgggaagcctaggctcgacgaccacctggagcgggtacttgcgcgtggtcgacagcccaaacacctcgtccatgctcagctcctcctccttcatcccctccggcaacctccacgcgaacccgtgcagcaggttggccaagctcagctgcatcaccttgagcccgaggttgtagccggggcacatgcgccgcccggacccgaacggcagcagctcgaagtcctgccccttcacgtcgatcctgctcccgatgaacctctccggcataaactcctccgccgcgtcccacagctccgggtcccggccgatggtccacacgttgatgagcacgcgcgcgcccttggggatgtcgtagcccgcgacggcggcgtcgtcgcgggcgacgcgcgggatgaggagcggcacgatggggtgcatccgcatggtctctttcatgatggcgtcgaggtaggggaggttcgggatgtccttctccgtgacccagcggccgcggccgacgacgcggtcgagctcgtcggtggccgtggcgaagatggcggggtttttgaagagctccgagagcgcccactccacagtcaccgacgagctctccgtgcccccggcgatgaggtcctgcgtgaacgccttgacgccgacgcggccgagcttgatctcgagggaggggtcgtcggcgaggtccatgagcacgtccaccatgtccctcgccacgaacgcctcgccctcgcgccgccgccgctcgctgtgctcgtcgaggacgtgctccatgaacgcgtcgaacatcttgcccaccttcttcatccgccgcacgtacccctgcaggtccatccagtccacccacgggatccagtcgccgacgttgagcacgccgttgagcaggaggagctcgtccagcatccacttgaactccgacagcgtcgacacgggcccctccgccgcgtccgcgccctcgccgaagaaccgcttcccgagcaccatccgcgtgatcacgttcatgctcagcgtggacaggtgatccctgttgaggtacacggcgccgctgcgtcccgacgacgccgcggcgaagaggccgcgcaccagcgcgcgcacctcgtcggcgcggatgtgctcgaacgacgcgacgcggcgggcgctgaacagctcggtgacgcagatccgccgcgcctggcgccagtacgcgccgtacggcgaccacgtgatgtcggcgtagccgtaggtggtgtgcttcccggacgccgtcctggggcggtcgatgaacaccgcgtcgtgggtcttgaggacgagcctggccatggcgaccgacgagccgacgacgacggggaaggagccgaagcggaggagcatgagctcgccgtacttcctggagagctcatggatggagcggtgcggcagcgcgccgatgaggttgaagttgccgatgacgggccacggcgtcggacccggcggcaggttgtagccacggcggctgcccttgcgtttgatcagcccgagtagcaggaaggcggcgagcgccatggatagcaaggtggccaatgctgatggctccat
More
|
||||||||||
| CDS seq | atggagccatcagcattggccaccttgctatccatggcgctcgccgccttcctgctactcgggctgatcaaacgcaagggcagccgccgtggctacaacctgccgccgggtccgacgccgtggcccgtcatcggcaacttcaacctcatcggcgcgctgccgcaccgctccatccatgagctctccaggaagtacggcgagctcatgctcctccgcttcggctccttccccgtcgtcgtcggctcgtcggtcgccatggccaggctcgtcctcaagacccacgacgcggtgttcatcgaccgccccaggacggcgtccgggaagcacaccacctacggctacgccgacatcacgtggtcgccgtacggcgcgtactggcgccaggcgcggcggatctgcgtcaccgagctgttcagcgcccgccgcgtcgcgtcgttcgagcacatccgcgccgacgaggtgcgcgcgctggtgcgcggcctcttcgccgcggcgtcgtcgggacgcagcggcgccgtgtacctcaacagggatcacctgtccacgctgagcatgaacgtgatcacgcggatggtgctcgggaagcggttcttcggcgagggcgcggacgcggcggaggggcccgtgtcgacgctgtcggagttcaagtggatgctggacgagctcctcctgctcaacggcgtgctcaacgtcggcgactggatcccgtgggtggactggatggacctgcaggggtacgtgcggcggatgaagaaggtgggcaagatgttcgacgcgttcatggagcacgtcctcgacgagcacagcgagcggcggcggcgcgagggcgaggcgttcgtggcgagggacatggtggacgtgctcatggacctcgccgacgacccctccctcgagatcaagctcggccgcgtcggcgtcaaggcgttcacgcaggacctcatcgccgggggcacggagagctcgtcggtgactgtggagtgggcgctctcggagctcttcaaaaaccccgccatcttcgccacggccaccgacgagctcgaccgcgtcgtcggccgcggccgctgggtcacggagaaggacatcccgaacctcccctacctcgacgccatcatgaaagagaccatgcggatgcaccccatcgtgccgctcctcatcccgcgcgtcgcccgcgacgacgccgccgtcgcgggctacgacatccccaagggcgcgcgcgtgctcatcaacgtgtggaccatcggccgggacccggagctgtgggacgcggcggaggagtttatgccggagaggttcatcgggagcaggatcgacgtgaaggggcaggacttcgagctgctgccgttcgggtccgggcggcgcatgtgccccggctacaacctcgggctcaaggtgatgcagctgagcttggccaacctgctgcacgggttcgcgtggaggttgccggaggggatgaaggaggaggagctgagcatggacgaggtgtttgggctgtcgaccacgcgcaagtacccgctccaggtggtcgtcgagcctaggcttcccgttcatctctactccttatga
More
|
||||||||||
| Protein seq | MEPSALATLLSMALAAFLLLGLIKRKGSRRGYNLPPGPTPWPVIGNFNLIGALPHRSIHELSRKYGELMLLRFGSFPVVVGSSVAMARLVLKTHDAVFIDRPRTASGKHTTYGYADITWSPYGAYWRQARRICVTELFSARRVASFEHIRADEVRALVRGLFAAASSGRSGAVYLNRDHLSTLSMNVITRMVLGKRFFGEGADAAEGPVSTLSEFKWMLDELLLLNGVLNVGDWIPWVDWMDLQGYVRRMKKVGKMFDAFMEHVLDEHSERRRREGEAFVARDMVDVLMDLADDPSLEIKLGRVGVKAFTQDLIAGGTESSSVTVEWALSELFKNPAIFATATDELDRVVGRGRWVTEKDIPNLPYLDAIMKETMRMHPIVPLLIPRVARDDAAVAGYDIPKGARVLINVWTIGRDPELWDAAEEFMPERFIGSRIDVKGQDFELLPFGSGRRMCPGYNLGLKVMQLSLANLLHGFAWRLPEGMKEEELSMDEVFGLSTTRKYPLQVVVEPRLPVHLYSL |
||||||||||
| Function | Dimethylnonatriene synthase [UniProtKB/Swiss-Prot:A0A1D6HSP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0017530 | OsLima_08g0017530.01 | Chr08 | 23148370 | 23149932 | - | NAM | ||
| CDS seq | atggagccatcagcattggccaccttgctatccatggcgctcgccgccttcctgctactcgggctgatcaaacgcaagggcagccgccgtggctacaacctgccgccgggtccgacgccgtggcccgtcatcggcaacttcaacctcatcggcgcgctgccgcaccgctccatccatgagctctccaggaagtacggcgagctcatgctcctccgcttcggctccttccccgtcgtcgtcggctcgtcggtcgccatggccaggctcgtcctcaagacccacgacgcggtgttcatcgaccgccccaggacggcgtccgggaagcacaccacctacggctacgccgacatcacgtggtcgccgtacggcgcgtactggcgccaggcgcggcggatctgcgtcaccgagctgttcagcgcccgccgcgtcgcgtcgttcgagcacatccgcgccgacgaggtgcgcgcgctggtgcgcggcctcttcgccgcggcgtcgtcgggacgcagcggcgccgtgtacctcaacagggatcacctgtccacgctgagcatgaacgtgatcacgcggatggtgctcgggaagcggttcttcggcgagggcgcggacgcggcggaggggcccgtgtcgacgctgtcggagttcaagtggatgctggacgagctcctcctgctcaacggcgtgctcaacgtcggcgactggatcccgtgggtggactggatggacctgcaggggtacgtgcggcggatgaagaaggtgggcaagatgttcgacgcgttcatggagcacgtcctcgacgagcacagcgagcggcggcggcgcgagggcgaggcgttcgtggcgagggacatggtggacgtgctcatggacctcgccgacgacccctccctcgagatcaagctcggccgcgtcggcgtcaaggcgttcacgcaggacctcatcgccgggggcacggagagctcgtcggtgactgtggagtgggcgctctcggagctcttcaaaaaccccgccatcttcgccacggccaccgacgagctcgaccgcgtcgtcggccgcggccgctgggtcacggagaaggacatcccgaacctcccctacctcgacgccatcatgaaagagaccatgcggatgcaccccatcgtgccgctcctcatcccgcgcgtcgcccgcgacgacgccgccgtcgcgggctacgacatccccaagggcgcgcgcgtgctcatcaacgtgtggaccatcggccgggacccggagctgtgggacgcggcggaggagtttatgccggagaggttcatcgggagcaggatcgacgtgaaggggcaggacttcgagctgctgccgttcgggtccgggcggcgcatgtgccccggctacaacctcgggctcaaggtgatgcagctgagcttggccaacctgctgcacgggttcgcgtggaggttgccggaggggatgaaggaggaggagctgagcatggacgaggtgtttgggctgtcgaccacgcgcaagtacccgctccaggtggtcgtcgagcctaggcttcccgttcatctctactccttatga
More
|
|||||||
| Protein seq | MEPSALATLLSMALAAFLLLGLIKRKGSRRGYNLPPGPTPWPVIGNFNLIGALPHRSIHELSRKYGELMLLRFGSFPVVVGSSVAMARLVLKTHDAVFIDRPRTASGKHTTYGYADITWSPYGAYWRQARRICVTELFSARRVASFEHIRADEVRALVRGLFAAASSGRSGAVYLNRDHLSTLSMNVITRMVLGKRFFGEGADAAEGPVSTLSEFKWMLDELLLLNGVLNVGDWIPWVDWMDLQGYVRRMKKVGKMFDAFMEHVLDEHSERRRREGEAFVARDMVDVLMDLADDPSLEIKLGRVGVKAFTQDLIAGGTESSSVTVEWALSELFKNPAIFATATDELDRVVGRGRWVTEKDIPNLPYLDAIMKETMRMHPIVPLLIPRVARDDAAVAGYDIPKGARVLINVWTIGRDPELWDAAEEFMPERFIGSRIDVKGQDFELLPFGSGRRMCPGYNLGLKVMQLSLANLLHGFAWRLPEGMKEEELSMDEVFGLSTTRKYPLQVVVEPRLPVHLYSL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0456200 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g35510 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0456200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018360 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018250 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0018180 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0018450 | RBH | 0.0 | 0.037739 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0018270 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0358100 | RBH | 0 | 0.346703 | 0.007273 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0018210 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0374700 | RBH | 0 | 0.2071545 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011880 | RBH | 1.055744 | 0.333267 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0017660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0018450 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017850 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G018040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0018120 | RBH | 0.000000 | 0.0 | 0.0 |
