Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0016440 | OGI:08061950 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:21797646-21799805 | ||||||||
| Gene Symbol | DLN210, OsDLN210 | ||||||||||
| DNA seq | cactgcaaactgatttatgtactgctcttgttactaacatattaacttccaatcactgtaactaaactttgatccacactgagctcagctgtgaaaaatcaaccttgctctttaaattacactgcaaaccaattccatctttcatggaaatcccattggtccctaaagcatcattcactagctgcataatccacactactacagttctatatattcttgcacctcaagcatgccacatgcatctgcagctgggccagccaccaattcgaattccatttttttttacaggtacgtgaaacacaagaaccagatgcttgcatagctatatatatatatatataagttaaagtaaaatatatatcatcatagaatgaggagtagcagcagcagtagctgttgcagtagcaggcagacattgctcaaaagcctggttgcttggccccagccttgaaggccaccccaccaatcatccactgcagcaatgcacagcagcacatcatcacagatgcttctgctgcttctcttcctcctctgcctctacctgttcagatcaatctctgatgagcttccatcctctgctcctgcatattcttcttcttgttcttcttcttgatctgcctgggtgtgcctttgcaggaagttgaaggtcctcttgccctgcaccggctgctcgacggtgcaatcgctggtgtggagccgcttggacccggcggccttgctctcggcctccgacgacgacgtcgtagtcacgcagctgtcggttgcggcggattggcggtggtgccgtggcggggaggaggaggacatgcactcgatgtccacggcggaggcgagctccgagagctccgtcgtggcggcctccggcgagcttgccaggctatggtcggccaggacttgctgcgccctgcgtagcactgactgcaggtacctcccctgtgcctccatcctcagttgcagatgcctcttgacctgccatggataatggattaatcaaaacttgcttgatcactgatcagctagacgacgacgagatgacaattgacaaatgacaacaatctcgacgaactctgaactttttttttttacctcaatctgctcctggagcttcctctggacttccctctgcatctgcaccatgctcctggatgaatcacggagagcttctttagcatcgccatcgctgtcgccgtcgtaagcaatggtgcgcggctcatcggcggcgctatcgccgtcgtggtcggctggttggcgctccgacgaggatgaccggtcgttcaggctgccgctgcctccgccgcctccattgccgccgcggctcaccgcctgccggtacttctgcagcagcggcagagagcttaacactgtcagaaaccaagaaccgatgcagacagagtttgcgagaagctgatcggctgccggagagagctcgccggcggcgtgacgcacgcacgcacgcacctggaggtggctcttgaggtggtacaaggtgagccccggcacggccatggccctcagcacggacttgggcgtcgcccctgcaatggcgccaagaaacaaagccgatcgatcagccatgcccatgatcaatgatgtcagaggaggaagaagaagcaagaaggcgcgggggtggggcttactgtccgcgccgccgagctccgccacggcgaggacgaaccgctcgtgcagctgcccggtccacctgagccgcgcccgggcagcggcggcggcggaggcgggggcctcaccggcgtgctgctgctgctgctgcgacgacatttccagcgagccaccactgcccaccccggtgcgcggtatctcttcaggatcggcggcctctccagcatcagaagcctctgccggcgaccgatcaccctcaccggagccgatcgacgacgacgaagacgagcgagcgatgctgtttactgctgctgctgctgcttcgtcgtccaagtagccgtgtggctgggtgagttcttatagtggaagcttcaagcttggggttgagctaaggtaagctaagctaaggtcagttggttcctttccttggactccactactcagatatattcctcttcgtcttcctcctgcttctgcctgccctgactgcgtgtgtgtgcaagggaatatatggtggtggtggtggtgaggaggagggggcca
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| CDS seq | atgtcgtcgcagcagcagcagcagcacgccggtgaggcccccgcctccgccgccgccgctgcccgggcgcggctcaggtggaccgggcagctgcacgagcggttcgtcctcgccgtggcggagctcggcggcgcggacagggcgacgcccaagtccgtgctgagggccatggccgtgccggggctcaccttgtaccacctcaagagccacctccagaagtaccggcaggcggtgagccgcggcggcaatggaggcggcggaggcagcggcagcctgaacgaccggtcatcctcgtcggagcgccaaccagccgaccacgacggcgatagcgccgccgatgagccgcgcaccattgcttacgacggcgacagcgatggcgatgctaaagaagctctccgtgattcatccaggagcatggtgcagatgcagagggaagtccagaggaagctccaggagcagattgaggtcaagaggcatctgcaactgaggatggaggcacaggggaggtacctgcagtcagtgctacgcagggcgcagcaagtcctggccgaccatagcctggcaagctcgccggaggccgccacgacggagctctcggagctcgcctccgccgtggacatcgagtgcatgtcctcctcctccccgccacggcaccaccgccaatccgccgcaaccgacagctgcgtgactacgacgtcgtcgtcggaggccgagagcaaggccgccgggtccaagcggctccacaccagcgattgcaccgtcgagcagccggtgcagggcaagaggaccttcaacttcctgcaaaggcacacccaggcagatcaagaagaagaacaagaagaagaatatgcaggagcagaggatggaagctcatcagagattgatctgaacaggtag
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| Protein seq | MSSQQQQQHAGEAPASAAAAARARLRWTGQLHERFVLAVAELGGADRATPKSVLRAMAVPGLTLYHLKSHLQKYRQAVSRGGNGGGGGSGSLNDRSSSSERQPADHDGDSAADEPRTIAYDGDSDGDAKEALRDSSRSMVQMQREVQRKLQEQIEVKRHLQLRMEAQGRYLQSVLRRAQQVLADHSLASSPEAATTELSELASAVDIECMSSSSPPRHHRQSAATDSCVTTTSSSEAESKAAGSKRLHTSDCTVEQPVQGKRTFNFLQRHTQADQEEEQEEEYAGAEDGSSSEIDLNR |
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| Function | Myb-related protein 2 [UniProtKB/Swiss-Prot:Q9SQQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0016440 | OsLima_08g0016440.01 | Chr08 | 21797646 | 21799805 | - | NAM | ||
| CDS seq | atgtcgtcgcagcagcagcagcagcacgccggtgaggcccccgcctccgccgccgccgctgcccgggcgcggctcaggtggaccgggcagctgcacgagcggttcgtcctcgccgtggcggagctcggcggcgcggacagggcgacgcccaagtccgtgctgagggccatggccgtgccggggctcaccttgtaccacctcaagagccacctccagaagtaccggcaggcggtgagccgcggcggcaatggaggcggcggaggcagcggcagcctgaacgaccggtcatcctcgtcggagcgccaaccagccgaccacgacggcgatagcgccgccgatgagccgcgcaccattgcttacgacggcgacagcgatggcgatgctaaagaagctctccgtgattcatccaggagcatggtgcagatgcagagggaagtccagaggaagctccaggagcagattgaggtcaagaggcatctgcaactgaggatggaggcacaggggaggtacctgcagtcagtgctacgcagggcgcagcaagtcctggccgaccatagcctggcaagctcgccggaggccgccacgacggagctctcggagctcgcctccgccgtggacatcgagtgcatgtcctcctcctccccgccacggcaccaccgccaatccgccgcaaccgacagctgcgtgactacgacgtcgtcgtcggaggccgagagcaaggccgccgggtccaagcggctccacaccagcgattgcaccgtcgagcagccggtgcagggcaagaggaccttcaacttcctgcaaaggcacacccaggcagatcaagaagaagaacaagaagaagaatatgcaggagcagaggatggaagctcatcagagattgatctgaacaggtag
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| Protein seq | MSSQQQQQHAGEAPASAAAAARARLRWTGQLHERFVLAVAELGGADRATPKSVLRAMAVPGLTLYHLKSHLQKYRQAVSRGGNGGGGGSGSLNDRSSSSERQPADHDGDSAADEPRTIAYDGDSDGDAKEALRDSSRSMVQMQREVQRKLQEQIEVKRHLQLRMEAQGRYLQSVLRRAQQVLADHSLASSPEAATTELSELASAVDIECMSSSSPPRHHRQSAATDSCVTTTSSSEAESKAAGSKRLHTSDCTVEQPVQGKRTFNFLQRHTQADQEEEQEEEYAGAEDGSSSEIDLNR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0016440 | OsLima_08g0016440.02 | Chr08 | 21797646 | 21799805 | - | NAM | ||
| CDS seq | atgtcgtcgcagcagcagcagcagcacgccggggcgacgcccaagtccgtgctgagggccatggccgtgccggggctcaccttgtaccacctcaagagccacctccagaagtaccggcaggcggtgagccgcggcggcaatggaggcggcggaggcagcggcagcctgaacgaccggtcatcctcgtcggagcgccaaccagccgaccacgacggcgatagcgccgccgatgagccgcgcaccattgcttacgacggcgacagcgatggcgatgctaaagaagctctccgtgattcatccaggagcatggtgcagatgcagagggaagtccagaggaagctccaggagcagattgaggtcaagaggcatctgcaactgaggatggaggcacaggggaggtacctgcagtcagtgctacgcagggcgcagcaagtcctggccgaccatagcctggcaagctcgccggaggccgccacgacggagctctcggagctcgcctccgccgtggacatcgagtgcatgtcctcctcctccccgccacggcaccaccgccaatccgccgcaaccgacagctgcgtgactacgacgtcgtcgtcggaggccgagagcaaggccgccgggtccaagcggctccacaccagcgattgcaccgtcgagcagccggtgcagggcaagaggaccttcaacttcctgcaaaggcacacccaggcagatcaagaagaagaacaagaagaagaatatgcaggagcagaggatggaagctcatcagagattgatctgaacaggtag
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| Protein seq | MSSQQQQQHAGATPKSVLRAMAVPGLTLYHLKSHLQKYRQAVSRGGNGGGGGSGSLNDRSSSSERQPADHDGDSAADEPRTIAYDGDSDGDAKEALRDSSRSMVQMQREVQRKLQEQIEVKRHLQLRMEAQGRYLQSVLRRAQQVLADHSLASSPEAATTELSELASAVDIECMSSSSPPRHHRQSAATDSCVTTTSSSEAESKAAGSKRLHTSDCTVEQPVQGKRTFNFLQRHTQADQEEEQEEEYAGAEDGSSSEIDLNR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0016440 | OsLima_08g0016440.03 | Chr08 | 21797678 | 21799148 | - | IsoSeq | ||
| CDS seq | cgtgccggggctcaccttgtaccaccgccaatccgccgcaaccgacagctgcgtgactacgacgtcgtcgtcggaggccgagagcaaggccgccgggtccaagcggctccacaccagcgattgcaccgtcgagcagccggtgcagggcaagaggaccttcaacttcctgcaaaggcacacccaggcagatcaagaagaagaacaagaagaagaatatgcaggagcagaggatggaagctcatcaga
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| Protein seq | RAGAHLVPPPIRRNRQLRDYDVVVGGREQGRRVQAAPHQRLHRRAAGAGQEDLQLPAKAHPGRSRRRTRRRICRSRGWKLIR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr08 | 21799180 | 21799391 | - | OsLima_08g0016440.01 | OsLima_08g0016440.02,OsLima_08g0016440.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.091138 | 0.755785 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0434700 | RBH | 1.176749 | 1.186881 | 2.165639 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33750 | RBH | 0.780526 | 0.782976 | 0.546792 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0434700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017190 | RBH | 0.104497 | 19.788532 | 3.137330 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017070 | RBH | 0.247440 | 5.299890 | 0.430332 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017020 | RBH | 0.650489 | 15.096055 | 2.482711 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017330 | RBH | 0.144992 | 0.256520 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017180 | RBH | 3.870956 | 39.641968 | 6.244569 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0335600 | RBH | 5.1419055 | 43.424112 | 3.724929 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017070 | RBH | 0.092872 | 0.878063 | 0.474092 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0349300 | SBH | 3.952112 | 0.511476 | 13.1284935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0016710 | RBH | 0.291530 | 27.244211 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016520 | RBH | 3.867252 | 53.616112 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0017340 | RBH | 0.000000 | 1.602281 | 1.329592 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0016740 | RBH | 0.064728 | 8.723566 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016900 | RBH | 0.0 | 2.521875 | 1.911407 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017000 | RBH | 0.783367 | 29.865376 | 7.300975 |
