Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0015930 | OGI:08060540 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:21249902-21255946 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatgtggttgtagaagcttgtacacacaaaagagaggaatttgagggagagagagtgagagagaagcctagctagctagcaagcacacaccacacacatctccaaattaagcacaagaggaaacaacacacaagccacctcgatctctctccttcctctcgatcccaagaagcccaaggaagcttcctatacgtttagtggttagcgcgctcgctcgccgccgcgccgcggcgaaggagggacgacgacggacatggcgtcggcgacgtcgacgacgcccgacctgtcgctgcacatcagcctgccgagcggtggcgcggcggtggggacgacggcgccgccggggctggggaacggcggtgcggttggtggtgccggcggcggcaaggcggcgggtggtggtgacccgtggcggaggctggatggctccacggcgtcgacggagctgtcgctgtcgacgccgcagcagcagcaggagggcagtacatcggcggccgatgtgctgccgtggcggctgcggcagccgacggcggcggcggcgtccgtgccggtgacactgccgacgataccgatggatggttcggcggcggcggcgcgcgcgccgatccgtggggtgcctgtgtatagcggcggcggcggcggtggccacccgttcctcggaggcggcggcggcgaccaccggcacaaccggctctacaacccctaccactccacggcatggccctcgtcgtcgctgtgctcgacgtcgccggcgccggctcctcctcccccaccagcagctctcgacccgacgacgtcgtcgctgctgtcgccgtccgcgtaccaccggatgctctccagcacggggcgcctccacggcgtgctcgccgacaccctccgcggctacgccggcgccgctgcggtggcgggctccatcggctacggctccgcggccgccgccgccgccgccatgggcggctacggcggcgccggcgccggcggcgggttcgcctcctcccgcttcatgccgcgcctcctcccggcgtcccgccgcagcatgcgcgccccgcggatgcggtggacgagctccctccacgcccgcttcgtccacgccgtcgagcttctcggcggccacgagcgtgaggccccatctaaacatggatcatttcatgcgaaaatcagctcaaaaaatctcatctcgcgctctaatttgatgcaggagcgacgcccaaatcggtgctagagctgatggacgtcaaggatctgaccctagctcatgtgaagagccatctgcaggtgatgatgatgatgatgagatcgatgccctacctatcaacaacaccaacaacttctcctcctccttcttggaaatttccatatcatatcaccacatcgccatggccatgatcgagctaagctactacaaagcttgggaaaattgcagctgatttcccttcaaaatccgcactgctcacgcgcactgtttcttcttgttcttgctcggacactgcaccgtacgtacatggggggagagagagagaaatcgagagagtaccaggcacagattccgatgagaactccatgagagagagaaatcgaggagccctagagagagagattgtgtgtgtgtggagaagatcgatgcgtgtgggggtgtgtgcgagaaaaagttgccatcattatgcaataatgcattctgtgtgtgtcctgaccagagcacttcactcactcactcagctagggaacagaatcccagccaagaagagagagagagtgaagctgagcagcaagtgcagtaaaatttttctcaattctttcttgaggtgttctcgtgatggagtagtatttggtttgtccatttcttggtgtttttttgctttgcttttggctgccatgatctccagcttgatccatcatgttttgctgtcttttactatcctcactctgaatactccgattgataatctatttatccatcccaagaagatgcatatatatctttctttgcagctttgctttgtgccttgctttctcggtgcatgattcttttcttgctgcgctttctgcagatgtataggaccgtgaagagcactgacaagccagcagcagcctcaggtaattaacctcgaccatttcagatcatcaatccccaattaaccaattccccattgccaaattaacttcaattaacttcactaaattcattgccttattaattaaatcatcacattgtgtacactattatttgtgtgcttactagcaaacagatatgggactgaacattattgcttgtgatattattgtcttcaggaccgatggacggcagcggctccggctccggctctggcgacgacgagctcctggccggcgatggaaggcaggcgacgtcatcgggcgccgatgcggaccggcggatgtcgttcaccgagcaccggtcctcctccgagggcgcggcgagccatgccggcggtggcggcgacggcgactgctcctcctctgccgtcaactccgacaccatcagagcgcgcagcaattcgccgaggtatgcacacaaaatttggtgactaatttcgttgtttgtttgtttgtttttcagtgctttagttttgtgttatttttcctagtacatcaatagaaacttgggattgtgtttggtgctgttcgttaaaagaaaagtcttagtttggacagtaacatacatagcttaagagcaaagataacccaaacaggaagttaatcaagttgtgaacacaagctactacagtataatctggttattttggtagtggctaaagctcaaaaagatgtttggccctacacaaatcacacacaaaaagaaggagagagagagatatggataggagggcctctcccatgcatttgacttgatcagtgcatgcatgcacagccatggcctcctccttcaagatgaagatgtgtgtgtttttcttgtgctttgcaatgtcctcttcttcctcctagttcttctctctccagtggtaatagatctgctttttttaccttttcttatcaatgcatggctgcctgtgtgtgtgtgtccagggggctgtgggctttgacctcagacctgatactagctgacatcctagaaatgtgtaaccaagggcctcttcctgtgttgctttgtcctttactttccttgccattactcccagtgtctactgatactgtagcagatatactgaggttcaataataggagaaatttatgtattgggcatcaaacattgtttttttaaaaaaaaaacatgatatgaaatgctgtttatatattgacacagaaaaactctctccatcctgaaaactgacttttgtagcttgataaagctctttcaaatttgaaaattatgtaatattttgggttgttcactaaaaatgtgttccatttccatgatcatctataatctacgatgcatttatcgcctaataaatttctcaagattttaattatctcttttaagtttgtcttaagatttctgtaatgttgaccatttttatactactgcatttttttttgaaaaaaaaatggagcacaaaagtaaaaaaaaagaattgcataatttcatttttacatattttccaaactatatagcttgtgttagccattggtacgaaacatttgaatgtagggtttttttttggaatgaatatttaaatgtaggttttgcctactataaacaataaattaaagggctcatatataatcccccccaacatgcacacgcaaaggaaaaaatgaattacatccattttgagtacaacaagaacaattacaatttttagtgtctcgacctttagagttttgtttctcggaattttctcttctcggttttctatgcataaatcttgtagagaaaaatcatattggagtgcgcacattggtaaatataccaagggtagcatcattcactactagagaactgatctttgctgggtcagacgaaaaccacattaaccccagttccaataacaaccgggactaaaggtcccggactattgagggttacaatccaggacaaataagggtttctccaccagtgatttatggtgtgaaccaacttttgtatgtttttgttaaaatattacataaatagaatatattgtgggattttttaacagtttaattattaaaaacagtcttagttgaaaaataaataaaatatctaaaaatagcgatgggtttaaaagtgtatgaataatttattaatggaggagaccttcatatgcatcgtcaatgagagaaatatctagtccatgttagtaactaaatgccaattataaagtatgccatctatataactatcctagaaagaaataatacagtgtacaatagaatatttgtctagtatgaacttaacaaaagataattagtaccttttctgacataattgagctaataggtttttcaagctttttaatgtagagaagcttgttttagtgtgcatttgtgcccgcgccagttatatgcagcatggtttacatatctatgagtaacttctttctctctctgtgacagtactgtgcatgcacacatttgtaccaacacaacatataaatctttttaatggcatgttgcctagagctagagagctttgtagccagcaaacctatggctaggttcacaattttcatgattgccggtaatatgtactacaagttactactgttccaaattaaaagcattgcaaaggtagggattaattaattgggacaccaaattaaagtgctttggcctacagtgtacagtccagtcctaggctggaaatctagggttaagcatatgggtaaataaaaccatgagatcactactacAaaaaaaaaattgtagccacaaaaaaatcacttgtaataataacagggagctcctatgatctaaacccgcttccgaaaaacaattgtcaaggcggctgtcaattttcacatcaatgtccgtaatatgtatagcgaggttgcatttatttggaagcaattaatttaacttatctcaaatttagactttatttccaaataatttgcttttaggtctctattcctacctatatatgtgtgcaaatatgcatgtacttaattactaaaaaagttgaaagaacacttggtacataaaaaaggttaattagtactatggtgtatattgctaataaacttcactctgcactagtaacaattttgccaaacttctgttcagagatctatggctttcatcgagcgtgtgcaatatggatcctcaacatttggttacagttgaggtatggatactcatcagattgacctccctgtattctttccttaatatactacactgactgaccgtgtacatatatccgtgttggatgtataggccgggtttcaatccatcaaccaaaaaaacatatactacactgacatgcagtttaatttctttcctttataacttacgtggtatatattactgttttataaactacactgacacacataaatttgtacaattggatcaggacatggagccttgtagatcaagcagcttgcaagtatccagccatgaactgagcagccctagcctcgagttcacgctaggaagaccgagctggcacagcatagatcatgactagctagctagcaagctcttgcttgcttgcttgctatatatatggacccatgcattgcacattcagatatactgtttatgaccatactcagatcgatacctgcgtcgccgcgatatcagcaatgcgcgatgaaacaagacatggatgaaaaaaaattaattaggagtggtttgtttgttttgtcgaaacaacacgatagtcccctctttcactttgctctcttttttcttagtttttcattacatttttgtatttattctcaatgtgtaagtgcagtagattatattctcatgcactacatgacactaggggtgcttgaaagttgtaatgcctctttgcaacttggtgaccggtgtaatgtatcatttgcacatgaaaaaaaaaacagagaaaatatctaacctgacaatgattatattcttcttgtgatgcatatatataagtatgtgtcttctcca
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| CDS seq | atggcgtcggcgacgtcgacgacgcccgacctgtcgctgcacatcagcctgccgagcggtggcgcggcggtggggacgacggcgccgccggggctggggaacggcggtgcggttggtggtgccggcggcggcaaggcggcgggtggtggtgacccgtggcggaggctggatggctccacggcgtcgacggagctgtcgctgtcgacgccgcagcagcagcaggagggcagtacatcggcggccgatgtgctgccgtggcggctgcggcagccgacggcggcggcggcgtccgtgccggtgacactgccgacgataccgatggatggttcggcggcggcggcgcgcgcgccgatccgtggggtgcctgtgtatagcggcggcggcggcggtggccacccgttcctcggaggcggcggcggcgaccaccggcacaaccggctctacaacccctaccactccacggcatggccctcgtcgtcgctgtgctcgacgtcgccggcgccggctcctcctcccccaccagcagctctcgacccgacgacgtcgtcgctgctgtcgccgtccgcgtaccaccggatgctctccagcacggggcgcctccacggcgtgctcgccgacaccctccgcggctacgccggcgccgctgcggtggcgggctccatcggctacggctccgcggccgccgccgccgccgccatgggcggctacggcggcgccggcgccggcggcgggttcgcctcctcccgcttcatgccgcgcctcctcccggcgtcccgccgcagcatgcgcgccccgcggatgcggtggacgagctccctccacgcccgcttcgtccacgccgtcgagcttctcggcggccacgagcgagcgacgcccaaatcggtgctagagctgatggacgtcaaggatctgaccctagctcatgtgaagagccatctgcagatgtataggaccgtgaagagcactgacaagccagcagcagcctcaggaccgatggacggcagcggctccggctccggctctggcgacgacgagctcctggccggcgatggaaggcaggcgacgtcatcgggcgccgatgcggaccggcggatgtcgttcaccgagcaccggtcctcctccgagggcgcggcgagccatgccggcggtggcggcgacggcgactgctcctcctctgccgtcaactccgacaccatcagagcgcgcagcaattcgccgagagatctatggctttcatcgagcgtgtgcaatatggatcctcaacatttggttacagttgaggacatggagccttgtagatcaagcagcttgcaagtatccagccatgaactgagcagccctagcctcgagttcacgctaggaagaccgagctggcacagcatagatcatgactag
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| Protein seq | MASATSTTPDLSLHISLPSGGAAVGTTAPPGLGNGGAVGGAGGGKAAGGGDPWRRLDGSTASTELSLSTPQQQQEGSTSAADVLPWRLRQPTAAAASVPVTLPTIPMDGSAAAARAPIRGVPVYSGGGGGGHPFLGGGGGDHRHNRLYNPYHSTAWPSSSLCSTSPAPAPPPPPAALDPTTSSLLSPSAYHRMLSSTGRLHGVLADTLRGYAGAAAVAGSIGYGSAAAAAAAMGGYGGAGAGGGFASSRFMPRLLPASRRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDKPAAASGPMDGSGSGSGSGDDELLAGDGRQATSSGADADRRMSFTEHRSSSEGAASHAGGGGDGDCSSSAVNSDTIRARSNSPRDLWLSSSVCNMDPQHLVTVEDMEPCRSSSLQVSSHELSSPSLEFTLGRPSWHSIDHD |
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| Function | Probable transcription factor RL9 [UniProtKB/Swiss-Prot:Q0J235] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0015930 | OsLima_08g0015930.01 | Chr08 | 21249902 | 21255946 | + | NAM | ||
| CDS seq | atggcgtcggcgacgtcgacgacgcccgacctgtcgctgcacatcagcctgccgagcggtggcgcggcggtggggacgacggcgccgccggggctggggaacggcggtgcggttggtggtgccggcggcggcaaggcggcgggtggtggtgacccgtggcggaggctggatggctccacggcgtcgacggagctgtcgctgtcgacgccgcagcagcagcaggagggcagtacatcggcggccgatgtgctgccgtggcggctgcggcagccgacggcggcggcggcgtccgtgccggtgacactgccgacgataccgatggatggttcggcggcggcggcgcgcgcgccgatccgtggggtgcctgtgtatagcggcggcggcggcggtggccacccgttcctcggaggcggcggcggcgaccaccggcacaaccggctctacaacccctaccactccacggcatggccctcgtcgtcgctgtgctcgacgtcgccggcgccggctcctcctcccccaccagcagctctcgacccgacgacgtcgtcgctgctgtcgccgtccgcgtaccaccggatgctctccagcacggggcgcctccacggcgtgctcgccgacaccctccgcggctacgccggcgccgctgcggtggcgggctccatcggctacggctccgcggccgccgccgccgccgccatgggcggctacggcggcgccggcgccggcggcgggttcgcctcctcccgcttcatgccgcgcctcctcccggcgtcccgccgcagcatgcgcgccccgcggatgcggtggacgagctccctccacgcccgcttcgtccacgccgtcgagcttctcggcggccacgagcgagcgacgcccaaatcggtgctagagctgatggacgtcaaggatctgaccctagctcatgtgaagagccatctgcagatgtataggaccgtgaagagcactgacaagccagcagcagcctcaggaccgatggacggcagcggctccggctccggctctggcgacgacgagctcctggccggcgatggaaggcaggcgacgtcatcgggcgccgatgcggaccggcggatgtcgttcaccgagcaccggtcctcctccgagggcgcggcgagccatgccggcggtggcggcgacggcgactgctcctcctctgccgtcaactccgacaccatcagagcgcgcagcaattcgccgagagatctatggctttcatcgagcgtgtgcaatatggatcctcaacatttggttacagttgaggacatggagccttgtagatcaagcagcttgcaagtatccagccatgaactgagcagccctagcctcgagttcacgctaggaagaccgagctggcacagcatagatcatgactag
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| Protein seq | MASATSTTPDLSLHISLPSGGAAVGTTAPPGLGNGGAVGGAGGGKAAGGGDPWRRLDGSTASTELSLSTPQQQQEGSTSAADVLPWRLRQPTAAAASVPVTLPTIPMDGSAAAARAPIRGVPVYSGGGGGGHPFLGGGGGDHRHNRLYNPYHSTAWPSSSLCSTSPAPAPPPPPAALDPTTSSLLSPSAYHRMLSSTGRLHGVLADTLRGYAGAAAVAGSIGYGSAAAAAAAMGGYGGAGAGGGFASSRFMPRLLPASRRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDKPAAASGPMDGSGSGSGSGDDELLAGDGRQATSSGADADRRMSFTEHRSSSEGAASHAGGGGDGDCSSSAVNSDTIRARSNSPRDLWLSSSVCNMDPQHLVTVEDMEPCRSSSLQVSSHELSSPSLEFTLGRPSWHSIDHD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.059244 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0426866 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33050 | RBH | 0.085491 | 0.000000 | 0.067607 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0426866 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0016690 | RBH | 0.338326 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016540 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016510 | RBH | 0.200355 | 0.0 | 1.139014 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016850 | RBH | 0.066505 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0016670 | RBH | 1.479942 | 0.0 | 3.776894 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0327600 | RBH | 3.865936 | 0.2100275 | 6.9177545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0016570 | RBH | 0.183881 | 0.0 | 0.174067 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0349300 | RBH | 3.952112 | 0.511476 | 13.1284935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0009400 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0016210 | RBH | 0.350614 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016000 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0016820 | RBH | 0.087649 | 0.0 | 0.295270 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0016220 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016340 | RBH | 0.074552 | 0.0 | 0.365347 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0016470 | RBH | 0.448978 | 0.0 | 1.458338 |
