Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0015230 | OGI:08015390 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:20522185-20523354 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaggggataaaccccattacatatccaagcaaaagagctatccttaagaagggagggttaactgaacttcgaaaacaaccttcctgaaataacctaacagcagaaaaaggagcaagtcgacagggatctgcggcggagccgcgacgactgctaccctgggcctcaaaagatgtacagtccgcttgacaaaccgttaatccccatcggctgcctccacggaaacggcacaagaccgaggcttgttgcggagtcgtagattttggtgtgtgcgtcaccggactcagcaaaggatccccacggggctcatcattaaatctgaggagctctaacatcgaccctgtcaaccgaaattgctcaggtggtccgagctcaacccgaatgacaaacccaacatggtttcttctgttagggaacaacaggatgggtgaatccgaagggcagccaaccttcaacgatggagcacttgaatggctgcaaatcaacttctgtcttgctgagatgatggagatggttgagaaagagatggcctgcaccatgaagcaacgacgcaactggaagcaactggaagcaacgacgcgggagacagccctcgcgtcgccactgtcgccgcagaccgcgtccgcaccatcgctgccgttacggactggatcggcgacgctaccgtcgccacgggccgcgtccgagccgctgccgctgctgcagactggatccgcggagccgccgtcgctacgtgtcgcgtccgagtcgtcgtggccgctgcagactggatccgcggcgccgccatcggcacgggccacgtccgagccgccgtggccgctgcagactggatccgcggcgccgccatcggcacgggccgcgtccgagccgccgccgccactgcagactgaaaccgcagcggccgagccgccaccgccgctgcggacaggatccacagcgccgccgtcaccatgggccgcgtccgagccgccaccgccgctgcggactggatccgcgccgccgccatcgccacgagcctcgtccgagccgccgccgttgccgcggagctggtccgcgccgccgccgtcgccttgggtcgtttcctcgtcgccatcgcagtcacgagccacaaccttgtcgcctccaccgtcgctggcctcaatcgcgtcaccgccgccgtctccaacttccat
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| CDS seq | atggaagttggagacggcggcggtgacgcgattgaggccagcgacggtggaggcgacaaggttgtggctcgtgactgcgatggcgacgaggaaacgacccaaggcgacggcggcggcgcggaccagctccgcggcaacggcggcggctcggacgaggctcgtggcgatggcggcggcgcggatccagtccgcagcggcggtggcggctcggacgcggcccatggtgacggcggcgctgtggatcctgtccgcagcggcggtggcggctcggccgctgcggtttcagtctgcagtggcggcggcggctcggacgcggcccgtgccgatggcggcgccgcggatccagtctgcagcggccacggcggctcggacgtggcccgtgccgatggcggcgccgcggatccagtctgcagcggccacgacgactcggacgcgacacgtagcgacggcggctccgcggatccagtctgcagcagcggcagcggctcggacgcggcccgtggcgacggtagcgtcgccgatccagtccgtaacggcagcgatggtgcggacgcggtctgcggcgacagtggcgacgcgagggctgtctcccgcgtcgttgcttccagttgcttccagttgcgtcgttgcttcatggtgcaggccatctctttctcaaccatctccatcatctcagcaagacagaagttgatttgcagccattcaagtgctccatcgttgaaggttggctgcccttcggattcacccatcctgttgttccctaacagaagaaaccatgttgggtttgtcattcgggttgagctcggaccacctgagcaatttcggttgacagggtcgatgttagagctcctcagatttaatgatgagccccgtggggatcctttgctgagtccggtgacgcacacaccaaaatctacgactccgcaacaagcctcggtcttgtgccgtttccgtggaggcagccgatggggattaacggtttgtcaagcggactgtacatcttttgaggcccagggtagcagtcgtcgcggctccgccgcagatccctgtcgacttgctcctttttctgctgttaggttatttcaggaaggttgttttcgaagttcagttaaccctcccttcttaaggatagctcttttgcttggatatgtaatggggtttatcccctaa
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| Protein seq | MEVGDGGGDAIEASDGGGDKVVARDCDGDEETTQGDGGGADQLRGNGGGSDEARGDGGGADPVRSGGGGSDAAHGDGGAVDPVRSGGGGSAAAVSVCSGGGGSDAARADGGAADPVCSGHGGSDVARADGGAADPVCSGHDDSDATRSDGGSADPVCSSGSGSDAARGDGSVADPVRNGSDGADAVCGDSGDARAVSRVVASSCFQLRRCFMVQAISFSTISIISARQKLICSHSSAPSLKVGCPSDSPILLFPNRRNHVGFVIRVELGPPEQFRLTGSMLELLRFNDEPRGDPLLSPVTHTPKSTTPQQASVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGSAADPCRLAPFSAVRLFQEGCFRSSVNPPFLRIALLLGYVMGFIP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0015230 | OsLima_08g0015230.01 | Chr08 | 20522185 | 20523354 | - | NAM | ||
| CDS seq | atggaagttggagacggcggcggtgacgcgattgaggccagcgacggtggaggcgacaaggttgtggctcgtgactgcgatggcgacgaggaaacgacccaaggcgacggcggcggcgcggaccagctccgcggcaacggcggcggctcggacgaggctcgtggcgatggcggcggcgcggatccagtccgcagcggcggtggcggctcggacgcggcccatggtgacggcggcgctgtggatcctgtccgcagcggcggtggcggctcggccgctgcggtttcagtctgcagtggcggcggcggctcggacgcggcccgtgccgatggcggcgccgcggatccagtctgcagcggccacggcggctcggacgtggcccgtgccgatggcggcgccgcggatccagtctgcagcggccacgacgactcggacgcgacacgtagcgacggcggctccgcggatccagtctgcagcagcggcagcggctcggacgcggcccgtggcgacggtagcgtcgccgatccagtccgtaacggcagcgatggtgcggacgcggtctgcggcgacagtggcgacgcgagggctgtctcccgcgtcgttgcttccagttgcttccagttgcgtcgttgcttcatggtgcaggccatctctttctcaaccatctccatcatctcagcaagacagaagttgatttgcagccattcaagtgctccatcgttgaaggttggctgcccttcggattcacccatcctgttgttccctaacagaagaaaccatgttgggtttgtcattcgggttgagctcggaccacctgagcaatttcggttgacagggtcgatgttagagctcctcagatttaatgatgagccccgtggggatcctttgctgagtccggtgacgcacacaccaaaatctacgactccgcaacaagcctcggtcttgtgccgtttccgtggaggcagccgatggggattaacggtttgtcaagcggactgtacatcttttgaggcccagggtagcagtcgtcgcggctccgccgcagatccctgtcgacttgctcctttttctgctgttaggttatttcaggaaggttgttttcgaagttcagttaaccctcccttcttaaggatagctcttttgcttggatatgtaatggggtttatcccctaa
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| Protein seq | MEVGDGGGDAIEASDGGGDKVVARDCDGDEETTQGDGGGADQLRGNGGGSDEARGDGGGADPVRSGGGGSDAAHGDGGAVDPVRSGGGGSAAAVSVCSGGGGSDAARADGGAADPVCSGHGGSDVARADGGAADPVCSGHDDSDATRSDGGSADPVCSSGSGSDAARGDGSVADPVRNGSDGADAVCGDSGDARAVSRVVASSCFQLRRCFMVQAISFSTISIISARQKLICSHSSAPSLKVGCPSDSPILLFPNRRNHVGFVIRVELGPPEQFRLTGSMLELLRFNDEPRGDPLLSPVTHTPKSTTPQQASVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGSAADPCRLAPFSAVRLFQEGCFRSSVNPPFLRIALLLGYVMGFIP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.002579 | 0.006878 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0195400 | SBH | 0.209027 | 0.214363 | 8.676631 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33190 | SBH | 0.600506 | 0.300607 | 0.470378 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0195400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0016800 | SBH | 0.477146 | 0.000000 | 1.711081 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016670 | SBH | 0.126721 | 2.484740 | 1.751542 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016630 | SBH | 1.646858 | 2.773443 | 2.718975 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016970 | SBH | 0.120456 | 0.081107 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006330 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0329500 | SBH | 16.5317075 | 30.0103655 | 34.457222 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0351100 | SBH | 15.675984 | 35.9716075 | 91.0736545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0016940 | SBH | 1.133412 | 0.527035 | 0.525859 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006170 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005710 | RBH | 0.0 | 0.0 | 0.0 |
