Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0015010 | OGI:08057380 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:20328632-20330293 | ||||||||
| Gene Symbol | ERF48, OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170, OsDRAP1, DRAP1, OsERF48/OsDRAP1 | ||||||||||
| DNA seq | cccaaacccaaacgactgagacccactactccgagccatcaagaacacacacatccagaaagcctaatccaatccaaaagccctaatcacccagactccatctctgtgaggtttgagagaggtaggtgagccgtagatctgagcgagttcttgggtcttccagcaggtagatcacttcatctgaggatcaatctttttttttcctttgtttttgagcttctgttggtgtacaggacagagagttccagagccttttagtttctggtgttctgatctgttcttggtgtaagattattggtctgatttggtagccaagagggttaattttttccacacctccttgtgctagttagcttagcttataccccccttgtaaagtgattagtagatctagaacttctcttttcgtctgccagttcttggattttggaaagaacaggtggtttgttattcagatttttaggttagaaaaaatccacaaaaaaaaagatattcgatggcagctgctatagaaggaaatctgatgcgggcgctgggagaggctccgtcgccgcagatgcagaagatcgcgccgccgccgtttcatcccggcttgccgccggcgccggcgaacttctcctcggccggagtccacgggttccactacatgggcccggcccagctcagcccggcccagatccagcgcgtccaggcccaactccacatgcagcggcaggcccagtcggggctcggcccgcgggcccagcccatgaagcccgcttcggcggctgctccggcggcggcggcggcgcgggcgcagaagctgtaccgcggcgtgcggcagcggcactggggcaagtgggtggcggagatccggctgccgcgcaaccgcaccaggctctggctcggcaccttcgacaccgccgaggaggcggcgctcacctacgaccaggccgcgtaccgcctccgcggcgacgcggcgcggctcaacttcccggacaacgccgcgtcgcggggcccgctcgacgccgccgtggacgccaagctccaggccatctgcgacaccatcgccgcgtccaagaacgcctcatccaggtccaggggcggcgccggcagggccatgcccatcaatgcgcccctggtcgccgcggcgtcgtcgtcctccggctccgaccactccggcggcggcgacgacggcggctcggagacgtcgtcgtcgtctgcggcggcgtcgccgctggcgatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcaccaagtacccgtcgtacgagatcgactgggactcgctgctcaacaacaataactagctcttctcctccatagcccgccattgccggccggcgcagatgaggttttaggcattctgcgcggcggcgaggcgatggattatatgttcgttcttgtgtagatccttttctttttgtgttggttttttaggttccggaggctgctcgccggcgtcgtttttgtgtccggcgtctccgatgtctagtaagcagtgactcgttagtgtagtagttgtacaactctacaaatgtacaaatacttgtgcatgtaggttgttgtaatcaattgttggtaactacctgtaatagaactactgtgaattaactgtatcaatgtgcaaatcttc
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| CDS seq | atggcagctgctatagaaggaaatctgatgcgggcgctgggagaggctccgtcgccgcagatgcagaagatcgcgccgccgccgtttcatcccggcttgccgccggcgccggcgaacttctcctcggccggagtccacgggttccactacatgggcccggcccagctcagcccggcccagatccagcgcgtccaggcccaactccacatgcagcggcaggcccagtccaggggcggcgccggcagggccatgcccatcaatgcgcccctggtcgccgcggcgtcgtcgtcctccggctccgaccactccggcggcggcgacgacggcggctcggagacgtcgtcgtcgtctgcggcggcgtcgccgctggcgatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcaccaagtacccgtcgtacgagatcgactgggactcgctgctcaacaacaataactag
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| Protein seq | MAAAIEGNLMRALGEAPSPQMQKIAPPPFHPGLPPAPANFSSAGVHGFHYMGPAQLSPAQIQRVQAQLHMQRQAQSRGGAGRAMPINAPLVAAASSSSGSDHSGGGDDGGSETSSSSAAASPLAMEQLDFSEVPWDEAEGFALTKYPSYEIDWDSLLNNNN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0015010 | OsLima_08g0015010.01 | Chr08 | 20329128 | 20329967 | + | NAM | ||
| CDS seq | atggcagctgctatagaaggaaatctgatgcgggcgctgggagaggctccgtcgccgcagatgcagaagatcgcgccgccgccgtttcatcccggcttgccgccggcgccggcgaacttctcctcggccggagtccacgggttccactacatgggcccggcccagctcagcccggcccagatccagcgcgtccaggcccaactccacatgcagcggcaggcccagtccaggggcggcgccggcagggccatgcccatcaatgcgcccctggtcgccgcggcgtcgtcgtcctccggctccgaccactccggcggcggcgacgacggcggctcggagacgtcgtcgtcgtctgcggcggcgtcgccgctggcgatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcaccaagtacccgtcgtacgagatcgactgggactcgctgctcaacaacaataactag
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| Protein seq | MAAAIEGNLMRALGEAPSPQMQKIAPPPFHPGLPPAPANFSSAGVHGFHYMGPAQLSPAQIQRVQAQLHMQRQAQSRGGAGRAMPINAPLVAAASSSSGSDHSGGGDDGGSETSSSSAAASPLAMEQLDFSEVPWDEAEGFALTKYPSYEIDWDSLLNNNN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0015010 | OsLima_08g0015010.02 | Chr08 | 20328632 | 20330293 | + | IsoSeq | ||
| CDS seq | atgcgcccctggtcgccgcggcgtcgtcgtcctccggctccgaccactccggcggcggcgacgacggcggctcggagacgtcgtcgtcgtctgcggcggcgtcgccgctggcgatggagcagctggacttcagcgaggtgccgtgggacgaggcggaggggttcgcgctcaccaagtacccgtcgtacgagatcgactgggactcgctgctcaacaacaataactagctcttctcct
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| Protein seq | MRPWSPRRRRPPAPTTPAAATTAARRRRRRLRRRRRWRWSSWTSARCRGTRRRGSRSPSTRRTRSTGTRCSTTITSSSP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.693060 | 0.291714 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0408500 | RBH | 1.917984 | 4.590199 | 5.815153 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31580 | RBH | 1.255226 | 2.990048 | 1.466264 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0408500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015620 | RBH | 2.094303 | 15.359977 | 6.850081 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015480 | RBH | 0.344671 | 8.339330 | 3.028092 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015410 | RBH | 3.328534 | 25.510328 | 7.031875 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015730 | RBH | 0.486823 | 0.440754 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015530 | RBH | 16.135004 | 26.781643 | 16.028866 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0311200 | RBH | 17.0406545 | 181.470871 | 250.5154955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015490 | RBH | 0.750992 | 1.907281 | 1.673922 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0332900 | RBH | 31.955678 | 231.102211 | 50.7921545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007920 | RBH | 1.197518 | 0.749667 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015150 | RBH | 2.178208 | 20.189419 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015050 | RBH | 4.184917 | 39.297302 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015780 | RBH | 2.212742 | 1.684554 | 3.240725 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015170 | RBH | 0.000000 | 0.144723 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015280 | RBH | 0.853709 | 7.307559 | 3.428357 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015410 | RBH | 3.102453 | 46.844032 | 12.848567 |
