Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0014830 | OGI:08056690 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:20035247-20036313 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acaatctgtgctttgaatttgttagagatcagggcggcttgattaagcaagattaattcattcaagattcaaccatgaggctgttcgaggagccaccggcgaagctcacccactgggctcacccggagcacgagctgacgctggccgccaccgccggcgcgccgttccggtgcgacgggtgccaggagcccggcggcgacgggccgaggtacaggtgcgcgccgtgcaacttcgacctccacaccgactgcgccctcccgccggccaccctgcagcacccgctcctcttcaagggcggcggctgcaccttcgtcttcctccgcgagccccccgcgcccgccgccgccagccggcagtgcgacgcgtgcggcgacgacgtgcgcgggttcgtcttccactgcgccgaccgcgacctcgacctccacccgtgctgcgcgagcttggaggaccgcatcgtcacgggcgggggcggcgacggcgacggccgcgtcttcgagctcaccaaggcggcgtcgtcgtcgtcgtcgcggcgccgctgcggcgtctgcggggacaagtcgcgcaggacgttctggttctaccgcggccgcttcgacggcgaggacgtgttcatccacgtggcgtgcgtgaaggagctcgccgtgcggaggtgggaggcgagctaccgccgccgcagcggcgccggccagatcgcgctcgccggcgcgccgctcatggagggcgccctgcagagcctgccaaggaggacgcggcggagcggcgggttcgagcggttcagcaagatcgtgggtgtcatcgtgagcgccataatcgccgtcatcttcgggaatccgatggggttgatcgccgcggtggccggccctgacggtcttctccgcgggtagaagacgagtggaaaacagtgtgctgctaattagcaacagtcaacgagtgcgtcacgtgtagagtgttcttctctatgatttttttttcttcgtataaacccgaatgttttatttttaattaatcttgtggtgggtttggaatattttgaataaagattggttcgttcatttatgcatgtttcg
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| CDS seq | atgaggctgttcgaggagccaccggcgaagctcacccactgggctcacccggagcacgagctgacgctggccgccaccgccggcgcgccgttccggtgcgacgggtgccaggagcccggcggcgacgggccgaggtacaggtgcgcgccgtgcaacttcgacctccacaccgactgcgccctcccgccggccaccctgcagcacccgctcctcttcaagggcggcggctgcaccttcgtcttcctccgcgagccccccgcgcccgccgccgccagccggcagtgcgacgcgtgcggcgacgacgtgcgcgggttcgtcttccactgcgccgaccgcgacctcgacctccacccgtgctgcgcgagcttggaggaccgcatcgtcacgggcgggggcggcgacggcgacggccgcgtcttcgagctcaccaaggcggcgtcgtcgtcgtcgtcgcggcgccgctgcggcgtctgcggggacaagtcgcgcaggacgttctggttctaccgcggccgcttcgacggcgaggacgtgttcatccacgtggcgtgcgtgaaggagctcgccgtgcggaggtgggaggcgagctaccgccgccgcagcggcgccggccagatcgcgctcgccggcgcgccgctcatggagggcgccctgcagagcctgccaaggaggacgcggcggagcggcgggttcgagcggttcagcaagatcgtgggtgtcatcgtgagcgccataatcgccgtcatcttcgggaatccgatggggttgatcgccgcggtggccggccctgacggtcttctccgcgggtag
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| Protein seq | MRLFEEPPAKLTHWAHPEHELTLAATAGAPFRCDGCQEPGGDGPRYRCAPCNFDLHTDCALPPATLQHPLLFKGGGCTFVFLREPPAPAAASRQCDACGDDVRGFVFHCADRDLDLHPCCASLEDRIVTGGGGDGDGRVFELTKAASSSSSRRRCGVCGDKSRRTFWFYRGRFDGEDVFIHVACVKELAVRRWEASYRRRSGAGQIALAGAPLMEGALQSLPRRTRRSGGFERFSKIVGVIVSAIIAVIFGNPMGLIAAVAGPDGLLRG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0014830 | OsLima_08g0014830.01 | Chr08 | 20035247 | 20036313 | + | NAM | ||
| CDS seq | atgaggctgttcgaggagccaccggcgaagctcacccactgggctcacccggagcacgagctgacgctggccgccaccgccggcgcgccgttccggtgcgacgggtgccaggagcccggcggcgacgggccgaggtacaggtgcgcgccgtgcaacttcgacctccacaccgactgcgccctcccgccggccaccctgcagcacccgctcctcttcaagggcggcggctgcaccttcgtcttcctccgcgagccccccgcgcccgccgccgccagccggcagtgcgacgcgtgcggcgacgacgtgcgcgggttcgtcttccactgcgccgaccgcgacctcgacctccacccgtgctgcgcgagcttggaggaccgcatcgtcacgggcgggggcggcgacggcgacggccgcgtcttcgagctcaccaaggcggcgtcgtcgtcgtcgtcgcggcgccgctgcggcgtctgcggggacaagtcgcgcaggacgttctggttctaccgcggccgcttcgacggcgaggacgtgttcatccacgtggcgtgcgtgaaggagctcgccgtgcggaggtgggaggcgagctaccgccgccgcagcggcgccggccagatcgcgctcgccggcgcgccgctcatggagggcgccctgcagagcctgccaaggaggacgcggcggagcggcgggttcgagcggttcagcaagatcgtgggtgtcatcgtgagcgccataatcgccgtcatcttcgggaatccgatggggttgatcgccgcggtggccggccctgacggtcttctccgcgggtag
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| Protein seq | MRLFEEPPAKLTHWAHPEHELTLAATAGAPFRCDGCQEPGGDGPRYRCAPCNFDLHTDCALPPATLQHPLLFKGGGCTFVFLREPPAPAAASRQCDACGDDVRGFVFHCADRDLDLHPCCASLEDRIVTGGGGDGDGRVFELTKAASSSSSRRRCGVCGDKSRRTFWFYRGRFDGEDVFIHVACVKELAVRRWEASYRRRSGAGQIALAGAPLMEGALQSLPRRTRRSGGFERFSKIVGVIVSAIIAVIFGNPMGLIAAVAGPDGLLRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0404500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0404500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015440 | RBH | 0.0 | 2.459361 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015300 | RBH | 0.065073 | 0.000000 | 1.209302 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015230 | RBH | 0.761456 | 0.000000 | 3.803999 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015530 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015330 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0306000 | RBH | 0.082391 | 2.660441 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015360 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0328300 | SBH | 0.151841 | 5.5338125 | 0.0471165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014960 | RBH | 0.458085 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014870 | RBH | 6.147139 | 17.014177 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015580 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014990 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015230 | RBH | 0.0 | 0.0 | 0.0 |
