Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0014510 | OGI:08055850 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:19615758-19620055 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctctgagagagtgggccccacgcggcagcgacgcacgcatgataggctcgtagccctcgccgtcgtcgtcttcctcctcctcctcctcgcgccgtggagaggattccatcctcctccctctccccgccgccgccgtcaatcccgaatcccgagggctcgggtggtcgtcgtcggtccgggatggcggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgctctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtgcccaccagcgcctctccttccacgccggcgagcgccacgccttggtacgccccgagctaaaatcgccccctccccaagtcccaccctttccagtcgggtgaacttctggtcagttttgcaatcgaaagattagattatttgtttttttggccccttttcctcgatttctttcagttcttggatcgaaagatttttggtgttgcggtgcgggtgggacgctgaacattttgagtcatggggcttctttcttcagaatttttgttttcgctacttacattttgtggagaattgaactctcgattttcacctttttgctaggttctgtgcatataaagctgcaatatttgctatattctgtcttcagctgtggtgaaattgtgcggagaTtttttattttggtgttcactgctattcatgtttggttttagttgccacttatgagttatgacaacaattgtttcttgatgcaaattttgctcagttaattcacacttttaatttgtgtgggcgtcatcacaccatctgaaattgcagtttatcgctacttcatgatgactgaaacctaaatgcatctttgttttcatcattggtattctcgtttaattgcagaaatcgtggtttgttgtgaatttgtttaccatcagttagtcaaacttaggtggaaatgtttcaattctgtattccaagacacaagttagattgtgctcttgtcgttcaaaaaaaagaaagaagttagattgtgctaatagtaataaagagataaaaaaagggattggcgtacagaacataatagagaaacgtatgggacaggtttccttctacactatttctaaaggatctttgacaagtttccttttgcttgtttggtgttcacaattaaaaagtagtactgttaggtgtaggtatgcttttctaatcttaaaaggcatgttttttttttctcatcttaaagcattgcaataagcaaattctaggttggaagattagccaaaattatcccccctgtgatagattttagctataattgttttggtgctgtaagacagcttgctgggagtgctctttaagttttacaagtttgccttcatcaacttgtgctaaactagtccacctgtactacatgttctgttattgtgcattagttcattttggttgtggttcaatcttctcctataagttttgaatgacttagaagaggcaataccaccgaaactaccattgcctactgaaacaccaattgagatttaaaatctgatggaccttttggttcaccaacaggctgcagtaattcatgggaggacacagtgatattgtgtaatgaatttggcatacttgaatgcgttgttccttacaaaaagcttaagtgatggtggcacagtaccaaatacataattgatttagtcatctggtcccccatttgtgttaatatggtatagatagacaagtattttagttgtttaaatcaatcctcagggattgtgtccatacaacaggacaataatttgtgctatgatgcacaaacccaattgcatatactggtgcttagcatttttcgtgctcttgtttagattgatagattatgcttggtaataatgtgcagccattttgttttattcaggaaaaactctaccagtggatggtgcgacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccaggtccagatttctatttgtagactaatcacactcttattgtactacatatagttcactttcacatctatgatctgttcactgaacctctcagctaggctgtagtattatgaacgatgatatttcatcacatttcattaatagctcttgtccttactccttacccatgtagccatgtttatgggtttttcttgaatgtagcacgagattgagtatggaggtgacaatgcattaacttcaccgagatcgcaacacgcattccagaatctccaagctccaatgcacatccccaacacaagcacgcagcagccgccatcttgttcaatcacaccatcaaacccttccaaggactctatgatattttcgaaagcgctatccagccctgtccggcaaaacctgcaactgtaccatgtacagcaaggcggtgacacaggatgctttgcagatggcattttttgccctggaaaccgtgactcggatcctgcagcatcaaatgattcgtcggtggatatgcattcagatagcccaggtcatgactcatgagccctgattcctgaatgagcaattaccattttccagtttgattccatgaactgcaatcaacaaacttgcagtaaagaagtggaattgccctcacgcaatctgggatctcaatttaatccctcacccaagttaacttgtaatttgtaactagctattgcccagttacctcagatataacgtgcacatatatatcatccatgtatgtactttcagattaaataatagctgacgtatcagtttcttttggtactaaacagtgaacactgatcagtaatttcagattgcaaaactttaagctagcttatatagctgtttcttcggttaagtgtcgcaaatgttaatcgtatataatttctttggggtaaatatgtgatgaaaactcaatttaagtgaaaactcgtgcaaacaccaatcaaaaagttgtctaaattttttttaaaaaaaaatcacaaatgtagatatgatgatattttgtaaccatgtaaaaaaatcctgttcaaatttgattttgtttgtaagaaataaaaatataaaattccaaaaaatataaaattgttatttttatatctcacaaacaaagtaaaagcaatatagaaattcagaatacttttagtaagtgttatttgtgtactcaatttggcagaagctatatatatcgtggccgtgggaaccagaaaccgtacgatccctatggtatgaaatgtataaacaacaggaacaatgcactaatgcatctaatgagcacattatttatatttctaaaacaataagattgataattatatacttcacccatgaacaaaaaaaataaattatgagcgacaaaacaaggaccccagacatcctaccgtcctgaatgcaataaattaaatcactgtaaaaattcctgtcattcttgcatctgtaatcgtcaagctctttgtcagccaccaaatggaagatgtaagcatgttgtatctatcatcaagcacttcctttaccacaaaacagaaaaaatacactgttctagtacaaacatatctatagttgcattacacttagagataatttacatgaagaccaatctaaattcatccactctcagaatattcttctttctttggcactcatcttgctgctgtgacctcattcggatcaatgatgtacccaacagggtttccacggcccactgaggccctacgagacagcgaagggggccgacccagctgaacattggctgggacagggatttcatcagagtgaccagaaatgcagagtgatccattgtcatcttgatcccagtaaacttcaaccatcacgcctcttgggtgatcctccgactcggttccgggaattccgacaaaacgagccccctttggtatctgcattgccatagaaaatggaagtgatatcaaagagatattcagagttttctgaagaaatcacacaatcaaattacagcatagcagcaagtttcagagttttctgtactgttgctgctgtacagaagttctctacatagcagtgagattatccttttcatgtccaatattgcagcattgttattaggggtactaaggaacaaacctgaatagatgaacctgatgataggttcagagtaaccagggtgccttcagcagtagagctctccagttctgcctgctttgcgatgttcaggaatacttcttcgagcgtcgtgaggccgagttgaatgtctgagataccgaattcccgttccctgtcttggagttccccaaagaacctctgcttaatgga
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| CDS seq | atggcggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgctctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtgcccaccagcgcctctccttccacgccggcgagcgccacgccttggaaaaactctaccagtggatggtgcgacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacgagattgagtatggaggtgacaatgcattaacttcaccgagatcgcaacacgcattccagaatctccaagctccaatgcacatccccaacacaagcacgcagcagccgccatcttgttcaatcacaccatcaaacccttccaaggactctatgatattttcgaaagcgctatccagccctgtccggcaaaacctgcaactgtaccatgtacagcaaggcggtgacacaggatgctttgcagatggcattttttgccctggaaaccgtgactcggatcctgcagcatcaaatgattcgtcggtggatatgcattcagatagcccagggtttccacggcccactgaggccctacgagacagcgaagggggccgacccagctga
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| Protein seq | MAGRKRKAEAARAAEEEADRALYGAFRGAANSLSQLYALAGAHQRLSFHAGERHALEKLYQWMVRQHEIGLRLTVSDIASHIQHEIEYGGDNALTSPRSQHAFQNLQAPMHIPNTSTQQPPSCSITPSNPSKDSMIFSKALSSPVRQNLQLYHVQQGGDTGCFADGIFCPGNRDSDPAASNDSSVDMHSDSPGFPRPTEALRDSEGGRPS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0014510 | OsLima_08g0014510.01 | Chr08 | 19615758 | 19620055 | + | NAM | ||
| CDS seq | atggcggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgctctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtgcccaccagcgcctctccttccacgccggcgagcgccacgccttggaaaaactctaccagtggatggtgcgacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacgagattgagtatggaggtgacaatgcattaacttcaccgagatcgcaacacgcattccagaatctccaagctccaatgcacatccccaacacaagcacgcagcagccgccatcttgttcaatcacaccatcaaacccttccaaggactctatgatattttcgaaagcgctatccagccctgtccggcaaaacctgcaactgtaccatgtacagcaaggcggtgacacaggatgctttgcagatggcattttttgccctggaaaccgtgactcggatcctgcagcatcaaatgattcgtcggtggatatgcattcagatagcccagggtttccacggcccactgaggccctacgagacagcgaagggggccgacccagctga
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| Protein seq | MAGRKRKAEAARAAEEEADRALYGAFRGAANSLSQLYALAGAHQRLSFHAGERHALEKLYQWMVRQHEIGLRLTVSDIASHIQHEIEYGGDNALTSPRSQHAFQNLQAPMHIPNTSTQQPPSCSITPSNPSKDSMIFSKALSSPVRQNLQLYHVQQGGDTGCFADGIFCPGNRDSDPAASNDSSVDMHSDSPGFPRPTEALRDSEGGRPS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0014510 | OsLima_08g0014510.02 | Chr08 | 19615758 | 19618609 | + | NAM | ||
| CDS seq | atggcggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgctctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtgcccaccagcgcctctccttccacgccggcgagcgccacgccttggaaaaactctaccagtggatggtgcgacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacgagattgagtatggaggtgacaatgcattaacttcaccgagatcgcaacacgcattccagaatctccaagctccaatgcacatccccaacacaagcacgcagcagccgccatcttgttcaatcacaccatcaaacccttccaaggactctatgatattttcgaaagcgctatccagccctgtccggcaaaacctgcaactgtaccatgtacagcaaggcggtgacacaggatgctttgcagatggcattttttgccctggaaaccgtgactcggatcctgcagcatcaaatgattcgtcggtggatatgcattcagatagcccaggtcatgactcatga
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| Protein seq | MAGRKRKAEAARAAEEEADRALYGAFRGAANSLSQLYALAGAHQRLSFHAGERHALEKLYQWMVRQHEIGLRLTVSDIASHIQHEIEYGGDNALTSPRSQHAFQNLQAPMHIPNTSTQQPPSCSITPSNPSKDSMIFSKALSSPVRQNLQLYHVQQGGDTGCFADGIFCPGNRDSDPAASNDSSVDMHSDSPGHDS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.210363 | 0.178821 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0397900 | RBH | 0.850743 | 0.967820 | 4.991967 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g30730 | RBH | 0.575317 | 0.650940 | 1.126920 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0397900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015100 | RBH | 1.645771 | 7.232991 | 4.473345 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014950 | RBH | 0.356848 | 0.000000 | 2.635201 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0014900 | RBH | 4.036512 | 4.046857 | 11.956424 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015190 | RBH | 0.362835 | 0.122574 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014960 | RBH | 6.940112 | 7.047392 | 6.410311 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0300900 | RBH | 12.916635 | 23.0323105 | 12.248718 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014980 | RBH | 0.513096 | 0.438390 | 1.188104 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0322500 | RBH | 11.606816 | 29.388659 | 13.9623875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007390 | RBH | 0.227386 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014610 | RBH | 0.500185 | 5.458916 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014530 | RBH | 4.763616 | 6.746313 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015230 | RBH | 1.422627 | 0.000000 | 0.635941 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014630 | RBH | 0.304943 | 4.245381 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014730 | RBH | 0.544147 | 1.647088 | 1.341982 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014870 | RBH | 1.297791 | 10.109404 | 2.501915 |
