Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0013580 | OGI:08051830 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:18152372-18153970 | ||||||||
| Gene Symbol | RLCK253, OsRLCK253 | ||||||||||
| DNA seq | tagctaccctctactcatcaattaccttaaggaggtcgagcgcctcctggaggttggctacgacctccgtcatgggcggacgctccttcccctgtgagtgcacgcagcgtcctgccgtccgcgccaccacctctgtcgcctttagctgccttggcgttggcttcagccctgggcccctatcgagctccttcatcaaatccccagcctccatgtttggcagcacggatgcaaccaagcttgtggcaacaacggcgccgtgcttctcgtcgtgaattgccttcttccccgtcagaagctctagcatcacgacgccgaagctgtacacgtcgctcgccggcgtcaggttccccgtgctcaggtactcggggtccatgtactcgaacgtgcctaagataggcatctcggccgtacactctacctcgtcgcagcttaccgccaagccgaagtccgacaagcgaggggcgtagctggagtcgagcaggatgttggacagcttgacgtcccggtggatcaccggcggcacggcgtgggagtgaaggtgctcgatggcccgcgacacgcctactagtatctcgatgcgcgtcttccacgatgtggtcaccagtgatgatgctccatctgatccgtggaggtgatcgtagagcgtgccgttgtcgatgtactcgtagacaaggaggcagtcctcgtcctcagccgacgacgtcgtcgtcgccgccgccgcaacgcagcagccaaggaggcggacgatgtggtcgtggcggagcggggagaggattgcgagctccctcaggaaatcccccttcctgcgcggagatgcgcatctgatggccacctcgcgccggtcgggaagccttcccttgtacatcatcatgccaaagctgcggccttcaccgatctgcctgtccacggcgaagttgttggtcgccatcgcgagctgtggcatggtgaatttctcgcattcgccgtccccatggagtacctaatataaataacacaaaagcacagagtagtgatgagtttcatcaaaaataaggaagaggtagctagcttgatctacgattcctctaccagccgtcgttgaagcagggactgggagtctgcagagggagatgccatggtcctgcaatcgccctcgccggttgaaatgagcattctgtggatctggtcgaggcagtggatgatgtcgatgtggctgatgatggggaggaagaggaggtaggagtcgatcctagtctgcacgttcctgatcttgtcagccagccgccacgccatcacgaaccggtaggttgggctcttctgctggcagcaagtcacgagctcgtgagcctcctgcagcgtgtcctcgagcaaggccagcggccgcaggacctccggccgccgcatcacctccggatgttgcaggtgcggcagcaggtcgtagatcatggacgcgcggacggcgagatgctcgcactccctcttgttctggcgagccgtcgcggccgcctggatgatcttggagatgagccccccgaggttcgccccgacaagctgcgccaccgttgccgcattccccagctcaccccacatcttgcaaactctctcgaggattaactaact
More
|
||||||||||
| CDS seq | atgtggggtgagctggggaatgcggcaacggtggcgcagcttgtcggggcgaacctcggggggctcatctccaagatcatccaggcggccgcgacggctcgccagaacaagagggagtgcgagcatctcgccgtccgcgcgtccatgatctacgacctgctgccgcacctgcaacatccggaggtgatgcggcggccggaggtcctgcggccgctggccttgctcgaggacacgctgcaggaggctcacgagctcgtgacttgctgccagcagaagagcccaacctaccggttcgtgatggcgtggcggctggctgacaagatcaggaacgtgcagactaggatcgactcctacctcctcttcctccccatcatcagccacatcgacatcatccactgcctcgaccagatccacagaatgctcatttcaaccggcgagggcgattgcaggaccatggcatctccctctgcagactcccagtccctgcttcaacgacggctggtactccatggggacggcgaatgcgagaaattcaccatgccacagctcgcgatggcgaccaacaacttcgccgtggacaggcagatcggtgaaggccgcagctttggcatgatgatgtacaagggaaggcttcccgaccggcgcgaggtggccatcagatgcgcatctccgcgcaggaagggggatttcctgagggagctcgcaatcctctccccgctccgccacgaccacatcgtccgcctccttggctgctgcgttgcggcggcggcgacgacgacgtcgtcggctgaggacgaggactgcctccttgtctacgagtacatcgacaacggcacgctctacgatcacctccacggatcagatggagcatcatcactggtgaccacatcgtggaagacgcgcatcgagatactagtaggcgtgtcgcgggccatcgagcaccttcactcccacgccgtgccgccggtgatccaccgggacgtcaagctgtccaacatcctgctcgactccagctacgcccctcgcttgtcggacttcggcttggcggtaagctgcgacgaggtagagtgtacggccgagatgcctatcttaggcacgttcgagtacatggaccccgagtacctgagcacggggaacctgacgccggcgagcgacgtgtacagcttcggcgtcgtgatgctagagcttctgacggggaagaaggcaattcacgacgagaagcacggcgccgttgttgccacaagcttggttgcatccgtgctgccaaacatggaggctggggatttgatgaaggagctcgataggggcccagggctgaagccaacgccaaggcagctaaaggcgacagaggtggtggcgcggacggcaggacgctgcgtgcactcacaggggaaggagcgtccgcccatgacggaggtcgtagccaacctccaggaggcgctcgacctccttaaggtaattgatgagtag
More
|
||||||||||
| Protein seq | MWGELGNAATVAQLVGANLGGLISKIIQAAATARQNKRECEHLAVRASMIYDLLPHLQHPEVMRRPEVLRPLALLEDTLQEAHELVTCCQQKSPTYRFVMAWRLADKIRNVQTRIDSYLLFLPIISHIDIIHCLDQIHRMLISTGEGDCRTMASPSADSQSLLQRRLVLHGDGECEKFTMPQLAMATNNFAVDRQIGEGRSFGMMMYKGRLPDRREVAIRCASPRRKGDFLRELAILSPLRHDHIVRLLGCCVAAAATTTSSAEDEDCLLVYEYIDNGTLYDHLHGSDGASSLVTTSWKTRIEILVGVSRAIEHLHSHAVPPVIHRDVKLSNILLDSSYAPRLSDFGLAVSCDEVECTAEMPILGTFEYMDPEYLSTGNLTPASDVYSFGVVMLELLTGKKAIHDEKHGAVVATSLVASVLPNMEAGDLMKELDRGPGLKPTPRQLKATEVVARTAGRCVHSQGKERPPMTEVVANLQEALDLLKVIDE |
||||||||||
| Function | Putative serine/threonine-protein kinase-like protein CCR3 [UniProtKB/Swiss-Prot:Q9LY50] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0013580 | OsLima_08g0013580.01 | Chr08 | 18152372 | 18153970 | - | NAM | ||
| CDS seq | atgtggggtgagctggggaatgcggcaacggtggcgcagcttgtcggggcgaacctcggggggctcatctccaagatcatccaggcggccgcgacggctcgccagaacaagagggagtgcgagcatctcgccgtccgcgcgtccatgatctacgacctgctgccgcacctgcaacatccggaggtgatgcggcggccggaggtcctgcggccgctggccttgctcgaggacacgctgcaggaggctcacgagctcgtgacttgctgccagcagaagagcccaacctaccggttcgtgatggcgtggcggctggctgacaagatcaggaacgtgcagactaggatcgactcctacctcctcttcctccccatcatcagccacatcgacatcatccactgcctcgaccagatccacagaatgctcatttcaaccggcgagggcgattgcaggaccatggcatctccctctgcagactcccagtccctgcttcaacgacggctggtactccatggggacggcgaatgcgagaaattcaccatgccacagctcgcgatggcgaccaacaacttcgccgtggacaggcagatcggtgaaggccgcagctttggcatgatgatgtacaagggaaggcttcccgaccggcgcgaggtggccatcagatgcgcatctccgcgcaggaagggggatttcctgagggagctcgcaatcctctccccgctccgccacgaccacatcgtccgcctccttggctgctgcgttgcggcggcggcgacgacgacgtcgtcggctgaggacgaggactgcctccttgtctacgagtacatcgacaacggcacgctctacgatcacctccacggatcagatggagcatcatcactggtgaccacatcgtggaagacgcgcatcgagatactagtaggcgtgtcgcgggccatcgagcaccttcactcccacgccgtgccgccggtgatccaccgggacgtcaagctgtccaacatcctgctcgactccagctacgcccctcgcttgtcggacttcggcttggcggtaagctgcgacgaggtagagtgtacggccgagatgcctatcttaggcacgttcgagtacatggaccccgagtacctgagcacggggaacctgacgccggcgagcgacgtgtacagcttcggcgtcgtgatgctagagcttctgacggggaagaaggcaattcacgacgagaagcacggcgccgttgttgccacaagcttggttgcatccgtgctgccaaacatggaggctggggatttgatgaaggagctcgataggggcccagggctgaagccaacgccaaggcagctaaaggcgacagaggtggtggcgcggacggcaggacgctgcgtgcactcacaggggaaggagcgtccgcccatgacggaggtcgtagccaacctccaggaggcgctcgacctccttaaggtaattgatgagtag
More
|
|||||||
| Protein seq | MWGELGNAATVAQLVGANLGGLISKIIQAAATARQNKRECEHLAVRASMIYDLLPHLQHPEVMRRPEVLRPLALLEDTLQEAHELVTCCQQKSPTYRFVMAWRLADKIRNVQTRIDSYLLFLPIISHIDIIHCLDQIHRMLISTGEGDCRTMASPSADSQSLLQRRLVLHGDGECEKFTMPQLAMATNNFAVDRQIGEGRSFGMMMYKGRLPDRREVAIRCASPRRKGDFLRELAILSPLRHDHIVRLLGCCVAAAATTTSSAEDEDCLLVYEYIDNGTLYDHLHGSDGASSLVTTSWKTRIEILVGVSRAIEHLHSHAVPPVIHRDVKLSNILLDSSYAPRLSDFGLAVSCDEVECTAEMPILGTFEYMDPEYLSTGNLTPASDVYSFGVVMLELLTGKKAIHDEKHGAVVATSLVASVLPNMEAGDLMKELDRGPGLKPTPRQLKATEVVARTAGRCVHSQGKERPPMTEVVANLQEALDLLKVIDE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0374701 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28710 | RBH | 0.161171 | 0.082467 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0374600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014110 | RBH | 0.126314 | 0.0 | 0.421681 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014010 | RBH | 0.0 | 0.0 | 0.428023 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013980 | RBH | 0.0 | 0.0 | 1.627366 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014020 | RBH | 0.0 | 0.0 | 0.748846 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0276600 | RBH | 0.0873465 | 2.780089 | 12.952668 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014070 | RBH | 0.0 | 0.0 | 0.053244 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0299600 | RBH | 0.620968 | 4.9547045 | 0.019445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013620 | RBH | 0.128271 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013530 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014310 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013680 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013670 | RBH | 0.0 | 0.0 | 0.235933 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013830 | RBH | 0.000000 | 0.0 | 0.000000 |
