Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0012130 | OGI:08044720 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:15108906-15109279 | ||||||||
| Gene Symbol | SPS2, OsSPS2 | ||||||||||
| DNA seq | tcagaagaagctcaccgatttcagattattgtttagtttcagcaggtcgtcggagacaacctccaaaagtgaagaaacagaaattcgctcagggatcattgttgttgtcgtcgcattagaaatcgcctctgctggcacatcaattgcagcaaggcctgcacaaaaacgctaagtcgttagctcactccaaaacacagctgctcaacagaccaataagaacaagagctgcaggatgaagaacctggctggctcggtgaggccacgaaacaaacacatggcatgcaccgcctcggggccacccgcatgctagaccggccggcccaactgcaccggcaggaggccatctgaccgaaatccagcgccttcctgctcat |
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| CDS seq | atgagcaggaaggcgctggatttcggtcagatggcctcctgccggtgcagttgggccggccggtctagcatgcgggtggccccgaggcggtgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggccttgctgcaattgatgtgccagcagaggcgatttctaatgcgacgacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactaaacaataatctgaaatcggtgagcttcttctga |
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| Protein seq | MSRKALDFGQMASCRCSWAGRSSMRVAPRRCMPCVCFVASPSQPGLAAIDVPAEAISNATTTTMIPERISVSSLLEVVSDDLLKLNNNLKSVSFF |
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| Function | Solanesyl-diphosphate synthase 2, chloroplastic [UniProtKB/Swiss-Prot:Q75HZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0012130 | OsLima_08g0012130.01 | Chr08 | 15108906 | 15109279 | - | NAM | ||
| CDS seq | atgagcaggaaggcgctggatttcggtcagatggcctcctgccggtgcagttgggccggccggtctagcatgcgggtggccccgaggcggtgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggccttgctgcaattgatgtgccagcagaggcgatttctaatgcgacgacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactaaacaataatctgaaatcggtgagcttcttctga
More
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| Protein seq | MSRKALDFGQMASCRCSWAGRSSMRVAPRRCMPCVCFVASPSQPGLAAIDVPAEAISNATTTTMIPERISVSSLLEVVSDDLLKLNNNLKSVSFF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.434859 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0582300 | SBH | 34.465977 | 31.246561 | 16.670919 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50550 | SBH | 19.369726 | 18.112455 | 3.675889 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0582300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0012610 | RBH | 0.445315 | 0.000000 | 4.036485 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012740 | RBH | 0.224517 | 0.000000 | 0.746549 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012790 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0012720 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012540 | RBH | 0.000000 | 0.000000 | 3.919437 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0242000 | RBH | 1.2829595 | 3.2104075 | 2.6076195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012640 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0466200 | SBH | 90.8655965 | 5.733213 | 5.208337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028010 | SBH | 6.545329 | 0.516069 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012310 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012190 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012980 | RBH | 0.286484 | 0.466860 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012210 | RBH | 0.487474 | 2.751724 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012400 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0012340 | RBH | 0.000000 | 0.000000 | 0.000000 |
