Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0011770 | OGI:08040680 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:14778422-14783890 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatgtcgtggttggtagcagtggacgatctttaatgttgttcagttcggagttaaaattccggctaagtcctgtcgaaatgttttcacttccttctgcataatgcaaagggagtgcattttaaatggtttttcgtattgggaagcactggtgcaaaatatgaatagaggttgttgtagttgcctgtagttgaatttctgggagataagatccgctccaatgctccatgaacttaagggtgtacaggccacacgagaagctacaagaatttagtcgttaggctaacatgtttgcgtaattgaataatgtgaatatcatgtggaagagtttgagtcacccacccgtctccttgctttggcaagttttggactttgttgtactcctattcggtaatattgaaatcaggccaatcgtgttttaactgtgggtgctgattctctgtcccgtgtaatcccctctcgatagctagcagctggaaagttttgtgcaacgttggtacggttaaaacatagcaaaaccaatttgaatTAtacaagtggaagtgtattgcttaccacacgtcttagatcaggtcgatctttactgattggctttgcgagcgaatctagtatttgcacctcacatcgcttggcgttaagaacggctaggtaccagtgtgtatctttaatattAattgggaggaaaatctgcatatgttcattgttcaacactaagatagagtcataaattgaattagccattacatagatagagtcataaattgaattagccattacatagatagcttgaataagtattaccatgtcaaatgctagatagtcgcgtgccatatctctaatccatcgtttatctccctctacatttagtagacctgttttcatggccatctctaggaaggccttgccatctcccctgattcctttctctttatagcggaggcataggatgtatgcatccatgacctgaatttgaggttagttcagttatataacaaatatagttataaaagaatagtaggcttgttAaatagacgaacttacatcatcattcaagaattctggttgtgttagtactttcattcttatccgtttaacctccacttcttcaatatgcaccatcactttgttatcctccgtGttattaatgtaggtaatgaacgggtcttcTtttttagtcaactctacgaaggttggacaaattagtaatagatctatagaaatgttaaatggttagtcattaccttctgaattttttaacattgtttggccattcgttttttttcttcttttgacctcataaggcgttctttggtggtccgttgtctatgTTTttttgggtaagatattccttctttatgtatactagaaaagggtaagtcaaatcagtaacacacaaacatagaatataagtaaaaaattatggatgatgtagagagttcatacattcggatatttcattcggtgtttggttgtcttgtttcctcttcttttcaccccgtaattcgccTgtgtCtggcatgtaattaagCTTctttattcgtttgcgcttgaaaaggagtaaagttagtaccattgacatgagcatatgcaactatgaaatagcatagtacctattgttttctttgtctgtgcttgggttttgattatgtccttctttttaccccttgtttcgtagatgaagtcagtccgattagttggtttgtatgttcttcctgtaggacctgtaagcatcttcctgctttgattgctctggttactattgtcctgttaggtaataaagtgcacgttagtattatgataagttgtagtaacgttagtgagagaaataaaattcagtttaccttcgtttcacaagtcatgtttacaTtttggtttatataggactcttcgttatgatttgatacatgctcccttggatcaatttgttcttgttcaacatcctgcaatagcgtcaaccttttttttagcggtgttacgtaagtaataatgattaacagtctagcatatgatctttacctcaaacacatgcgtactatctttttgctctgggcattttgaatcattttccatgcaatctagtatcaatgatcgcatacgtggccaaaaatcctttgtgaaatcgttgaaattatcttgtaaagtttggatgctttcttgtaacttttcttgtaaagtgatgtcggttgattgttcagtggatgttatagagtgtacctgaatagcacaagtgagaaaaggatgtcaaacatattttgttaaatagagttcgtattaaaaccccataATatatacctcttcagaagtgccttgaaaatcttcattgctacgtgtttctgagtcattgtcctgcgctttttcatcggggatttcattgcaatgtatagttcccctaatgtcgtcgacaacctatttttagtgaaaaaggtgtattagagattttacagacagttgatatagttagtacatagtaTtaaaaatgagatagttaccttcccttgtccaaaaaggtaagaaattctttttttTTCtTttttttttgtcccagtactaaattagtggcctttgacgaccagaatgatatattgtcgcagccaatttatctattcgcactttttcccaataccaaatctgcaaagcatttgtacataagataattagtattgctatgaaaatatgttcatgacaattttgtaaagaaactcaattttgaaacgaacctgtaagaggcatacgttcccctcaatgtttgttggcttctctctaaattttaatatgcctttcagtaactgattcagtgttagactagaccagtttagttccctcatgttgtcaacgtcgtcgacgagattgagatattctgagcgcacatatctttgagttgtaggacatatgaaggatccaattgagaaaagaataaatcttcgaatgaagtggtcatcgtagctcaaggagttgattattgcttcccgtaatgcttgtaaagtaattgttgtttggccttccttttttacaggttgaacaattctggtttattgatttttggtgcctcaaatatgtcatctctttttgatggcagtccaagcaaacaatcaacatcatcgagtgtcatcgttacgaaagtaccattaatattgaatgctttcttctccttgtcatagcttcttgcaatctcattgcacaagtttcggtcaatatgtatgttgtcaatcTttagcaagttgccaagacctgaaccctcgatagcttccttttgacgtggacttagatggagtattacctcgtacatggcatgtggagagcaaactagagttccctgattaacagaaaagataataagagTttagtccatgtgAaaatttatgcaagtgctcatatatatgattgcacattaccaaacctagagtcaattaatcctgctagaaatcaattagaaatcaaaggaaataattaatcctgctctggcatgttactcgtctgacatgttgaagtgatgtcctccatcactgttctggcagtctatatggccctctctataatttgttcaatgttcattcttatgtgcaggattcagtgaggttgaggagtttgaggggagcaacatgagtgaggtcttcgagggcaacatagtactgtcaggtttgtgccaccttcacccatgaccacatccctcactttggtttgaaagtttgaaagtgtgaaattctgaaCatatagtggctaatatagatcggtcgtcgaggcgtggtaattatattgaaatttccaatcaattctaacatatattcagtataattcataagatctcaattgggttgacgattcaacaaatataattaagattgtctggatggaatatcatgcatgattgtgtttctaaggtagatggtcacagtgtgtcTGtgtgtggcgtagccctgctattttacttctttaatcatgaggccaacatttccggattcaacataaatatgcactgcatgtttccaatttcattgctcatgaggccagcaccatatttcagacagtaaaaaagacaggctcagaaagcagtataaccgtttctaagagtttgaattgttgtagtattaacaaaattaacaaacagtaggtgctaatgaagtgctatagtgccattgagtttacatcatctccgcacattgttggctgaaatttaaacttgtaatcTtggaagaacaggcatgcaacccattataaccagtatctgaaagttggtttcttatattacagagtaaatcaTtttctttgttgtaggagattacatatcatggaacctgtgctttcagacatctgtgtataccctgacagtgaccaggattagatcttcatttttagacagtctaaaactaaactaggtcaccaacggaaacacatatgaaaacattgagcctctctgaatatgctacatctaagttttacctctttagatttgtggagaacaccatgagtttggataaaaatataagaaatcctgatttccttgattggctgtagataaattattttatacttaagtcagcgatgacccctatttgttaatgCcagatcttcgacatgaatcttacactttgTttttgttatgcaatctatataaattctcatcataatatggctatgataattacttgtatgacttcgttatgattctcagaaatcctaactAattctcactaatcaataatatatatcccaatacatcagcacacatgaatctttgctactgcagggcgtcgccagtgccattgtcagcttcccgccacaaacgcctctggatctcaaatccaccaCgtcgaagcaggggttggtcaggccggcagaccatctacggctgcgcctaacactccccgcaggtacattgcttcatcccattgCTcccataggcttttagtttttttttttttggcaaaaagtcgagacaaaaagttatatgccctaatggcatgtggatgtcatgtaattactaaatttttagcatgctgaatatataacatggatatgttgctttggattaatatcactgtcttctcaaaaaattaggtgccattctgttcgttttttgtatggagtatgacaagTAtataaaatagttgtatgcagtaggacaggtatataaattaggtgccattctcTTtttttttttatggagttgtacaagTAtattttttgggatatcttgccgtgctatgtactctgtgtggctgctacatcctctatacaattgctccagagactagccagagcttaaaagaggcacacagtaaaatcaggggagagactatattcgttaataatctaatcatatgtgctgtaattatcgttgcgccttagacctattgcaactttggcttgaggagtctaagatttcgacaactgatgtatacaagagctgaaagtgaatgttgtatgtaaaaagacgtacccgttttttCttctgttggcttgtgcccgtcat
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| CDS seq | atgacgggcacaagccaacagaaGaaaaaacggccaatcaaggaaatcaggatttcttatatttttatccaaactcatggtgttctccacaaatctaaagagggaactctagtttgctctccacatgccatgtacgaggtaatactccatctaagtccacgtcaaaaggaagctatcgagggttcaggtcttggcaacttgctaaAgattgacaacatacatattgaccgaaacttgtgcaatgagattgcaagaagctatgacaaggagaagaaagcattcaatattaatgaatatctcaatctcgtcgacgacgttgacaacatgagggaactaaactggtctagtctaacactgaatcagttactgaaaggcatattaaaatttagagagaagccaacaaacattgaggggaacgtatgcctcttacaggttgtcgacgacattaggggaactatacattgcaatgaaatccccgatgaaaaagcgcaggacaatgactcagaaacacgtagcaatgaagattttcaaggcacttctgaagaggtacactctataacatccactgaacaatcaaccgacatcactttacaagaaaagttacaagaaagcatccaaactttacaagataatttcaacgatttcacaaaggatttttggccacgtatgcgatcattgatactagattgcatggaaaatgattcaaaatgcccagagcaaaaagatagtacgcatgtgtttgaggatgttgaacaagaacaaattgatccaagggagcatgtatcaaatcataacgaagagtcctatataaaccaaaAtgtaaacatgacttgtgaaacgaaggacaatagtaaccagagcaatcaaagcaggaagatgcttacaggtcctacaggaagaacatacaaaccaactaatcggactgacttcatctacgaaacaaggggtaaaaagaaggacataatcaaaacccaagcacagacaaagaaaacaatagatctattactaatttgtccaaccttcgtagagttgactaaaaaAgaagacccgttcattacctacattaataaCacggaggataacaaagtgatggtgcatattgaagaagtggaggttaaacggataagaatgaaagtactaacacaaccagaattcttgaatgatgatgtcatggatgcatacatcctatgcctccgctataaagagaaaggaatcaggggagatggcaaggccttcctagagatggccatgaaaacagaaggaagtgaaaacatttcgacaggacttagccggaattttaactccgaactgaacaacattaaagatcgtccactgctaccaaccacgacataa
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| Protein seq | MTGTSQQKKKRPIKEIRISYIFIQTHGVLHKSKEGTLVCSPHAMYEVILHLSPRQKEAIEGSGLGNLLKIDNIHIDRNLCNEIARSYDKEKKAFNINEYLNLVDDVDNMRELNWSSLTLNQLLKGILKFREKPTNIEGNVCLLQVVDDIRGTIHCNEIPDEKAQDNDSETRSNEDFQGTSEEVHSITSTEQSTDITLQEKLQESIQTLQDNFNDFTKDFWPRMRSLILDCMENDSKCPEQKDSTHVFEDVEQEQIDPREHVSNHNEESYINQNVNMTCETKDNSNQSNQSRKMLTGPTGRTYKPTNRTDFIYETRGKKKDIIKTQAQTKKTIDLLLICPTFVELTKKEDPFITYINNTEDNKVMVHIEEVEVKRIRMKVLTQPEFLNDDVMDAYILCLRYKEKGIRGDGKAFLEMAMKTEGSENISTGLSRNFNSELNNIKDRPLLPTTT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0011770 | OsLima_08g0011770.01 | Chr08 | 14778422 | 14783890 | - | NAM | ||
| CDS seq | atgacgggcacaagccaacagaaGaaaaaacggccaatcaaggaaatcaggatttcttatatttttatccaaactcatggtgttctccacaaatctaaagagggaactctagtttgctctccacatgccatgtacgaggtaatactccatctaagtccacgtcaaaaggaagctatcgagggttcaggtcttggcaacttgctaaAgattgacaacatacatattgaccgaaacttgtgcaatgagattgcaagaagctatgacaaggagaagaaagcattcaatattaatgaatatctcaatctcgtcgacgacgttgacaacatgagggaactaaactggtctagtctaacactgaatcagttactgaaaggcatattaaaatttagagagaagccaacaaacattgaggggaacgtatgcctcttacaggttgtcgacgacattaggggaactatacattgcaatgaaatccccgatgaaaaagcgcaggacaatgactcagaaacacgtagcaatgaagattttcaaggcacttctgaagaggtacactctataacatccactgaacaatcaaccgacatcactttacaagaaaagttacaagaaagcatccaaactttacaagataatttcaacgatttcacaaaggatttttggccacgtatgcgatcattgatactagattgcatggaaaatgattcaaaatgcccagagcaaaaagatagtacgcatgtgtttgaggatgttgaacaagaacaaattgatccaagggagcatgtatcaaatcataacgaagagtcctatataaaccaaaAtgtaaacatgacttgtgaaacgaaggacaatagtaaccagagcaatcaaagcaggaagatgcttacaggtcctacaggaagaacatacaaaccaactaatcggactgacttcatctacgaaacaaggggtaaaaagaaggacataatcaaaacccaagcacagacaaagaaaacaatagatctattactaatttgtccaaccttcgtagagttgactaaaaaAgaagacccgttcattacctacattaataaCacggaggataacaaagtgatggtgcatattgaagaagtggaggttaaacggataagaatgaaagtactaacacaaccagaattcttgaatgatgatgtcatggatgcatacatcctatgcctccgctataaagagaaaggaatcaggggagatggcaaggccttcctagagatggccatgaaaacagaaggaagtgaaaacatttcgacaggacttagccggaattttaactccgaactgaacaacattaaagatcgtccactgctaccaaccacgacataa
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| Protein seq | MTGTSQQKKKRPIKEIRISYIFIQTHGVLHKSKEGTLVCSPHAMYEVILHLSPRQKEAIEGSGLGNLLKIDNIHIDRNLCNEIARSYDKEKKAFNINEYLNLVDDVDNMRELNWSSLTLNQLLKGILKFREKPTNIEGNVCLLQVVDDIRGTIHCNEIPDEKAQDNDSETRSNEDFQGTSEEVHSITSTEQSTDITLQEKLQESIQTLQDNFNDFTKDFWPRMRSLILDCMENDSKCPEQKDSTHVFEDVEQEQIDPREHVSNHNEESYINQNVNMTCETKDNSNQSNQSRKMLTGPTGRTYKPTNRTDFIYETRGKKKDIIKTQAQTKKTIDLLLICPTFVELTKKEDPFITYINNTEDNKVMVHIEEVEVKRIRMKVLTQPEFLNDDVMDAYILCLRYKEKGIRGDGKAFLEMAMKTEGSENISTGLSRNFNSELNNIKDRPLLPTTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g25250 | RBH | 1.128481 | 0.847861 | 0.608387 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0012250 | SBH | 0.052250 | 0.000000 | 2.116392 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012380 | SBH | 0.297801 | 0.326272 | 0.477722 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012430 | SBH | 1.430775 | 0.000000 | 2.980220 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0012350 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012190 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0236100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012280 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0250500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011950 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012610 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011840 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012030 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011980 | RBH | 0.0 | 0.0 | 0.0 |
