Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0011330 | OGI:08042510 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:14155960-14161656 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtggttgaagtgcaaatgagccaggttcggcagtgtgtcctgcggctctgaagataaccattttggaaacgcgtcaccagggaacccatctataaagatgtactgcaagtttcgtgatggacagagcttgttgtagatctcctcgatgttcttcacttcactgtcctcgtagcttgttcgacaatcagcttcttcacccattgtacaggtaaggccgagctctttgaggtgacgcttgttgcacaacacgggtgaagctggcggtgaggctttctccagcttgatcagcaagaggcgccgtatcttggagagactatctagttcatccaatcggaacccgccagtaccatcttggaaaactgatcgaagattatccatgcatcggaaattaccgatccctttgggaacttggggtcagtgctgtgccacctatattgaggaagcttatcgtggacagcgtcatcagactcgccggcagcgatgccaatttttcgcaaccagacactgagaggtattcaaggcaggtaaggtttccgatggatcccggaagttgcttgatttcttcattacagctgacatccagcagcctcaacagcaccaggtgcccaactgactctggtatgctctggaggcctgctccaactagaattaagatgcgaagatgctccagcttcctgtaaatgtccctcttgactgatctgcatgcgtcgtggtgatacactaggaggcaccgtaggtttttctggtcttgtataccaggtatttcctcaacggcgttgccaaccgctaaacgccgaacatttggaGgggtttcgtcctcatccatgaacacggcttcgtctcttgtcaagtattggccaagcaaccttagtagatcatgcatggtagaaattcccttgtctatgtactctggtcttgcctgcagtagatttctcatgattagctcgtggtagtaatcttcagctacctcctgtatcggtctgctgccctctttcttcacaaagccttcagcaatccagaagtaagtgacatctcggtgaatatggaaattttgaggcatcaaggcacaccagaggaaacagctcttaagctgtggggataagtcattgtaacttaaatacaaggggccttgtatttcttctggaagtccttcataacaccatctgctctccaggactctagcccattcttccttcgtttgccttcgaggacaggacacctgcaacggccttgatggcaagaggaagcccatcacatttcttgacaatctgtgatccaatatcaccgaatacatttatttcgtcttcggttcggaatgatctgaagaagttccaggccatcatgttccttcagcttgtgcacttcgtgaacatgtatcgcgTtcatctgtgacaaaacatcacggctccttgtggtaacaagtacatgggcatccgcacatctctctattggggaccgaagaagatcaatccagatatgtgaacttgtcatattatccaacacaaggaagatactttgtccagtgatacaatttagtagagcttgtagaagttgatccttactcttgccctgataagactgtcctcctgccttttcaatggcctccttcagcaagtcagtctctgagatgctctcagaaattgacagccatataaggacatggtgaaacctctcccttatccttcgatcattgtatatcttctgagctaaagttgtcttgccaattcctcccatccctaggatcccgtaaactgatatggtgctctgatggccacatccaatgatcatttgaaccatatcatcagtagtttccttgatttctcttccgacaacatcaagttcatcaaccaaagcagccacatacctactaacaccgtttctttggagagtttgaggactcctcattgccagtggaacaaacatcttgctgttcattgtgatttgcacaagcctttcatttacatatttgattcttctggcaatcctgtaatcaagtggaagttgtgccagcctagagaacaggacacgatcacaacatcgctgcttgtacgagtgagctctcaaaaaatctacaatgtcgtcaacatcatacataacatccttcacatcactccaccatgttcctgtcactctattttccaaggccaaagcatcggcatcttcattaacagaatcaaagtacttcagagattcacggagcctcctgATatctcttctcacaaataatgtcttcacaaattcctcccacagtatcccaaccagcttttctaaacatttggatgacaaacacactaaaattgtccccatcgtctatgcttgtggcctgatctacagaacaaatttagaggtcttataaattgcagataccaatgcaagtcctggaaacacatttagatcgaacgccagtacctgaaaatggagatggctggaggtgttgaagcactttgagtgagcttgcgttgacctgcagcatagagtgttcaggcaggggaggtaaagcgaccctggattgctggaacaaggaaattgttgaggcacatgttgcaacactttctgtatgtctgtgtgtgtgtgtgtgtggcaactatgattcctgataaggcctgagaaccctgacaacctggtttgtcacccccttgccaatattatattttgaaacaagacaggctgcagggcacaatgacttaagttcaccaaaacttgttaaagtaaatggagcaagaagcatattagcagagtatgtccacatgcaatgctatcaacaaaaataaataattgtgatatgtgttttaaaactaagtattttttttctatgtccacactaacctaacacgttacttattgcaattgattagttgtcaacaccagtagtaaataatatattcctagttaataaagaaaggctaggagctattgttgatttggacaagtcaccaacatgcagatcatttttctattgTtgattattgctagcaacagtacatcattgactttctttgcagatcattttgactgttgcactgttgccgtctggttcctttctctccagaactttggtaattagtacacatggtttctaccactggcaacaaaccatgcaaaaccttatcaaaatgatgttgttactctcgaatatgaatcgttgtgtaatgaacatgtagttaaaatagcttgttaaagctagcaatccaagtatacataatttgttaaagcagcttgcttgcaaagatttattctagcgaaggcattcttaatgtggcagttaactaatctacatttgctatcattgttgtaggtatttgatgtggcatgcttgccgatgtgacagtggcctgatttttcaaatgaggtgcagccaaggctttggtaaagcacaaagtttgtgaggcagactaccaacagaacgatcggtgatgccagaacactcactacatcctgctcattgatgttatcaactgtaatgtgcagttgagcttaccatgagggcctgcaactgaagaaacaaataagaacggtaattgcaatttgaaatttcagatagagactgagcacaatgaaattgaacaagtagtaatagtcgttctatttgaatcaagcaaagcaatgagtagctatagggccttgaacaatgaagcaatcatttcacgatcgattaccttgaagaaacaatttgtcaacctgaaaataaaacctgatatgtacatgacacttaggatgaggttttgaggagaaaaggaatgccgggccctaaagactctacaggatacaaggcttatcagcctgagtgaaggtgatgcaacactgttttcctaacatatgtggactacttcaacagttgaggttgactctgatggattttgaaatggcgtgcaaaatattagggcaacaccctgaatggttcagtctgaaCctacccaagttgcaggactagcaacatctagtgaccgagattgaaaagaagagccaatatataatagcttgctgaagtactatatcatttatttgatcgagtaggcatgaacaattgaacacctcgaagagtgggactgagataaataatgttgcttcatgatcttgtgaagactttcacattatacacacagaccactgagaaatttcagcactacgatatggtaaataaaacagcgaccagacaccagagtatctgtagtgctgggtttagccaatgaacaggaaggtggtattgttgtcacaaatacattgtagtgaggcttacagaaaggtagactcaaactactggtctactgcagacaagaggagcattcacatttatctgtaaaacattgttttcatgaaagggaagggtagtcattttttaagattctgataatAaagcaatacctgcagaagggtgctcgtattggccacagaaggatcataggcctgctagcttcattttgatggatctgggctaaaagaaatagtatcaacccattgatcaaatcaacacatggagttcagtagagattattctaaaatcaaatgtaaatggtataattgctatacctcaagaacaatccattgatctgttcatttcgaaagcagcaaaccaggaaacaaagagcagaagcagagcaaaagcaaaagaagaaagcatgagtacaagcaaaggaattacatatacaggcaccttatgataaaatcacaaccggaagatttaaacagaaagagaaaaaacaatcggtcaaaaaaaatctgcaccagcatatacatccaattcaggtcgagatggcaaactgattaagcataacgcgtgaaacacatgtagcaaaagaaacataagtaatccctcaattcatgatcctcataaattagagctcaaaaataaaaAgGCaaatatttcatcattggataattatgagaagaataaagagggaatagagtatggatccaaaacatgacaaaaaaatttgctcggtgaagttatttttatatctacaatgatcaggtacctgcctgttaaacaaagtttgcaagacagtcaatgtatcaaatacacataagaagcttggttaaaaacttctcagggttcctcctaactacagtaaattagcaacatgaattagaagagagcatcaacataatctactgcacAaaaaaaaaattgctaatatccggaatttagtgaagatgagcatttaaattgtttccagtgcatagttaatgtaaacaagttaagagataaataacataaatgttctgctatgttttgaaagtaatcacattttacctactactgtaaagaagttgactgatttattacctgggattgctccttcctcttttgattgtagtcacatattctgaagaagtctcctcctggtcagagttcaaggaagcatgagcccctaaattaaacatcggcagcacttaaattttctttgaatttgccatgttatgtctgcaactacgggaaagcttttcacattcggctttgtatttgcaatcgaattacctcgaggcgaagtgcctggcactgggtaacggcggggtgagatcagcgctcaactcgagaggagcgagcagagaggcgcgcatcatccgcggcgaatcagcccttcccctacttgatggttgatgcgcggtgtgggcggcggcggcggcgcctacaacaacaatgccaattaagcttccgccgcgggtctcgcgctcccgaatcccgatccgattcat
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| CDS seq | atgaatcggatcgggattcgggagcgcgagacccgcggcggaagcttaattggcattgttgttgtaggcgccgccgccgccgcccacaccgcgcatcaaccatcaagtaggggaagggctgattcgccgcggatgatgcgcgcctctctgctcgctcctctcgagttgagcgctgatctcaccccgccgttacccagtgccaggcacttcgcctcgagggtcgctttacctcccctgcctgaacactctatgctgcaggtcaacgcaagctcactcaaagtgcttcaacacctccagccatctccattttcagaaaagctggttgggatactgtgggaggaatttgtgaagacattatttgtgagaagagatATcaggaggctccgtgaatctctgaagtactttgattctgttaatgaagatgccgatgctttggccttggaaaatagagtgacaggaacatggtggagtgatgtgaaggatgttatgtatgatgttgacgacattgtagattttttgagagctcactcgtacaagcagcgatgttgtgatcgtgtcctgttctctaggctggcacaacttccacttgattacaggattgccagaagaatcaaatatgtaaatgaaaggcttgtgcaaatcacaatgaacagcaagatgtttgttccactggcaatgaggagtcctcaaactctccaaagaaacggtgttagtaggtatgtggctgctttggttgatgaacttgatgttgtcggaagagaaatcaaggaaactactgatgatatggttcaaatgatcattggatgtggccatcagagcaccatatcagtttacgggatcctagggatgggaggaattggcaagacaactttagctcagaagatatacaatgatcgaaggataagggagaggtttcaccatgtccttatatggctgtcaatttctgagagcatctcagagactgacttgctgaaggaggccattgaaaaggcaggaggacagtcttatcagggcaagagtaaggatcaacttctacaagctctactaaattgtatcactggacaaagtatcttccttgtgttggataatatgacaagttcacatatctggattgatcttcttcgatcattccgaaccgaagacgaaataaatgtattcggtgatattggatcacagattgtcaagaaatgtgatgggcttcctcttgccatcaaggccgttgcaggctttgtgaagaaagagggcagcagaccgatacaggaggtagctgaagattactaccacgagctaatcatgagaaatctactgcaggcaagaccagagtacatagacaagggaatttctaccatgcatgatctactaaggttgcttggccaatacttgacaagagacgaagccgtgttcatggatgaggacgaaacccCtccaaatgttcggcgtttagcggttggcaacgccgttgaggaaatacctggtatacaagaccagaaaaacctacggtgcctcctagtgtatcaccacgacgcatgcagatcagtcaagagggacatttacaggaagctggagcatcttcgcatcttaattctagttggagcaggcctccagagcataccagagtcagttgggcacctggtgctgttgaggctgctggatgtcagctgtaatgaagaaatcaagcaacttccgggatccatcggaaaccttacctgccttgaatacctctcagtgtctggttgcgaaaaattggcatcgctgccggcgagtctgatgacgctgtccacgataagcttcctcaatataggtggcacagcactgaccccaagttcccaaagggatcgtctctccaagatacggcgcctcttgctgatcaagctggagaaagcctcaccgccagcttcacccgtgttgtgcaacaagcgtcacctcaaagagctcggccttacctgtacaatgggtgaagaagctgattgtcgaacaagctacgaggacagtgaagtgaagaacatcgaggagatctacaacaagctctgtccatcacgaaacttgcagtacatctttatagatgggttccctggtgacgcgtttccaaaatggttatcttcagagccgcaggacacactgccgaacctggctcatttgcacttcaaccactga
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| Protein seq | MNRIGIRERETRGGSLIGIVVVGAAAAAHTAHQPSSRGRADSPRMMRASLLAPLELSADLTPPLPSARHFASRVALPPLPEHSMLQVNASSLKVLQHLQPSPFSEKLVGILWEEFVKTLFVRRDIRRLRESLKYFDSVNEDADALALENRVTGTWWSDVKDVMYDVDDIVDFLRAHSYKQRCCDRVLFSRLAQLPLDYRIARRIKYVNERLVQITMNSKMFVPLAMRSPQTLQRNGVSRYVAALVDELDVVGREIKETTDDMVQMIIGCGHQSTISVYGILGMGGIGKTTLAQKIYNDRRIRERFHHVLIWLSISESISETDLLKEAIEKAGGQSYQGKSKDQLLQALLNCITGQSIFLVLDNMTSSHIWIDLLRSFRTEDEINVFGDIGSQIVKKCDGLPLAIKAVAGFVKKEGSRPIQEVAEDYYHELIMRNLLQARPEYIDKGISTMHDLLRLLGQYLTRDEAVFMDEDETPPNVRRLAVGNAVEEIPGIQDQKNLRCLLVYHHDACRSVKRDIYRKLEHLRILILVGAGLQSIPESVGHLVLLRLLDVSCNEEIKQLPGSIGNLTCLEYLSVSGCEKLASLPASLMTLSTISFLNIGGTALTPSSQRDRLSKIRRLLLIKLEKASPPASPVLCNKRHLKELGLTCTMGEEADCRTSYEDSEVKNIEEIYNKLCPSRNLQYIFIDGFPGDAFPKWLSSEPQDTLPNLAHLHFNH |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0011330 | OsLima_08g0011330.01 | Chr08 | 14155960 | 14161656 | - | NAM | ||
| CDS seq | atgaatcggatcgggattcgggagcgcgagacccgcggcggaagcttaattggcattgttgttgtaggcgccgccgccgccgcccacaccgcgcatcaaccatcaagtaggggaagggctgattcgccgcggatgatgcgcgcctctctgctcgctcctctcgagttgagcgctgatctcaccccgccgttacccagtgccaggcacttcgcctcgagggtcgctttacctcccctgcctgaacactctatgctgcaggtcaacgcaagctcactcaaagtgcttcaacacctccagccatctccattttcagaaaagctggttgggatactgtgggaggaatttgtgaagacattatttgtgagaagagatATcaggaggctccgtgaatctctgaagtactttgattctgttaatgaagatgccgatgctttggccttggaaaatagagtgacaggaacatggtggagtgatgtgaaggatgttatgtatgatgttgacgacattgtagattttttgagagctcactcgtacaagcagcgatgttgtgatcgtgtcctgttctctaggctggcacaacttccacttgattacaggattgccagaagaatcaaatatgtaaatgaaaggcttgtgcaaatcacaatgaacagcaagatgtttgttccactggcaatgaggagtcctcaaactctccaaagaaacggtgttagtaggtatgtggctgctttggttgatgaacttgatgttgtcggaagagaaatcaaggaaactactgatgatatggttcaaatgatcattggatgtggccatcagagcaccatatcagtttacgggatcctagggatgggaggaattggcaagacaactttagctcagaagatatacaatgatcgaaggataagggagaggtttcaccatgtccttatatggctgtcaatttctgagagcatctcagagactgacttgctgaaggaggccattgaaaaggcaggaggacagtcttatcagggcaagagtaaggatcaacttctacaagctctactaaattgtatcactggacaaagtatcttccttgtgttggataatatgacaagttcacatatctggattgatcttcttcgatcattccgaaccgaagacgaaataaatgtattcggtgatattggatcacagattgtcaagaaatgtgatgggcttcctcttgccatcaaggccgttgcaggctttgtgaagaaagagggcagcagaccgatacaggaggtagctgaagattactaccacgagctaatcatgagaaatctactgcaggcaagaccagagtacatagacaagggaatttctaccatgcatgatctactaaggttgcttggccaatacttgacaagagacgaagccgtgttcatggatgaggacgaaacccCtccaaatgttcggcgtttagcggttggcaacgccgttgaggaaatacctggtatacaagaccagaaaaacctacggtgcctcctagtgtatcaccacgacgcatgcagatcagtcaagagggacatttacaggaagctggagcatcttcgcatcttaattctagttggagcaggcctccagagcataccagagtcagttgggcacctggtgctgttgaggctgctggatgtcagctgtaatgaagaaatcaagcaacttccgggatccatcggaaaccttacctgccttgaatacctctcagtgtctggttgcgaaaaattggcatcgctgccggcgagtctgatgacgctgtccacgataagcttcctcaatataggtggcacagcactgaccccaagttcccaaagggatcgtctctccaagatacggcgcctcttgctgatcaagctggagaaagcctcaccgccagcttcacccgtgttgtgcaacaagcgtcacctcaaagagctcggccttacctgtacaatgggtgaagaagctgattgtcgaacaagctacgaggacagtgaagtgaagaacatcgaggagatctacaacaagctctgtccatcacgaaacttgcagtacatctttatagatgggttccctggtgacgcgtttccaaaatggttatcttcagagccgcaggacacactgccgaacctggctcatttgcacttcaaccactga
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| Protein seq | MNRIGIRERETRGGSLIGIVVVGAAAAAHTAHQPSSRGRADSPRMMRASLLAPLELSADLTPPLPSARHFASRVALPPLPEHSMLQVNASSLKVLQHLQPSPFSEKLVGILWEEFVKTLFVRRDIRRLRESLKYFDSVNEDADALALENRVTGTWWSDVKDVMYDVDDIVDFLRAHSYKQRCCDRVLFSRLAQLPLDYRIARRIKYVNERLVQITMNSKMFVPLAMRSPQTLQRNGVSRYVAALVDELDVVGREIKETTDDMVQMIIGCGHQSTISVYGILGMGGIGKTTLAQKIYNDRRIRERFHHVLIWLSISESISETDLLKEAIEKAGGQSYQGKSKDQLLQALLNCITGQSIFLVLDNMTSSHIWIDLLRSFRTEDEINVFGDIGSQIVKKCDGLPLAIKAVAGFVKKEGSRPIQEVAEDYYHELIMRNLLQARPEYIDKGISTMHDLLRLLGQYLTRDEAVFMDEDETPPNVRRLAVGNAVEEIPGIQDQKNLRCLLVYHHDACRSVKRDIYRKLEHLRILILVGAGLQSIPESVGHLVLLRLLDVSCNEEIKQLPGSIGNLTCLEYLSVSGCEKLASLPASLMTLSTISFLNIGGTALTPSSQRDRLSKIRRLLLIKLEKASPPASPVLCNKRHLKELGLTCTMGEEADCRTSYEDSEVKNIEEIYNKLCPSRNLQYIFIDGFPGDAFPKWLSSEPQDTLPNLAHLHFNH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.014420 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0332600 | RBH | 0.117646 | 0.241830 | 0.354971 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24380 | RBH | 0.079800 | 0.120586 | 0.069424 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0332600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011800 | RBH | 0.087345 | 0.000000 | 1.102696 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011920 | RBH | 0.000000 | 0.000000 | 0.167740 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012000 | RBH | 0.561548 | 0.0 | 2.659721 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011840 | RBH | 0.022875 | 0.075284 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011730 | RBH | 0.672342 | 9.862545 | 3.799636 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0229300 | RBH | 0.255272 | 2.2030935 | 0.308674 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011820 | RBH | 0.0 | 0.240183 | 0.203341 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0242700 | RBH | 0.281152 | 0.863974 | 4.231809 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0003960 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011370 | RBH | 0.000000 | 3.712087 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012140 | RBH | 0.0 | 0.331878 | 0.443074 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011400 | RBH | 0.060547 | 3.266646 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011600 | RBH | 0.098606 | 0.557536 | 0.289499 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011550 | RBH | 0.0 | 0.000000 | 2.209862 |
