Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0011210 | OGI:08041820 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:14027068-14028861 | ||||||||
| Gene Symbol | OsFbox438, Os_F0427 | ||||||||||
| DNA seq | ctaataacctctatcactagttgggcgatgctgtcggcgtggtagaatcggaaaatgaagcttataacccgtcccgtcccaaatccagggcggccccttccctagaacaggaaaatcgcagttatacttataccaggcacgatcccaccttgtgtcttcggccggcggtggaagtacggcagcagaggcgatcacgacctctcctgcacaagcacctgcagaatgagttctccatgtagcgatcttgctgttgatgtggtcagtgccatcctggtttcctccctcgatgtcaaactcttcaagaacagcagccttttctgccaagaacttcacgagctggacttgggagcaggtgagcttgcccttctgaaattggatgactacttttcttagagaattctgccagctactgcagaaattttgtgtgctcccggtcgcaggcgtatctgattctgaaaccttacagtaatcagactcctgcaatccgcacgccgaggatttcagataggccatcaggtctgcgccgagatgatcatctgcactctcattgagatattccaaccagctgaatcttatccggagctcacggatctccgggcatctacatagcatgtctccaacggccgttgccgccgccgacaagccgccgtccatggcaaatccacacagttcctctattacaaggtgcttgaagttcgggaagagagggaagtacccaaacttgatgtctccaacaattgagtacaccgtcagcttcaaaatgctgatgtggcacatGgtggtaagcagaggacctaatgtcgccgtgccggagatcgaccccaggtcgacttgtgccaagcacggcgcagctgatttcagcgatacggaaaaatataaagatgggacctgcgcgcagcGgaagcagatcaacgacggcgcgtcaagctcgaaggtgcgaccatcgatgtggcagttaaccatggtgaaggaggtgaccgccggacagtggagatggatgtgttcgtcgaagatgaagccgctgtagatgaagccgctaagcggtggtcgatcggagaaggtgactgactcgagacgcagctcggcgagcctcggcgcggcgaggatcaccttctggaggtcgcacagccgcacggtgcagcgccgcagccgcagcgtcgtgaggcacgggtaggcaatccagtcccacaaccattcggtcgtcgttaccttgaggcagcatcccgcgatgtccagaacccggaaatcctcgcagggcagcatgcccagatagagatcgtactcgacgccgggatcggcggcgtacttgtaccgtggcggcgacggcaacgatccgctggcgacctggcactcgaggcggagctcctccacgtggcggagcagcccgacacaggtgcctctgaactggtccgggttcaggtaccgcgagaaatcccgacggacgcagccgaagacgtagccgtcgtcgtggtctctgtaggctgtcaccgtgacggtgagcttcttgaggccgtggcggcggcggcggagcgctgcccgggcgtctccctcgtcttcccaggtcgaggggccggcctcgccccAccccctgtggaaggtcctatcgaggaattcgtcggaagttaagtcgatgttgacggtgccagtctccagccatagcggctgcaggcgccaccggcgagagaggagtgtgctgctggcggcctgcttgatgggggcgaaggagaggatacgtatgagcagatcgtcggggagctcggataggcggtctctgctcgccgtgcctttggccat
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| CDS seq | atggccaaaggcacggcgagcagagaccgcctatccgagctccccgacgatctgctcatacgtatcctctccttcgcccccatcaagcaggccgccagcagcacactcctctctcgccggtggcgcctgcagccgctatggctggagactggcaccgtcaacatcgacttaacttccgacgaattcctcgataggaccttccacagggggTggggcgaggccggcccctcgacctgggaagacgagggagacgcccgggcagcgctccgccgccgccgccacggcctcaagaagctcaccgtcacggtgacagcctacagagaccacgacgacggctacgtcttcggctgcgtccgtcgggatttctcgcggtacctgaacccggaccagttcagaggcacctgtgtcgggctgctccgccacgtggaggagctccgcctcgagtgccaggtcgccagcggatcgttgccgtcgccgccacggtacaagtacgccgccgatcccggcgtcgagtacgatctctatctgggcatgctgccctgcgaggatttccgggttctggacatcgcgggatgctgcctcaaggtaacgacgaccgaatggttgtgggactggattgcctacccgtgcctcacgacgctgcggctgcggcgctgcaccgtgcggctgtgcgacctccagaaggtgatcctcgccgcgccgaggctcgccgagctgcgtctcgagtcagtcaccttctccgatcgaccaccgcttagcggcttcatctacagcggcttcatcttcgacgaacacatccatctccactgtccggcggtcacctccttcaccatggttaactgccacatcgatggtcgcaccttcgagcttgacgcgccgtcgttgatctgcttcCgctgcgcgcaggtcccatctttatatttttccgtatcgctgaaatcagctgcgccgtgcttggcacaagtcgacctggggtcgatctccggcacggcgacattaggtcctctgcttaccacCatgtgccacatcagcattttgaagctgacggtgtactcaattgttggagacatcaagtttgggtacttccctctcttcccgaacttcaagcaccttgtaatagaggaactgtgtggatttgccatggacggcggcttgtcggcggcggcaacggccgttggagacatgctatgtagatgcccggagatccgtgagctccggataagattcagctggttggaatatctcaatgagagtgcagatgatcatctcggcgcagacctgatggcctatctgaaatcctcggcgtgcggattgcaggagtctgattactgtaaggtttcagaatcagatacgcctgcgaccgggagcacacaaaatttctgcagtagctggcagaattctctaagaaaagtagtcatccaatttcagaagggcaagctcacctgctcccaagtccagctcgtgaagttcttggcagaaaaggctgctgttcttgaagagtttgacatcgagggaggaaaccaggatggcactgaccacatcaacagcaagatcgctacatggagaactcattctgcaggtgcttgtgcaggagaggtcgtgatcgcctctgctgccgtacttccaccgccggccgaagacacaaggtgggatcgtgcctggtataagtataactgcgattttcctgttctagggaaggggccgccctggatttgggacgggacgggttataagcttcattttccgattctaccacgccgacagcatcgcccaactagtgatagaggttattag
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| Protein seq | MAKGTASRDRLSELPDDLLIRILSFAPIKQAASSTLLSRRWRLQPLWLETGTVNIDLTSDEFLDRTFHRGWGEAGPSTWEDEGDARAALRRRRHGLKKLTVTVTAYRDHDDGYVFGCVRRDFSRYLNPDQFRGTCVGLLRHVEELRLECQVASGSLPSPPRYKYAADPGVEYDLYLGMLPCEDFRVLDIAGCCLKVTTTEWLWDWIAYPCLTTLRLRRCTVRLCDLQKVILAAPRLAELRLESVTFSDRPPLSGFIYSGFIFDEHIHLHCPAVTSFTMVNCHIDGRTFELDAPSLICFRCAQVPSLYFSVSLKSAAPCLAQVDLGSISGTATLGPLLTTMCHISILKLTVYSIVGDIKFGYFPLFPNFKHLVIEELCGFAMDGGLSAAATAVGDMLCRCPEIRELRIRFSWLEYLNESADDHLGADLMAYLKSSACGLQESDYCKVSESDTPATGSTQNFCSSWQNSLRKVVIQFQKGKLTCSQVQLVKFLAEKAAVLEEFDIEGGNQDGTDHINSKIATWRTHSAGACAGEVVIASAAVLPPPAEDTRWDRAWYKYNCDFPVLGKGPPWIWDGTGYKLHFPILPRRQHRPTSDRGY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0011210 | OsLima_08g0011210.01 | Chr08 | 14027068 | 14028861 | - | NAM | ||
| CDS seq | atggccaaaggcacggcgagcagagaccgcctatccgagctccccgacgatctgctcatacgtatcctctccttcgcccccatcaagcaggccgccagcagcacactcctctctcgccggtggcgcctgcagccgctatggctggagactggcaccgtcaacatcgacttaacttccgacgaattcctcgataggaccttccacagggggTggggcgaggccggcccctcgacctgggaagacgagggagacgcccgggcagcgctccgccgccgccgccacggcctcaagaagctcaccgtcacggtgacagcctacagagaccacgacgacggctacgtcttcggctgcgtccgtcgggatttctcgcggtacctgaacccggaccagttcagaggcacctgtgtcgggctgctccgccacgtggaggagctccgcctcgagtgccaggtcgccagcggatcgttgccgtcgccgccacggtacaagtacgccgccgatcccggcgtcgagtacgatctctatctgggcatgctgccctgcgaggatttccgggttctggacatcgcgggatgctgcctcaaggtaacgacgaccgaatggttgtgggactggattgcctacccgtgcctcacgacgctgcggctgcggcgctgcaccgtgcggctgtgcgacctccagaaggtgatcctcgccgcgccgaggctcgccgagctgcgtctcgagtcagtcaccttctccgatcgaccaccgcttagcggcttcatctacagcggcttcatcttcgacgaacacatccatctccactgtccggcggtcacctccttcaccatggttaactgccacatcgatggtcgcaccttcgagcttgacgcgccgtcgttgatctgcttcCgctgcgcgcaggtcccatctttatatttttccgtatcgctgaaatcagctgcgccgtgcttggcacaagtcgacctggggtcgatctccggcacggcgacattaggtcctctgcttaccacCatgtgccacatcagcattttgaagctgacggtgtactcaattgttggagacatcaagtttgggtacttccctctcttcccgaacttcaagcaccttgtaatagaggaactgtgtggatttgccatggacggcggcttgtcggcggcggcaacggccgttggagacatgctatgtagatgcccggagatccgtgagctccggataagattcagctggttggaatatctcaatgagagtgcagatgatcatctcggcgcagacctgatggcctatctgaaatcctcggcgtgcggattgcaggagtctgattactgtaaggtttcagaatcagatacgcctgcgaccgggagcacacaaaatttctgcagtagctggcagaattctctaagaaaagtagtcatccaatttcagaagggcaagctcacctgctcccaagtccagctcgtgaagttcttggcagaaaaggctgctgttcttgaagagtttgacatcgagggaggaaaccaggatggcactgaccacatcaacagcaagatcgctacatggagaactcattctgcaggtgcttgtgcaggagaggtcgtgatcgcctctgctgccgtacttccaccgccggccgaagacacaaggtgggatcgtgcctggtataagtataactgcgattttcctgttctagggaaggggccgccctggatttgggacgggacgggttataagcttcattttccgattctaccacgccgacagcatcgcccaactagtgatagaggttattag
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| Protein seq | MAKGTASRDRLSELPDDLLIRILSFAPIKQAASSTLLSRRWRLQPLWLETGTVNIDLTSDEFLDRTFHRGWGEAGPSTWEDEGDARAALRRRRHGLKKLTVTVTAYRDHDDGYVFGCVRRDFSRYLNPDQFRGTCVGLLRHVEELRLECQVASGSLPSPPRYKYAADPGVEYDLYLGMLPCEDFRVLDIAGCCLKVTTTEWLWDWIAYPCLTTLRLRRCTVRLCDLQKVILAAPRLAELRLESVTFSDRPPLSGFIYSGFIFDEHIHLHCPAVTSFTMVNCHIDGRTFELDAPSLICFRCAQVPSLYFSVSLKSAAPCLAQVDLGSISGTATLGPLLTTMCHISILKLTVYSIVGDIKFGYFPLFPNFKHLVIEELCGFAMDGGLSAAATAVGDMLCRCPEIRELRIRFSWLEYLNESADDHLGADLMAYLKSSACGLQESDYCKVSESDTPATGSTQNFCSSWQNSLRKVVIQFQKGKLTCSQVQLVKFLAEKAAVLEEFDIEGGNQDGTDHINSKIATWRTHSAGACAGEVVIASAAVLPPPAEDTRWDRAWYKYNCDFPVLGKGPPWIWDGTGYKLHFPILPRRQHRPTSDRGY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0328600 | SBH | 0.120149 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24140 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0328600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011660 | RBH | 0.0 | 0.0 | 0.317543 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011790 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011850 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011700 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011620 | SBH | 0.0 | 0.0 | 1.137414 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0227400 | SBH | 0 | 0.023513 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011710 | SBH | 0.0 | 0.0 | 0.075796 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0241000 | SBH | 0.0100765 | 0.019601 | 0.007728 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011230 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011380 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011240 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012030 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011490 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011460 | RBH | 0.730696 | 0.779392 | 0.760577 |
