Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0011200 | OGI:08041900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:13909742-13911453 | ||||||||
| Gene Symbol | OsFbox437, Os_F0277 | ||||||||||
| DNA seq | tcacctacggaaggcagggtgccacccattgtacaagtagcgagtctcgtgcagatgctgtggcggcggccgacgagtaggacgttctgcaccaacacctgcaggatgagcttccttttccctagatgaagatgacctagctctccatgtggcaatcttggtgtttatctggtcagtgacatcctgactttctccgtcgatgtcaaactcttcaagaacagctgcattttctaccaagaacatcacaagttcgacttgggaacacgtaagctttcccttctgaaattgcacagttacttttctcagagagttcttccaactatcgttgagttcttgtcttcccctgtcagcagctgaaaccgcacagcgatcacagtaatcggactcgtcaaatctgcacgccatggattccagataacctgccaggtccgggctctcatggagatacttcgaccagctgaatcttatccagagctcacggatcaccgggcacctttgtagcagctccccgatagccgttgccgccgccgccgccgagccgttgcccatggcaaatccacacaattcctctatgacgaggtgcttgaggttagggaagcaaggcaatcgctcaaacttgatatcaccaacaatggagtacaccgtcagcttcaaaaccttgacatggcacatgtcgtggagaagagacctgaatatttccgtgccggagattgactccaggttagccttttccaagcacggcgcaggtggtttcagcgagatggactgctcgtaagatgagatctgggcgtagcggaagcagatcaacgccggcgcatcgagctcgaagctgcggcaaaacatgtggcagttgaccatggcgaaggcggtgaccgccgggcagtggagacggacgcgtttgtcggtggtcatgccgccgacggatccctgatccgggaaggtgactgactcgagacatacgtcggcgagcgccggcgcggcggtgatcagtctctggagctcgccgagcggcacggtgcaccgccggagccgcagcgtcgtcaggcacgggtaggcgatccgattccgaagacatagatgaatctcctctttcaggctgcatcccgtgaggtgaagaacccggaaatcctcgcatggcaggtggtgcagacggagattgtactcggggccgggcatggcgtacgtgtaccgcggcggcgaggacgacgacaacggcccggctccggcgggggcgtcgatctggcactcgaggcggagctcctcgacgttccggaacatccgcacgcacttgccgtggaaaacgaacgggttgaggtattccgagaaatccgaatagtagttgtcgtcgtccctgctggctgtcaccgtgacggagagcttcttgaggcggcgggggcggcggtcgcggcggagcgcttcccgggcgtctccctcgtctcgccacatcgccaggcagttgtgggcgtggttggagaattgctccgacgtcaagtcgacgttgaaggtgccagtctccagccacagcgggttgcgccaccggcgagagaggagggtggtgcttgcggcctccttgacggggacgaaggagaggatgcgtatgagcaggtcatcggggagctccgatagacggtcgctggccatggatgcggcggcagtgagatcttttttttcctcgagaaattcggcactgagatcgcgatctatgatctatc
More
|
||||||||||
| CDS seq | atggccagcgaccgtctatcggagctccccgatgacctgctcatacgcatcctctccttcgtccccgtcaaggaggccgcaagcaccaccctcctctctcgccggtggcgcaacccgctgtggctggagactggcaccttcaacgtcgacttgacgtcggagcaattctccaaccacgcccacaactgcctggcgatgtggcgagacgagggagacgcccgggaagcgctccgccgcgaccgccgcccccgccgcctcaagaagctctccgtcacggtgacagccagcagggacgacgacaactactattcggatttctcggaatacctcaacccgttcgttttccacggcaagtgcgtgcggatgttccggaacgtcgaggagctccgcctcgagtgccagatcgacgcccccgccggagccgggccgttgtcgtcgtcctcgccgccgcggtacacgtacgccatgcccggccccgagtacaatctccgtctgcaccacctgccatgcgaggatttccgggttcttcacctcacgggatgcagcctgaaagaggagattcatctatgtcttcggaatcggatcgcctacccgtgcctgacgacgctgcggctccggcggtgcaccgtgccgctcggcgagctccagagactgatcaccgccgcgccggcgctcgccgacgtatgtctcgagtcagtcaccttcccggatcagggatccgtcggcggcatgaccaccgacaaacgcgtccgtctccactgcccggcggtcaccgccttcgccatggtcaactgccacatgttttgccgcagcttcgagctcgatgcgccggcgttgatctgcttccgctacgcccagatctcatcttacgagcagtccatctcgctgaaaccacctgcgccgtgcttggaaaaggctaacctggagtcaatctccggcacggaaatattcaggtctcttctccacgacatgtgccatgtcaaggttttgaagctgacggtgtactccattgttggtgatatcaagtttgagcgattgccttgcttccctaacctcaagcacctcgtcatagaggaattgtgtggatttgccatgggcaacggctcggcggcggcggcggcaacggctatcggggagctgctacaaaggtgcccggtgatccgtgagctctggataagattcagctggtcgaagtatctccatgagagcccggacctggcaggttatctggaatccatggcgtgcagatttgacgagtccgattactgtgatcgctgtgcggtttcagctgctgacaggggaagacaagaactcaacgatagttggaagaactctctgagaaaagtaactgtgcaatttcagaagggaaagcttacgtgttcccaagtcgaacttgtgatgttcttggtagaaaatgcagctgttcttgaagagtttgacatcgacggagaaagtcaggatgtcactgaccagataaacaccaagattgccacatggagagctaggtcatcttcatctagggaaaaggaagctcatcctgcaggtgttggtgcagaacgtcctactcgtcggccgccgccacagcatctgcacgagactcgctacttgtacaatgggtggcaccctgccttccgtaggtga
More
|
||||||||||
| Protein seq | MASDRLSELPDDLLIRILSFVPVKEAASTTLLSRRWRNPLWLETGTFNVDLTSEQFSNHAHNCLAMWRDEGDAREALRRDRRPRRLKKLSVTVTASRDDDNYYSDFSEYLNPFVFHGKCVRMFRNVEELRLECQIDAPAGAGPLSSSSPPRYTYAMPGPEYNLRLHHLPCEDFRVLHLTGCSLKEEIHLCLRNRIAYPCLTTLRLRRCTVPLGELQRLITAAPALADVCLESVTFPDQGSVGGMTTDKRVRLHCPAVTAFAMVNCHMFCRSFELDAPALICFRYAQISSYEQSISLKPPAPCLEKANLESISGTEIFRSLLHDMCHVKVLKLTVYSIVGDIKFERLPCFPNLKHLVIEELCGFAMGNGSAAAAATAIGELLQRCPVIRELWIRFSWSKYLHESPDLAGYLESMACRFDESDYCDRCAVSAADRGRQELNDSWKNSLRKVTVQFQKGKLTCSQVELVMFLVENAAVLEEFDIDGESQDVTDQINTKIATWRARSSSSREKEAHPAGVGAERPTRRPPPQHLHETRYLYNGWHPAFRR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0011200 | OsLima_08g0011200.01 | Chr08 | 13909742 | 13911453 | - | NAM | ||
| CDS seq | atggccagcgaccgtctatcggagctccccgatgacctgctcatacgcatcctctccttcgtccccgtcaaggaggccgcaagcaccaccctcctctctcgccggtggcgcaacccgctgtggctggagactggcaccttcaacgtcgacttgacgtcggagcaattctccaaccacgcccacaactgcctggcgatgtggcgagacgagggagacgcccgggaagcgctccgccgcgaccgccgcccccgccgcctcaagaagctctccgtcacggtgacagccagcagggacgacgacaactactattcggatttctcggaatacctcaacccgttcgttttccacggcaagtgcgtgcggatgttccggaacgtcgaggagctccgcctcgagtgccagatcgacgcccccgccggagccgggccgttgtcgtcgtcctcgccgccgcggtacacgtacgccatgcccggccccgagtacaatctccgtctgcaccacctgccatgcgaggatttccgggttcttcacctcacgggatgcagcctgaaagaggagattcatctatgtcttcggaatcggatcgcctacccgtgcctgacgacgctgcggctccggcggtgcaccgtgccgctcggcgagctccagagactgatcaccgccgcgccggcgctcgccgacgtatgtctcgagtcagtcaccttcccggatcagggatccgtcggcggcatgaccaccgacaaacgcgtccgtctccactgcccggcggtcaccgccttcgccatggtcaactgccacatgttttgccgcagcttcgagctcgatgcgccggcgttgatctgcttccgctacgcccagatctcatcttacgagcagtccatctcgctgaaaccacctgcgccgtgcttggaaaaggctaacctggagtcaatctccggcacggaaatattcaggtctcttctccacgacatgtgccatgtcaaggttttgaagctgacggtgtactccattgttggtgatatcaagtttgagcgattgccttgcttccctaacctcaagcacctcgtcatagaggaattgtgtggatttgccatgggcaacggctcggcggcggcggcggcaacggctatcggggagctgctacaaaggtgcccggtgatccgtgagctctggataagattcagctggtcgaagtatctccatgagagcccggacctggcaggttatctggaatccatggcgtgcagatttgacgagtccgattactgtgatcgctgtgcggtttcagctgctgacaggggaagacaagaactcaacgatagttggaagaactctctgagaaaagtaactgtgcaatttcagaagggaaagcttacgtgttcccaagtcgaacttgtgatgttcttggtagaaaatgcagctgttcttgaagagtttgacatcgacggagaaagtcaggatgtcactgaccagataaacaccaagattgccacatggagagctaggtcatcttcatctagggaaaaggaagctcatcctgcaggtgttggtgcagaacgtcctactcgtcggccgccgccacagcatctgcacgagactcgctacttgtacaatgggtggcaccctgccttccgtaggtga
More
|
|||||||
| Protein seq | MASDRLSELPDDLLIRILSFVPVKEAASTTLLSRRWRNPLWLETGTFNVDLTSEQFSNHAHNCLAMWRDEGDAREALRRDRRPRRLKKLSVTVTASRDDDNYYSDFSEYLNPFVFHGKCVRMFRNVEELRLECQIDAPAGAGPLSSSSPPRYTYAMPGPEYNLRLHHLPCEDFRVLHLTGCSLKEEIHLCLRNRIAYPCLTTLRLRRCTVPLGELQRLITAAPALADVCLESVTFPDQGSVGGMTTDKRVRLHCPAVTAFAMVNCHMFCRSFELDAPALICFRYAQISSYEQSISLKPPAPCLEKANLESISGTEIFRSLLHDMCHVKVLKLTVYSIVGDIKFERLPCFPNLKHLVIEELCGFAMGNGSAAAAATAIGELLQRCPVIRELWIRFSWSKYLHESPDLAGYLESMACRFDESDYCDRCAVSAADRGRQELNDSWKNSLRKVTVQFQKGKLTCSQVELVMFLVENAAVLEEFDIDGESQDVTDQINTKIATWRARSSSSREKEAHPAGVGAERPTRRPPPQHLHETRYLYNGWHPAFRR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0328600 | RBH | 0.120149 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g23960 | RBH | 0.078921 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0328600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011640 | RBH | 0.380141 | 0.0 | 0.181982 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011770 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011840 | RBH | 0.241690 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011690 | RBH | 0.020463 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011590 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0225500 | RBH | 0.0962245 | 0 | 0.6390315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011680 | RBH | 0.056516 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0241000 | SBH | 0.0100765 | 0.019601 | 0.007728 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011230 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012000 | RBH | 0.107667 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011460 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011420 | RBH | 0.0 | 0.0 | 0.233884 |
