Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0011030 | OGI:08041470 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:13796750-13800808 | ||||||||
| Gene Symbol | GMPS1, OsGMPS1 | ||||||||||
| DNA seq | gggtaactccccaccttaaaccccagacaccctcaaaaaccctaatcccctccctcccgccgccgccgccgccgccgccatgggctccgcctccgcctcctcgctcccggcctccgccggcttcggcgagaacctggtcctcatcctcgacttcggctcacagtacacccacctcatcacccgccgcgtccgccagctgggggtcctctccctctgcgtctccggcacggcgccgctcgcctcgctcgcgggcctccgcccccgcgccgtcgtcctctccggggggccccactccgtacacgcctcgggggcgcccacgttccccgaggggttcctcgagttcgccgccggcgcgggcgcccacgtcctcggcgtctgctacgggatgcagctcctcgtgcagtccctcggcggcgccgtcgaggccggcgagaagcaggagtacgggaagatggaggtaaccgcccgctcctcggcgctgtacggggagggggaggtcgggaagcgccagacggtgtggatgagccacggggatgaggtggtgaggctgCcggaggggttcgaggtggtggcgcgcagcgtgcagggtgccgtcgctgccgtcgagaaccgtgagaagcgcttctatgggcttcagtatcaccctgaggtagcgaccgttacgattcttacacacatttttcaattggtgttatctaaatcaatcaacaaattcaattgcatttattagtcgttcttggaatatcatctctttgttgaaatgtgcattttgtatttggattgatgttatctaaattaaccagcaaattcaattgcatttatcactctttctcggaaaattatctttgttgaaatgtgcattttgtatttcggtcgatgttgtctagattaaccaacaaattcaattgcaattattagttctctttgttgaaatgtgcattttgtggagcatataagatgtaaattttgtgggaaactgattggttattgacgattgattattatttagttttgaaggtcaatttttgttttgaccttttggatagtGggtctTCttttcctgaaatagctgggtatcctttggggaaggaaagtagtcagttatatctaaacttccacaatatgaaaaggtgaaatagctgggtatcttttggggccataatatgaaaaagtgaaatagctgggtatcctttggtgtaaggaaggttgttagttccacaatatgaaaaactgcaactttagaacgactgtgattgcgctacaactttaaattttgctttgtttcgtaTttcctgaattaacctggatgctttctgcttatctagatcttgtgctaagttttataatgcaactgctgtatatggtgctgatgttttctgcacagagtaaaataaatttgtgtttggggcttagcatactgttgattgtgtgttcacttgattgggatttattattatgcactcaatttggttcttttgtagttggcatgcatgcatggcaaacatgttgttaaactgtttacaccaaagcatggttatgacgaactattaatttaaactgtttacaccgaagcatggttatgacgaactattcattcttttcattatacaaggtgacacattcaccccaaggaatggaaacactgcggcgcttcctttttgatgtttgtgggataaaagctgattggaagatgcaagatgtgctggatgaagaaattaggacaatccaaagcatggttgggcctgatgaacatgtgatttgtgctttatctggtggagttgattcaactgttgctgccactctggttcacaaggcaataggggatagacttcactgtgtttttgttgacaatggcctattaaggtagtccttgtttcattatgttatttagtgataacattttcagaatcagtatgcaatggaactgacataagaccccttgtacagatacaatgagagggaacgggtaatgttaacctttgaaagtgacttgcaccttcccgtcacatgtgttgatgcatctgagcaatttcttagcaagctaaagggtgtcaaagatccagaaatgaagagaaagataattggaagggaattcatagcagtttttgatgattttgctcacaaattagaacagaagataggaaaaagacctggatatttagttcaagggacactgtaccctgatgtgattgaatcatgcccacctcctggaagcggaaggacacattctcataccatcaaaagccatcacaatgttggtggtcttccaaaagatatgaagttaaagctaattgaaccactcaagctcttatttaaggATgaggtctcattgaaatttatttacataatatctctccatttttatcctttgcatgatcttgtgcaataaaatttacataaattacattttgatggaaagattctgataagtaaatttcaaacatatttttctattccaaaaggtacggaagttggggagtattttaaatgtcccagagtcattcttgaagcgacacccatttcctgggcctggtcttgctgtacgtgtcctaggtgatgttacagaaggcaatgctttggaggttcttcgtcaggtttgaagcctttcaaactgttgaaaaatcactacatcagctttggtatatgatgttaattcgcattgtcatttatttgtcaggttgatgaaatatttgttcaagccattaaagatgcaggtctctatgatataatttggcaagcatttgctgtgtttttgcctgtacaaacagtgggagttcagggtgaccagagaactcactccaatgcagttgCttTGAgggcaattactagtgaggatggcatgactgcagattggtatgtaacactgacgttctggctcttacacccacttgcaatttgttgattgtcgcagccttcgttgtgccattttgcagcagtttcttgtggttcgacagatatgttatatacattgcacagttcacaataggatacttgtgaattgaatcatgcccaccttccagtagtttgaatgatgagatgatagttcagcattcacctttatacccttgcctattgccttcttgatcatttatgttaataatttgctgcttcatttttcatcggtttatcagccgtagagcaaacaacgagagtcttggtttatcagccgtatagcaaacaacaagtcttggttatctttgaaatatttttaaattatttgacaaatacaaatttaggGTgttcattaattttatatttgtctctggtgcttgtcctgtatgcctatttcttggtgtgcaattattgcttaggtctgctaatagttcgaacctacagaaatacatttgttttgTGTtGtgtgtgtgaatcttttgAaatcttgcatgttttcttatgtgataactttgccctgtgaaCTcttttctcaggtattattttgagcgtgagttcctggtagatgtggtcaacaagatctgcaacaatgtgcgaggTgttaaccgtgttgtccaggacatcacgcaaaagccacctgcgacagtggaatgggaataggaacttcgtgctctgaattctgatgccgtggagtggcctacttttatgctgcaatggagtgggaatatcaacatattcccatattatacatatagctgtttattactagattgtttgtttacatcctttgacaaatccctatttgtcaacctgtgatagaatttgaactgagaaaagctttgaactgcacttatcaactgtgctttctattcttgaatagatatcttcacctttgaagaccttttatcttttggagtaaatctttgttgctacaaaaTTttcattatcccttgtgccccccatcttttagacaaagagatgtgccatctacaggatttggattttttttcaattgttcttttaggacagaatcttttagacaaaagggatgtgccatctatggatatggatttttttttttCttattgattctttaggatagattattggcgttgaaaactgacgttggtgtcattgggccttctggttttagcggacgttggctaa
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| CDS seq | atgggctccgcctccgcctcctcgctcccggcctccgccggcttcggcgagaacctggtcctcatcctcgacttcggctcacagtacacccacctcatcacccgccgcgtccgccagctgggggtcctctccctctgcgtctccggcacggcgccgctcgcctcgctcgcgggcctccgcccccgcgccgtcgtcctctccggggggccccactccgtacacgcctcgggggcgcccacgttccccgaggggttcctcgagttcgccgccggcgcgggcgcccacgtcctcggcgtctgctacgggatgcagctcctcgtgcagtccctcggcggcgccgtcgaggccggcgagaagcaggagtacgggaagatggaggtaaccgcccgctcctcggcgctgtacggggagggggaggtcgggaagcgccagacggtgtggatgagccacggggatgaggtggtgaggctgCcggaggggttcgaggtggtggcgcgcagcgtgcagggtgccgtcgctgccgtcgagaaccgtgagaagcgcttctatgggcttcagtatcaccctgaggtgacacattcaccccaaggaatggaaacactgcggcgcttcctttttgatgtttgtgggataaaagctgattggaagatgcaagatgtgctggatgaagaaattaggacaatccaaagcatggttgggcctgatgaacatgtgatttgtgctttatctggtggagttgattcaactgttgctgccactctggttcacaaggcaataggggatagacttcactgtgtttttgttgacaatggcctattaagatacaatgagagggaacgggtaatgttaacctttgaaagtgacttgcaccttcccgtcacatgtgttgatgcatctgagcaatttcttagcaagctaaagggtgtcaaagatccagaaatgaagagaaagataattggaagggaattcatagcagtttttgatgattttgctcacaaattagaacagaagataggaaaaagacctggatatttagttcaagggacactgtaccctgatgtgattgaatcatgcccacctcctggaagcggaaggacacattctcataccatcaaaagccatcacaatgttggtggtcttccaaaagatatgaagttaaagctaattgaaccactcaagctcttatttaaggATgaggtacggaagttggggagtattttaaatgtcccagagtcattcttgaagcgacacccatttcctgggcctggtcttgctgtacgtgtcctaggtgatgttacagaaggcaatgctttggaggttcttcgtcaggttgatgaaatatttgttcaagccattaaagatgcaggtctctatgatataatttggcaagcatttgctgtgtttttgcctgtacaaacagtgggagttcagggtgaccagagaactcactccaatgcagttgCttTGAgggcaattactagtgaggatggcatgactgcagattggtattattttgagcgtgagttcctggtagatgtggtcaacaagatctgcaacaatgtgcgaggTgttaaccgtgttgtccaggacatcacgcaaaagccacctgcgacagtggaatgggaatag
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| Protein seq | MGSASASSLPASAGFGENLVLILDFGSQYTHLITRRVRQLGVLSLCVSGTAPLASLAGLRPRAVVLSGGPHSVHASGAPTFPEGFLEFAAGAGAHVLGVCYGMQLLVQSLGGAVEAGEKQEYGKMEVTARSSALYGEGEVGKRQTVWMSHGDEVVRLPEGFEVVARSVQGAVAAVENREKRFYGLQYHPEVTHSPQGMETLRRFLFDVCGIKADWKMQDVLDEEIRTIQSMVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYNERERVMLTFESDLHLPVTCVDASEQFLSKLKGVKDPEMKRKIIGREFIAVFDDFAHKLEQKIGKRPGYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGSILNVPESFLKRHPFPGPGLAVRVLGDVTEGNALEVLRQVDEIFVQAIKDAGLYDIIWQAFAVFLPVQTVGVQGDQRTHSNAVALRAITSEDGMTADWYYFEREFLVDVVNKICNNVRGVNRVVQDITQKPPATVEWE |
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| Function | GMP synthase [glutamine-hydrolyzing] [UniProtKB/Swiss-Prot:O66601] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0011030 | OsLima_08g0011030.01 | Chr08 | 13796750 | 13800808 | + | NAM | ||
| CDS seq | atgggctccgcctccgcctcctcgctcccggcctccgccggcttcggcgagaacctggtcctcatcctcgacttcggctcacagtacacccacctcatcacccgccgcgtccgccagctgggggtcctctccctctgcgtctccggcacggcgccgctcgcctcgctcgcgggcctccgcccccgcgccgtcgtcctctccggggggccccactccgtacacgcctcgggggcgcccacgttccccgaggggttcctcgagttcgccgccggcgcgggcgcccacgtcctcggcgtctgctacgggatgcagctcctcgtgcagtccctcggcggcgccgtcgaggccggcgagaagcaggagtacgggaagatggaggtaaccgcccgctcctcggcgctgtacggggagggggaggtcgggaagcgccagacggtgtggatgagccacggggatgaggtggtgaggctgCcggaggggttcgaggtggtggcgcgcagcgtgcagggtgccgtcgctgccgtcgagaaccgtgagaagcgcttctatgggcttcagtatcaccctgaggtgacacattcaccccaaggaatggaaacactgcggcgcttcctttttgatgtttgtgggataaaagctgattggaagatgcaagatgtgctggatgaagaaattaggacaatccaaagcatggttgggcctgatgaacatgtgatttgtgctttatctggtggagttgattcaactgttgctgccactctggttcacaaggcaataggggatagacttcactgtgtttttgttgacaatggcctattaagatacaatgagagggaacgggtaatgttaacctttgaaagtgacttgcaccttcccgtcacatgtgttgatgcatctgagcaatttcttagcaagctaaagggtgtcaaagatccagaaatgaagagaaagataattggaagggaattcatagcagtttttgatgattttgctcacaaattagaacagaagataggaaaaagacctggatatttagttcaagggacactgtaccctgatgtgattgaatcatgcccacctcctggaagcggaaggacacattctcataccatcaaaagccatcacaatgttggtggtcttccaaaagatatgaagttaaagctaattgaaccactcaagctcttatttaaggATgaggtacggaagttggggagtattttaaatgtcccagagtcattcttgaagcgacacccatttcctgggcctggtcttgctgtacgtgtcctaggtgatgttacagaaggcaatgctttggaggttcttcgtcaggttgatgaaatatttgttcaagccattaaagatgcaggtctctatgatataatttggcaagcatttgctgtgtttttgcctgtacaaacagtgggagttcagggtgaccagagaactcactccaatgcagttgCttTGAgggcaattactagtgaggatggcatgactgcagattggtattattttgagcgtgagttcctggtagatgtggtcaacaagatctgcaacaatgtgcgaggTgttaaccgtgttgtccaggacatcacgcaaaagccacctgcgacagtggaatgggaatag
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| Protein seq | MGSASASSLPASAGFGENLVLILDFGSQYTHLITRRVRQLGVLSLCVSGTAPLASLAGLRPRAVVLSGGPHSVHASGAPTFPEGFLEFAAGAGAHVLGVCYGMQLLVQSLGGAVEAGEKQEYGKMEVTARSSALYGEGEVGKRQTVWMSHGDEVVRLPEGFEVVARSVQGAVAAVENREKRFYGLQYHPEVTHSPQGMETLRRFLFDVCGIKADWKMQDVLDEEIRTIQSMVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYNERERVMLTFESDLHLPVTCVDASEQFLSKLKGVKDPEMKRKIIGREFIAVFDDFAHKLEQKIGKRPGYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGSILNVPESFLKRHPFPGPGLAVRVLGDVTEGNALEVLRQVDEIFVQAIKDAGLYDIIWQAFAVFLPVQTVGVQGDQRTHSNAVALRAITSEDGMTADWYYFEREFLVDVVNKICNNVRGVNRVVQDITQKPPATVEWE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.820975 | 0.505341 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0326600 | RBH | 8.306667 | 8.651312 | 15.476094 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g23730 | RBH | 4.992129 | 5.171048 | 3.540407 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0326600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011490 | RBH | 5.164391 | 18.238688 | 11.601171 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011600 | RBH | 0.115908 | 7.100977 | 9.535778 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011680 | RBH | 7.777099 | 18.950846 | 34.914780 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011530 | RBH | 1.135523 | 1.485950 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011430 | RBH | 13.983049 | 53.476494 | 28.096872 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0223900 | SBH | 13.3466205 | 23.810964 | 9.2507845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011520 | RBH | 1.063428 | 1.755267 | 2.232049 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011190 | RBH | 1.535468 | 27.918762 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011050 | RBH | 6.481653 | 45.905689 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011840 | RBH | 2.148571 | 2.279049 | 2.912031 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011090 | RBH | 0.477258 | 12.447327 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011300 | RBH | 2.374931 | 16.043915 | 5.862205 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011250 | RBH | 4.350934 | 24.843119 | 24.860477 |
