Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0010920 | OGI:06051830 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:13694944-13697958 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaccatccttgtgccactcccacccccaccagcaaaagcctgatgccccacttgcccccaagtcgcgaaagactgatgaatctctcgcctccaaggtattcatccacgtaccgtttggcgacactctagttgcatacatgaaaaggaaatggagatgatggagttattgcaaataaattataagtaaaacaatctggcactgcatcataaatcttaagcaaccgcagcaagtgtatcgcatgtaaattcagtggatagtttaaataatcttaagcaaccgcagaagtaacaacatcgagaataatgtttatcggtagtttaaatagtgcgtaattgagcagtatggacatcaatagtgtaaacaccagtttatattagtgcgtatttgaaagtatgcacatttgagaaaagaaatatgacactcactagagtggataacactccagacacgttgctccttttaatgacagctacaaatattgggatttcagaatgaatatgttggatcttgaagttcaccaccttctcctgaactggatttagtttggtcctacgcccaatgatgggatcaggtataacacctactctgcaaccctgatcttcagagggcaaagaatatcctgtgtgcaaagaaaagaaaacatcaaccagttatagctgtgaaatatgacatgacaacaccagatgagatttataaggcaatgcatataagaactgagttgtaaccgatgactcggaggaggaactcatcatggtcttgttgcactcacttaagttatctctttgcacctgtgtccatctatatgttggtggtgactgcatttgcgtgggcatagcttgagtgcgagaaagggccatgttttcaattggcatctgcatgggataatgaggagcatgaaaatggttcacggtttcagtaggcaattgcatcggcatgggttgaggatgagcacgagaactgttcagtgtttcagtagctggtgactgcattggcatgtcctgagaatgagcacgagaactgttcagtgtttcagtagctggtgtctgcattggcatgggctgagaatgagcacgagaactgttaagcgtttcagtagcatttgtgcgcccttcttgcacattaggatcaagataatcatcctgagaatgagcacgagaactgttcagtgtttcagtagcatctgtgcgcccttcttgcacattaggatccagataatcatccacagcaacagaacatactttctcgcggccaacttgatcaaatattatgacatcaaactgagaatttcctttgaatctgaacatcatggagtcacccatacgtaaatcaaaggttttgacgaattgtgcccatcctgctgcaaagataaccttttcttgggacttgtcaactctaacagtgtaactgtttctgttatgtgtttccagttggatttcttcagggatgtcaccctttaaacgctgcacaaattctttcggaatggtctgcagaaacatatttttgaaggtgttaatctgaaattataatttatgaacaaagttcagaacatactagctgctccactatctgctctcctctctgcaatatgaagacaacagaaggcccaacccagaatgctacaatctaattcatggcttgacctcgatgctactagtgaactgcgtagttctgatgtgatatgggtgatgtacagcaatgaatcagaattagtctcccccaacctaagtcctcctctcatccctagcaaccatcgccgcccggctatccacccggtggtgtttaccccctaagaaccctaacccataacatatggaaccaattaattccatgaagaaatttccaacccatagagtcctatttttcaaccgaaatagagtagacatacaagtccataatatatctttacttatttacatatctgcagttatcatgattttttgcacaaaataaagtggacaaaaagtacaattttacccatccgatcttatacttttatggacaattataccctttcacgtttatactactgctaactaaggttgtagtataaaaaagatctgaacccttgaatacaactaggggcctgtttagattggtgtcattttaaactataccatcatttggtaaaattgacaaatatattactatatttagtttgttaccaaattatggtaacgcataggaaactttggcacaacatatttattccatcctaccaaaatttggcaattttatcaacttaccaaaaatttggcaatgttgattttgacaataatttgaacaagccctagacccacggtttagattaatttctactaccagtaaagagtaccgtaacgagactcttctttcattgctacagcgatgttaacataattttggtgctagtttaaatgtatgtcagtcatgcacataatacgatctttgccattgatatattcatatgagtacttttcatgtttatgttcaaaatggggcctttctttttagttccaccctgtgcgacaaaaatctcagggcaggccctgatttctgtatgtgactacagaacaaactgatgaaattgaaaagcccaatttcttgctcttttagatatgatgacatctggtgccaaccaacaaacctaatgtgctgttatgttattggcttaaatctggtcatcaatatttattctttttaagagggtacaatctagtcatcgattaatatggaaatttgcaaggaagatcaagattataagcttgaaataacctactactaccaaactgggtctgcaatccttttccAaaaaaaaaaaaaaaagggtctgcaagtaggaaagtaacacaaaagttacataaggcaagggacaagaaaagaaggcattgcattttcataaataatagagtatttggcttacaatctcatgttgaaaatcacccatcataagcagcaaaaagtgtttctggcaatcatccaaattcctgtagtcctgctcatcgcgccgtctacatctttcgcaccacgtgcccat
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| CDS seq | atgggcacgtggtgcgaaagatgtagacggcgcgatgagcaggactacaggaatttggatgattgccagaaacactttttgctgcttatgatgggtgattttcaacatgagattagaggagagcagatagtggagcagctaattaacaccttcaaaaatatgtttctgcagaccattccgaaagaatttgtgcagcgtttaaagggtgacatccctgaagaaatccaactggaaacacataacagaaacagttacactgttagagttgacaagtcccaagaaaaggttatctttgcagcaggatgggcacaattcgtcaaaacctttgatttacgtatgggtgactccatgatgttcagattcaaaggaaattctcagtttgatgtcataatatttgatcaagttggccgcgagaaagtatgttctgttgctgtggatgattatctggatcctaatgtgcaagaagggcgcacagatgctactgaaacactgaacagttctcgtgctcattctcaggatgattatcttgatcctaatgtgcaagaagggcgcacaaatgctactgaaacgcttaacagttctcgtgctcattctcagcccatgccaatgcagacaccagctactgaaacactgaacagttctcgtgctcattctcaggacatgccaatgcagtcaccagctactgaaacactgaacagttctcgtgctcatcctcaacccatgccgatgcaattgcctactgaaaccgtgaaccattttcatgctcctcattatcccatgcagatgccaattgaaaacatggccctttctcgcactcaagctatgcccacgcaaatgcagtcaccaccaacatatagatggacacaggtgcaaagagataacttaagatattctttgccctctgaagatcagggttgcagagtaggtgttatacctgatcccatcattgggcgtaggaccaaactaaatccagttcaggagaaggtggtgaacttcaagatccaacatattcattctgaaatcccaatatttgtagctgtcattaaaaggagcaacgtgtctggagtgttatccactctaagtgtcgccaaacggtacgtggatgaataccttggaggcgagagattcatcagtctttcgcgacttgggggcaagtggggcatcaggcttttgctggtgggggtgggagtggcacaaggatggtag
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| Protein seq | MGTWCERCRRRDEQDYRNLDDCQKHFLLLMMGDFQHEIRGEQIVEQLINTFKNMFLQTIPKEFVQRLKGDIPEEIQLETHNRNSYTVRVDKSQEKVIFAAGWAQFVKTFDLRMGDSMMFRFKGNSQFDVIIFDQVGREKVCSVAVDDYLDPNVQEGRTDATETLNSSRAHSQDDYLDPNVQEGRTNATETLNSSRAHSQPMPMQTPATETLNSSRAHSQDMPMQSPATETLNSSRAHPQPMPMQLPTETVNHFHAPHYPMQMPIENMALSRTQAMPTQMQSPPTYRWTQVQRDNLRYSLPSEDQGCRVGVIPDPIIGRRTKLNPVQEKVVNFKIQHIHSEIPIFVAVIKRSNVSGVLSTLSVAKRYVDEYLGGERFISLSRLGGKWGIRLLLVGVGVAQGW |
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| Function | Putative B3 domain-containing protein Os08g0325100 [UniProtKB/Swiss-Prot:Q6Z0D2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0010920 | OsLima_08g0010920.01 | Chr08 | 13694944 | 13697958 | - | NAM | ||
| CDS seq | atgggcacgtggtgcgaaagatgtagacggcgcgatgagcaggactacaggaatttggatgattgccagaaacactttttgctgcttatgatgggtgattttcaacatgagattagaggagagcagatagtggagcagctaattaacaccttcaaaaatatgtttctgcagaccattccgaaagaatttgtgcagcgtttaaagggtgacatccctgaagaaatccaactggaaacacataacagaaacagttacactgttagagttgacaagtcccaagaaaaggttatctttgcagcaggatgggcacaattcgtcaaaacctttgatttacgtatgggtgactccatgatgttcagattcaaaggaaattctcagtttgatgtcataatatttgatcaagttggccgcgagaaagtatgttctgttgctgtggatgattatctggatcctaatgtgcaagaagggcgcacagatgctactgaaacactgaacagttctcgtgctcattctcaggatgattatcttgatcctaatgtgcaagaagggcgcacaaatgctactgaaacgcttaacagttctcgtgctcattctcagcccatgccaatgcagacaccagctactgaaacactgaacagttctcgtgctcattctcaggacatgccaatgcagtcaccagctactgaaacactgaacagttctcgtgctcatcctcaacccatgccgatgcaattgcctactgaaaccgtgaaccattttcatgctcctcattatcccatgcagatgccaattgaaaacatggccctttctcgcactcaagctatgcccacgcaaatgcagtcaccaccaacatatagatggacacaggtgcaaagagataacttaagatattctttgccctctgaagatcagggttgcagagtaggtgttatacctgatcccatcattgggcgtaggaccaaactaaatccagttcaggagaaggtggtgaacttcaagatccaacatattcattctgaaatcccaatatttgtagctgtcattaaaaggagcaacgtgtctggagtgttatccactctaagtgtcgccaaacggtacgtggatgaataccttggaggcgagagattcatcagtctttcgcgacttgggggcaagtggggcatcaggcttttgctggtgggggtgggagtggcacaaggatggtag
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| Protein seq | MGTWCERCRRRDEQDYRNLDDCQKHFLLLMMGDFQHEIRGEQIVEQLINTFKNMFLQTIPKEFVQRLKGDIPEEIQLETHNRNSYTVRVDKSQEKVIFAAGWAQFVKTFDLRMGDSMMFRFKGNSQFDVIIFDQVGREKVCSVAVDDYLDPNVQEGRTDATETLNSSRAHSQDDYLDPNVQEGRTNATETLNSSRAHSQPMPMQTPATETLNSSRAHSQDMPMQSPATETLNSSRAHPQPMPMQLPTETVNHFHAPHYPMQMPIENMALSRTQAMPTQMQSPPTYRWTQVQRDNLRYSLPSEDQGCRVGVIPDPIIGRRTKLNPVQEKVVNFKIQHIHSEIPIFVAVIKRSNVSGVLSTLSVAKRYVDEYLGGERFISLSRLGGKWGIRLLLVGVGVAQGW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0325134 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g23570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0325134 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011370 | RBH | 0.0 | 0.0 | 0.539293 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011510 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011560 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011410 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011340 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0221100 | SBH | 0.0451685 | 0.046133 | 1.067614 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011430 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0234900 | RBH | 0 | 0 | 0.006922 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0010910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011220 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011160 | RBH | 0.0 | 0.0 | 0.0 |
